RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 PDE4AP27815 886 aa20.29■□□□□ 0.84
SMPD3-212ENST00000574662 MRPL50Q8N5N7 158 aaKnown RBP20.29■□□□□ 0.84
SMPD3-212ENST00000574662 UPF1Q92900 1129 aaKnown RBP eCLIP20.29■□□□□ 0.84
SMPD3-212ENST00000574662 SMARCC1Q92922 1105 aaPredicted RBP20.29■□□□□ 0.84
SMPD3-212ENST00000574662 SMC4Q9NTJ3 1288 aa20.29■□□□□ 0.84
SMPD3-212ENST00000574662 PALLDQ8WX93 1383 aa20.29■□□□□ 0.84
SMPD3-212ENST00000574662 PLIN1O60240 522 aa20.29■□□□□ 0.84
SMPD3-212ENST00000574662 BACH2Q9BYV9 841 aa20.29■□□□□ 0.84
SMPD3-212ENST00000574662 BCL11AQ9H165 835 aa20.29■□□□□ 0.84
SMPD3-212ENST00000574662 BTAF1O14981 1849 aa20.28■□□□□ 0.84
SMPD3-212ENST00000574662 CCDC30Q5VVM6 783 aa20.28■□□□□ 0.84
SMPD3-212ENST00000574662 DNAJC10Q8IXB1 793 aa20.28■□□□□ 0.84
SMPD3-212ENST00000574662 VSIG10Q8N0Z9 540 aa20.28■□□□□ 0.84
SMPD3-212ENST00000574662 LOC102724428A0A0B4J2F2 783 aa20.27■□□□□ 0.84
SMPD3-212ENST00000574662 SIK1P57059 783 aa20.27■□□□□ 0.84
SMPD3-212ENST00000574662 C5P01031 1676 aa20.27■□□□□ 0.84
SMPD3-212ENST00000574662 SLC4A2P04920 1241 aa20.26■□□□□ 0.83
SMPD3-212ENST00000574662 KCNQ4P56696 695 aa20.26■□□□□ 0.83
SMPD3-212ENST00000574662 CHPF2Q9P2E5 772 aa20.26■□□□□ 0.83
SMPD3-212ENST00000574662 ANXA1P04083 346 aa20.25■□□□□ 0.83
SMPD3-212ENST00000574662 BRPF1P55201 1214 aaPredicted RBP20.25■□□□□ 0.83
SMPD3-212ENST00000574662 ITPK1Q13572 414 aa20.25■□□□□ 0.83
SMPD3-212ENST00000574662 PDIA6Q15084 440 aa20.25■□□□□ 0.83
SMPD3-212ENST00000574662 PROSER3Q2NL68 480 aa20.25■□□□□ 0.83
SMPD3-212ENST00000574662 G2E3Q7L622 706 aa20.25■□□□□ 0.83
SMPD3-212ENST00000574662 ATP6V1AP38606 617 aa20.24■□□□□ 0.83
SMPD3-212ENST00000574662 PIP4K2AP48426 406 aaPredicted RBP20.24■□□□□ 0.83
SMPD3-212ENST00000574662 FRAT1Q92837 279 aaPredicted RBP20.24■□□□□ 0.83
SMPD3-212ENST00000574662 NOB1Q9ULX3 412 aaKnown RBP20.24■□□□□ 0.83
SMPD3-212ENST00000574662 A1BGP04217 495 aa20.23■□□□□ 0.83
SMPD3-212ENST00000574662 CENPQQ7L2Z9 268 aaPredicted RBP20.23■□□□□ 0.83
SMPD3-212ENST00000574662 CYP19A1P11511 503 aaPredicted RBP20.23■□□□□ 0.83
SMPD3-212ENST00000574662 STK31Q9BXU1 1019 aa20.23■□□□□ 0.83
SMPD3-212ENST00000574662 TEX13AQ9BXU3 409 aaPredicted RBP20.23■□□□□ 0.83
SMPD3-212ENST00000574662 TNNQ9UQP3 1299 aa20.23■□□□□ 0.83
SMPD3-212ENST00000574662 KDM2BQ8NHM5 1336 aa20.22■□□□□ 0.83
SMPD3-212ENST00000574662 NBPF26B4DH59 902 aa20.22■□□□□ 0.83
SMPD3-212ENST00000574662 NBPF14Q5TI25 921 aa20.22■□□□□ 0.83
SMPD3-212ENST00000574662 NBPF10Q6P3W6 841 aaKnown RBP20.22■□□□□ 0.83
SMPD3-212ENST00000574662 NBPF15Q8N660 670 aa20.22■□□□□ 0.83
SMPD3-212ENST00000574662 CHMP4AQ9BY43 222 aa20.21■□□□□ 0.83
SMPD3-212ENST00000574662 PHAXQ9H814 394 aaKnown RBP20.21■□□□□ 0.83
SMPD3-212ENST00000574662 DBF4Q9UBU7 674 aaPredicted RBP20.21■□□□□ 0.83
SMPD3-212ENST00000574662 APBA3O96018 575 aa20.21■□□□□ 0.83
SMPD3-212ENST00000574662 DDX21Q9NR30 783 aaKnown RBP eCLIP20.21■□□□□ 0.83
SMPD3-212ENST00000574662 STARD3NLO95772 234 aa20.2■□□□□ 0.82
SMPD3-212ENST00000574662 MYL6BP14649 208 aa20.2■□□□□ 0.82
SMPD3-212ENST00000574662 RTL5Q5HYW3 569 aaPredicted RBP20.2■□□□□ 0.82
SMPD3-212ENST00000574662 C20orf194Q5TEA3 1177 aa20.2■□□□□ 0.82
SMPD3-212ENST00000574662 LRP10Q7Z4F1 713 aa20.2■□□□□ 0.82
SMPD3-212ENST00000574662 PROM2Q8N271 834 aa20.19■□□□□ 0.82
SMPD3-212ENST00000574662 DDRGK1Q96HY6 314 aa20.19■□□□□ 0.82
SMPD3-212ENST00000574662 CCNL1Q9UK58 526 aaPredicted RBP20.19■□□□□ 0.82
SMPD3-212ENST00000574662 TJP1Q07157 1748 aa20.19■□□□□ 0.82
SMPD3-212ENST00000574662 LINC00116Q8NCU8 138 aa20.18■□□□□ 0.82
SMPD3-212ENST00000574662 LRRC4BQ9NT99 713 aa20.18■□□□□ 0.82
SMPD3-212ENST00000574662 DEKP35659 375 aaKnown RBP20.18■□□□□ 0.82
SMPD3-212ENST00000574662 ZKSCAN2Q63HK3 967 aa20.18■□□□□ 0.82
SMPD3-212ENST00000574662 KIF16BQ96L93 1317 aa20.18■□□□□ 0.82
SMPD3-212ENST00000574662 PLSCR1O15162 318 aa20.17■□□□□ 0.82
SMPD3-212ENST00000574662 TRIM27P14373 513 aa20.17■□□□□ 0.82
SMPD3-212ENST00000574662 FLIIQ13045 1269 aa20.17■□□□□ 0.82
SMPD3-212ENST00000574662 NBR1Q14596 966 aa20.17■□□□□ 0.82
SMPD3-212ENST00000574662 INTS5Q6P9B9 1019 aaKnown RBP20.17■□□□□ 0.82
SMPD3-212ENST00000574662 NPM2Q86SE8 214 aaKnown RBP20.17■□□□□ 0.82
SMPD3-212ENST00000574662 HYPKQ9NX55 129 aa20.17■□□□□ 0.82
SMPD3-212ENST00000574662 LAMB4A4D0S4 1761 aa20.17■□□□□ 0.82
SMPD3-212ENST00000574662 CANXP27824 592 aaKnown RBP20.16■□□□□ 0.82
SMPD3-212ENST00000574662 ATF7IPQ6VMQ6 1270 aa20.16■□□□□ 0.82
SMPD3-212ENST00000574662 LY75O60449 1722 aa20.16■□□□□ 0.82
SMPD3-212ENST00000574662 IPO8O15397 1037 aaKnown RBP20.16■□□□□ 0.82
SMPD3-212ENST00000574662 CRKLP46109 303 aaKnown RBP20.16■□□□□ 0.82
SMPD3-212ENST00000574662 ARHGAP45Q92619 1136 aa20.16■□□□□ 0.82
SMPD3-212ENST00000574662 CLUAP1Q96AJ1 413 aa20.16■□□□□ 0.82
SMPD3-212ENST00000574662 ZBTB1Q9Y2K1 713 aa20.16■□□□□ 0.82
SMPD3-212ENST00000574662 ERBB4Q15303 1308 aa20.16■□□□□ 0.82
SMPD3-212ENST00000574662 RLBP1P12271 317 aa20.15■□□□□ 0.82
SMPD3-212ENST00000574662 ZNF831Q5JPB2 1677 aa20.14■□□□□ 0.82
SMPD3-212ENST00000574662 AIMP1Q12904 312 aaKnown RBP20.14■□□□□ 0.81
SMPD3-212ENST00000574662 TXNRD1Q16881 649 aa20.14■□□□□ 0.81
SMPD3-212ENST00000574662 COPS6Q7L5N1 327 aa20.14■□□□□ 0.81
SMPD3-212ENST00000574662 PANK1Q8TE04 598 aa20.14■□□□□ 0.81
SMPD3-212ENST00000574662 XAGE3Q8WTP9 111 aa20.14■□□□□ 0.81
SMPD3-212ENST00000574662 CCDC87Q9NVE4 849 aa20.14■□□□□ 0.81
SMPD3-212ENST00000574662 CCDC125Q86Z20 511 aa20.13■□□□□ 0.81
SMPD3-212ENST00000574662 TNS1Q9HBL0 1735 aaKnown RBP20.13■□□□□ 0.81
SMPD3-212ENST00000574662 CICQ96RK0 1608 aaPredicted RBP20.13■□□□□ 0.81
SMPD3-212ENST00000574662 PTPRCP08575 1304 aa20.13■□□□□ 0.81
SMPD3-212ENST00000574662 F6X3S4 739 aa20.13■□□□□ 0.81
SMPD3-212ENST00000574662 FKBP5Q13451 457 aaPredicted RBP20.13■□□□□ 0.81
SMPD3-212ENST00000574662 SLC27A3Q5K4L6 730 aa20.12■□□□□ 0.81
SMPD3-212ENST00000574662 PDE3AQ14432 1141 aa20.11■□□□□ 0.81
SMPD3-212ENST00000574662 TTLL7Q6ZT98 887 aa20.11■□□□□ 0.81
SMPD3-212ENST00000574662 DZIP1LQ8IYY4 767 aaKnown RBP20.11■□□□□ 0.81
SMPD3-212ENST00000574662 API5Q9BZZ5 524 aaKnown RBP20.11■□□□□ 0.81
SMPD3-212ENST00000574662 CACNA1FO60840 1977 aa20.11■□□□□ 0.81
SMPD3-212ENST00000574662 MYH14Q7Z406 1995 aaKnown RBP20.11■□□□□ 0.81
SMPD3-212ENST00000574662 EN1Q05925 392 aaPredicted RBP20.11■□□□□ 0.81
SMPD3-212ENST00000574662 SMIM5Q71RC9 77 aa20.11■□□□□ 0.81
SMPD3-212ENST00000574662 ZNF330Q9Y3S2 320 aaPredicted RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms