RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 SMARCC1Q92922 1105 aaPredicted RBP30.72■■■□□ 2.51
ATPAF1-213ENST00000574428 EP400Q96L91 3159 aa30.71■■■□□ 2.51
ATPAF1-213ENST00000574428 ANXA1P04083 346 aa30.71■■■□□ 2.51
ATPAF1-213ENST00000574428 DNAJC10Q8IXB1 793 aa30.71■■■□□ 2.51
ATPAF1-213ENST00000574428 BCL11BQ9C0K0 894 aaPredicted RBP30.71■■■□□ 2.51
ATPAF1-213ENST00000574428 IPO8O15397 1037 aaKnown RBP30.7■■■□□ 2.51
ATPAF1-213ENST00000574428 TRIM27P14373 513 aa30.7■■■□□ 2.51
ATPAF1-213ENST00000574428 PROSER3Q2NL68 480 aa30.7■■■□□ 2.51
ATPAF1-213ENST00000574428 ATF7IPQ6VMQ6 1270 aa30.7■■■□□ 2.51
ATPAF1-213ENST00000574428 DBF4Q9UBU7 674 aaPredicted RBP30.7■■■□□ 2.51
ATPAF1-213ENST00000574428 TJP1Q07157 1748 aa30.7■■■□□ 2.5
ATPAF1-213ENST00000574428 CLUAP1Q96AJ1 413 aa30.69■■■□□ 2.5
ATPAF1-213ENST00000574428 LOC102724428A0A0B4J2F2 783 aa30.68■■■□□ 2.5
ATPAF1-213ENST00000574428 TRIM37O94972 964 aa30.68■■■□□ 2.5
ATPAF1-213ENST00000574428 SIK1P57059 783 aa30.68■■■□□ 2.5
ATPAF1-213ENST00000574428 PANK1Q8TE04 598 aa30.68■■■□□ 2.5
ATPAF1-213ENST00000574428 PIP4K2AP48426 406 aaPredicted RBP30.67■■■□□ 2.5
ATPAF1-213ENST00000574428 PDIA6Q15084 440 aa30.67■■■□□ 2.5
ATPAF1-213ENST00000574428 CACNA1FO60840 1977 aa30.67■■■□□ 2.5
ATPAF1-213ENST00000574428 FLIIQ13045 1269 aa30.66■■■□□ 2.5
ATPAF1-213ENST00000574428 TEX13AQ9BXU3 409 aaPredicted RBP30.66■■■□□ 2.5
ATPAF1-213ENST00000574428 PHAXQ9H814 394 aaKnown RBP30.66■■■□□ 2.5
ATPAF1-213ENST00000574428 DDX21Q9NR30 783 aaKnown RBP eCLIP30.66■■■□□ 2.5
ATPAF1-213ENST00000574428 RLBP1P12271 317 aa30.66■■■□□ 2.5
ATPAF1-213ENST00000574428 ARHGAP45Q92619 1136 aa30.66■■■□□ 2.5
ATPAF1-213ENST00000574428 MYL6BP14649 208 aa30.65■■■□□ 2.5
ATPAF1-213ENST00000574428 ATP6V1AP38606 617 aa30.65■■■□□ 2.5
ATPAF1-213ENST00000574428 PDE3AQ14432 1141 aa30.65■■■□□ 2.5
ATPAF1-213ENST00000574428 PTPRCP08575 1304 aa30.64■■■□□ 2.5
ATPAF1-213ENST00000574428 A1BGP04217 495 aa30.64■■■□□ 2.49
ATPAF1-213ENST00000574428 FTSJ3Q8IY81 847 aaKnown RBP30.64■■■□□ 2.49
ATPAF1-213ENST00000574428 DZIP1LQ8IYY4 767 aaKnown RBP30.64■■■□□ 2.49
ATPAF1-213ENST00000574428 STARD3NLO95772 234 aa30.63■■■□□ 2.49
ATPAF1-213ENST00000574428 CRBNQ96SW2 442 aa30.63■■■□□ 2.49
ATPAF1-213ENST00000574428 HYPKQ9NX55 129 aa30.63■■■□□ 2.49
ATPAF1-213ENST00000574428 CICQ96RK0 1608 aaPredicted RBP30.63■■■□□ 2.49
ATPAF1-213ENST00000574428 ITPK1Q13572 414 aa30.62■■■□□ 2.49
ATPAF1-213ENST00000574428 API5Q9BZZ5 524 aaKnown RBP30.62■■■□□ 2.49
ATPAF1-213ENST00000574428 NBPF26B4DH59 902 aa30.61■■■□□ 2.49
ATPAF1-213ENST00000574428 CYP19A1P11511 503 aaPredicted RBP30.61■■■□□ 2.49
ATPAF1-213ENST00000574428 FKBP5Q13451 457 aaPredicted RBP30.61■■■□□ 2.49
ATPAF1-213ENST00000574428 NBPF14Q5TI25 921 aa30.61■■■□□ 2.49
ATPAF1-213ENST00000574428 NBPF10Q6P3W6 841 aaKnown RBP30.61■■■□□ 2.49
ATPAF1-213ENST00000574428 NBPF15Q8N660 670 aa30.61■■■□□ 2.49
ATPAF1-213ENST00000574428 ERBB4Q15303 1308 aa30.61■■■□□ 2.49
ATPAF1-213ENST00000574428 ZNF831Q5JPB2 1677 aa30.6■■■□□ 2.49
ATPAF1-213ENST00000574428 LY75O60449 1722 aa30.6■■■□□ 2.49
ATPAF1-213ENST00000574428 MS4A1P11836 297 aa30.59■■■□□ 2.49
ATPAF1-213ENST00000574428 KCNQ4P56696 695 aa30.59■■■□□ 2.49
ATPAF1-213ENST00000574428 LRP10Q7Z4F1 713 aa30.59■■■□□ 2.49
ATPAF1-213ENST00000574428 EXOC6Q8TAG9 804 aa30.59■■■□□ 2.49
ATPAF1-213ENST00000574428 COG6Q9Y2V7 657 aa30.59■■■□□ 2.49
ATPAF1-213ENST00000574428 ABCC4O15439 1325 aa30.58■■■□□ 2.49
ATPAF1-213ENST00000574428 F6X3S4 739 aa30.56■■■□□ 2.48
ATPAF1-213ENST00000574428 AIMP1Q12904 312 aaKnown RBP30.56■■■□□ 2.48
ATPAF1-213ENST00000574428 TMEM57Q8N5G2 664 aa30.56■■■□□ 2.48
ATPAF1-213ENST00000574428 COL5A3P25940 1745 aaPredicted RBP30.56■■■□□ 2.48
ATPAF1-213ENST00000574428 XAGE3Q8WTP9 111 aa30.55■■■□□ 2.48
ATPAF1-213ENST00000574428 CCNL1Q9UK58 526 aaPredicted RBP30.55■■■□□ 2.48
ATPAF1-213ENST00000574428 COPS6Q7L5N1 327 aa30.54■■■□□ 2.48
ATPAF1-213ENST00000574428 ZBTB1Q9Y2K1 713 aa30.54■■■□□ 2.48
ATPAF1-213ENST00000574428 LINC00116Q8NCU8 138 aa30.53■■■□□ 2.48
ATPAF1-213ENST00000574428 CRKLP46109 303 aaKnown RBP30.52■■■□□ 2.48
ATPAF1-213ENST00000574428 MVPQ14764 893 aaKnown RBP30.52■■■□□ 2.48
ATPAF1-213ENST00000574428 ITPRIPQ8IWB1 547 aa30.52■■■□□ 2.48
ATPAF1-213ENST00000574428 ADCY9O60503 1353 aa30.52■■■□□ 2.48
ATPAF1-213ENST00000574428 TNS1Q9HBL0 1735 aaKnown RBP30.52■■■□□ 2.48
ATPAF1-213ENST00000574428 SLC4A10Q6U841 1118 aa30.51■■■□□ 2.48
ATPAF1-213ENST00000574428 CCDC87Q9NVE4 849 aa30.51■■■□□ 2.48
ATPAF1-213ENST00000574428 ZNF330Q9Y3S2 320 aaPredicted RBP30.51■■■□□ 2.48
ATPAF1-213ENST00000574428 PI4KAP2A4QPH2 592 aa30.51■■■□□ 2.47
ATPAF1-213ENST00000574428 INTS5Q6P9B9 1019 aaKnown RBP30.51■■■□□ 2.47
ATPAF1-213ENST00000574428 PI4KAP1Q8N8J0 262 aa30.51■■■□□ 2.47
ATPAF1-213ENST00000574428 RREB1Q92766 1687 aa30.5■■■□□ 2.47
ATPAF1-213ENST00000574428 APBA3O96018 575 aa30.49■■■□□ 2.47
ATPAF1-213ENST00000574428 DDX58O95786 925 aaKnown RBP30.49■■■□□ 2.47
ATPAF1-213ENST00000574428 KSR2Q6VAB6 950 aa30.48■■■□□ 2.47
ATPAF1-213ENST00000574428 MYH14Q7Z406 1995 aaKnown RBP30.47■■■□□ 2.47
ATPAF1-213ENST00000574428 TTLL7Q6ZT98 887 aa30.47■■■□□ 2.47
ATPAF1-213ENST00000574428 MAP3K2Q9Y2U5 619 aa30.47■■■□□ 2.47
ATPAF1-213ENST00000574428 ERICH6BQ5W0A0 696 aa30.46■■■□□ 2.47
ATPAF1-213ENST00000574428 INTS3Q68E01 1043 aaKnown RBP30.46■■■□□ 2.47
ATPAF1-213ENST00000574428 DNAAF4Q8WXU2 420 aa30.46■■■□□ 2.47
ATPAF1-213ENST00000574428 LRRC4BQ9NT99 713 aa30.46■■■□□ 2.47
ATPAF1-213ENST00000574428 TAF1LQ8IZX4 1826 aa30.46■■■□□ 2.47
ATPAF1-213ENST00000574428 PXDNLA1KZ92 1463 aa30.46■■■□□ 2.47
ATPAF1-213ENST00000574428 IL6STP40189 918 aaPredicted RBP30.44■■■□□ 2.46
ATPAF1-213ENST00000574428 ANKRD13DQ6ZTN6 518 aa30.44■■■□□ 2.46
ATPAF1-213ENST00000574428 RIC3Q7Z5B4 369 aa30.44■■■□□ 2.46
ATPAF1-213ENST00000574428 CNTNAP4Q9C0A0 1308 aa30.44■■■□□ 2.46
ATPAF1-213ENST00000574428 CCT4P50991 539 aaKnown RBP30.43■■■□□ 2.46
ATPAF1-213ENST00000574428 DDX19BQ9UMR2 479 aa30.43■■■□□ 2.46
ATPAF1-213ENST00000574428 SLC27A3Q5K4L6 730 aa30.43■■■□□ 2.46
ATPAF1-213ENST00000574428 N4BP2Q86UW6 1770 aaPredicted RBP30.43■■■□□ 2.46
ATPAF1-213ENST00000574428 ARFGEF2Q9Y6D5 1785 aa30.42■■■□□ 2.46
ATPAF1-213ENST00000574428 PLSCR1O15162 318 aa30.42■■■□□ 2.46
ATPAF1-213ENST00000574428 C4BP0C0L5 1744 aa30.42■■■□□ 2.46
ATPAF1-213ENST00000574428 TXNRD1Q16881 649 aa30.41■■■□□ 2.46
ATPAF1-213ENST00000574428 PROM2Q8N271 834 aa30.41■■■□□ 2.46
ATPAF1-213ENST00000574428 PLBD2Q8NHP8 589 aa30.41■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms