RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 NLRP7Q8WX94 980 aa9.1□□□□□ -0.95
VPS53-217ENST00000575100 CARD11Q9BXL7 1154 aa9.1□□□□□ -0.95
VPS53-217ENST00000575100 BIN2Q9UBW5 565 aaPredicted RBP9.1□□□□□ -0.95
VPS53-217ENST00000575100 A0A0U1RQG5 324 aaPredicted RBP9.1□□□□□ -0.95
VPS53-217ENST00000575100 TMEM132EQ6IEE7 984 aa9.1□□□□□ -0.95
VPS53-217ENST00000575100 TINF2Q9BSI4 451 aa9.1□□□□□ -0.95
VPS53-217ENST00000575100 PXDNQ92626 1479 aa9.1□□□□□ -0.95
VPS53-217ENST00000575100 ATAD2Q6PL18 1390 aa9.09□□□□□ -0.95
VPS53-217ENST00000575100 USP47Q96K76 1375 aa9.09□□□□□ -0.95
VPS53-217ENST00000575100 SCAMP3O14828 347 aaKnown RBP9.09□□□□□ -0.95
VPS53-217ENST00000575100 LILRB3O75022 631 aa9.09□□□□□ -0.95
VPS53-217ENST00000575100 FGD1P98174 961 aa9.09□□□□□ -0.95
VPS53-217ENST00000575100 NGLY1Q96IV0 654 aa9.09□□□□□ -0.95
VPS53-217ENST00000575100 STAC3Q96MF2 364 aa9.09□□□□□ -0.95
VPS53-217ENST00000575100 C14orf93Q9H972 538 aaKnown RBP9.09□□□□□ -0.95
VPS53-217ENST00000575100 ADGRB1O14514 1584 aa9.09□□□□□ -0.95
VPS53-217ENST00000575100 TECPR2O15040 1411 aa9.09□□□□□ -0.95
VPS53-217ENST00000575100 SOX11P35716 441 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 C9orf131Q5VYM1 1079 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 CHADLQ6NUI6 762 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 SMC5Q8IY18 1101 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 DHX38Q92620 1227 aaKnown RBP9.08□□□□□ -0.96
VPS53-217ENST00000575100 KIF1AQ12756 1690 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 FMN2Q9NZ56 1722 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 CCDC194A0A1B0GVG4 234 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 C11orf95C9JLR9 678 aaPredicted RBP9.08□□□□□ -0.96
VPS53-217ENST00000575100 ATP9BO43861 1147 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 EIF4G2P78344 907 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS53-217ENST00000575100 MRPL58Q14197 206 aaKnown RBP9.08□□□□□ -0.96
VPS53-217ENST00000575100 SPTY2D1Q68D10 685 aaPredicted RBP9.08□□□□□ -0.96
VPS53-217ENST00000575100 SPIRE2Q8WWL2 714 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 ARMC5Q96C12 935 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 ORAI2Q96SN7 254 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 TRIM34Q9BYJ4 488 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 BRINP2Q9C0B6 783 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 PIF1Q9H611 641 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 PRKAG2Q9UGJ0 569 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 NOVA2Q9UNW9 492 aaKnown RBP9.08□□□□□ -0.96
VPS53-217ENST00000575100 FAN1Q9Y2M0 1017 aa9.08□□□□□ -0.96
VPS53-217ENST00000575100 KIAA1210Q9ULL0 1709 aa9.07□□□□□ -0.96
VPS53-217ENST00000575100 ANAPC15P60006 121 aa9.07□□□□□ -0.96
VPS53-217ENST00000575100 LDLRAD1Q5T700 205 aa9.07□□□□□ -0.96
VPS53-217ENST00000575100 RSBN1LQ6PCB5 846 aaPredicted RBP9.07□□□□□ -0.96
VPS53-217ENST00000575100 TRPC5Q9UL62 973 aaPredicted RBP9.07□□□□□ -0.96
VPS53-217ENST00000575100 ST20-MTHFSA0A0A6YYL1 179 aa9.06□□□□□ -0.96
VPS53-217ENST00000575100 ADAMTS2O95450 1211 aa9.06□□□□□ -0.96
VPS53-217ENST00000575100 FXR2P51116 673 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS53-217ENST00000575100 APBB1IPQ7Z5R6 666 aaPredicted RBP9.06□□□□□ -0.96
VPS53-217ENST00000575100 USP21Q9UK80 565 aa9.06□□□□□ -0.96
VPS53-217ENST00000575100 RTL5Q5HYW3 569 aaPredicted RBP9.06□□□□□ -0.96
VPS53-217ENST00000575100 SLC43A3Q8NBI5 491 aa9.06□□□□□ -0.96
VPS53-217ENST00000575100 SGSM3Q96HU1 749 aa9.06□□□□□ -0.96
VPS53-217ENST00000575100 CDHR5Q9HBB8 845 aa9.06□□□□□ -0.96
VPS53-217ENST00000575100 NPHP3Q7Z494 1330 aa9.06□□□□□ -0.96
VPS53-217ENST00000575100 BCL9LQ86UU0 1499 aa9.06□□□□□ -0.96
VPS53-217ENST00000575100 RALBP1Q15311 655 aa9.05□□□□□ -0.96
VPS53-217ENST00000575100 HMX1Q9NP08 348 aaPredicted RBP9.05□□□□□ -0.96
VPS53-217ENST00000575100 NOP58Q9Y2X3 529 aaKnown RBP9.05□□□□□ -0.96
VPS53-217ENST00000575100 TCEAL1Q15170 157 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 CSPP1Q1MSJ5 1256 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 LRPPRCP42704 1394 aaKnown RBP9.04□□□□□ -0.96
VPS53-217ENST00000575100 BRWD3Q6RI45 1802 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 PLPP6Q8IY26 295 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 CLP1Q92989 425 aaKnown RBP9.04□□□□□ -0.96
VPS53-217ENST00000575100 CHPF2Q9P2E5 772 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 TRAK1Q9UPV9 953 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 ABCA3Q99758 1704 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 USP32Q8NFA0 1604 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 GLI3P10071 1580 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 SLIT2O94813 1529 aa9.04□□□□□ -0.96
VPS53-217ENST00000575100 RGPD8O14715 1765 aaPredicted RBP9.03□□□□□ -0.96
VPS53-217ENST00000575100 ABCC11Q96J66 1382 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 NWD2Q9ULI1 1742 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 WASHC2AQ641Q2 1341 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 LZTS3O60299 673 aaPredicted RBP9.03□□□□□ -0.96
VPS53-217ENST00000575100 ATP2B1P20020 1258 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 COL19A1Q14993 1142 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 METTL16Q86W50 562 aaKnown RBP9.03□□□□□ -0.96
VPS53-217ENST00000575100 TESK2Q96S53 571 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 PLCD4Q9BRC7 762 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 UBA5Q9GZZ9 404 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 IBSPP21815 317 aaPredicted RBP9.03□□□□□ -0.96
VPS53-217ENST00000575100 CCDC136Q96JN2 1154 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 ASB16Q96NS5 453 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 NLRP2Q9NX02 1062 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 STK26Q9P289 416 aa9.03□□□□□ -0.96
VPS53-217ENST00000575100 FAM161AQ3B820 660 aa9.02□□□□□ -0.97
VPS53-217ENST00000575100 TERF2IPQ9NYB0 399 aa9.02□□□□□ -0.97
VPS53-217ENST00000575100 LAS1LQ9Y4W2 734 aaKnown RBP9.02□□□□□ -0.97
VPS53-217ENST00000575100 PLCH1Q4KWH8 1693 aa9.02□□□□□ -0.97
VPS53-217ENST00000575100 YTHDC2Q9H6S0 1430 aaKnown RBP9.02□□□□□ -0.97
VPS53-217ENST00000575100 EIF3JO75822 258 aaKnown RBP9.01□□□□□ -0.97
VPS53-217ENST00000575100 OATP04181 439 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 GTF2F1P35269 517 aaKnown RBP eCLIP9.01□□□□□ -0.97
VPS53-217ENST00000575100 GJA5P36382 358 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 ESCO1Q5FWF5 840 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 NT5DC4Q86YG4 428 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 EVI5LQ96CN4 794 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 PRDM10Q9NQV6 1147 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 EVX2Q03828 476 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms