RNA–Protein interactions for RNA: ENST00000573994.1

RPA1-206, Transcript of replication protein A1, humanhuman

TSL 2

Gene RPA1, Length 844 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-206ENST00000573994 U2AF1L5P0DN76 240 aaPredicted RBP13.38□□□□□ -0.27
RPA1-206ENST00000573994 YY1P25490 414 aa13.38□□□□□ -0.27
RPA1-206ENST00000573994 U2AF1Q01081 240 aaKnown RBP eCLIP13.38□□□□□ -0.27
RPA1-206ENST00000573994 PELP1Q8IZL8 1130 aaKnown RBP13.38□□□□□ -0.27
RPA1-206ENST00000573994 RSPH6AQ9H0K4 717 aa13.38□□□□□ -0.27
RPA1-206ENST00000573994 COL5A3P25940 1745 aaPredicted RBP13.37□□□□□ -0.27
RPA1-206ENST00000573994 TJP1Q07157 1748 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 POTEIP0CG38 1075 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 LHX8Q68G74 356 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 GAS2L2Q8NHY3 880 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 PHACTR3Q96KR7 559 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 NUDCQ9Y266 331 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 RTCBQ9Y3I0 505 aaKnown RBP13.37□□□□□ -0.27
RPA1-206ENST00000573994 KCPQ6ZWJ8 1503 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 ZNF831Q5JPB2 1677 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 ADAMTS7Q9UKP4 1686 aa13.37□□□□□ -0.27
RPA1-206ENST00000573994 CRKLP46109 303 aaKnown RBP13.36□□□□□ -0.27
RPA1-206ENST00000573994 DNAJC10Q8IXB1 793 aa13.36□□□□□ -0.27
RPA1-206ENST00000573994 GNAT3A8MTJ3 354 aa13.35□□□□□ -0.27
RPA1-206ENST00000573994 GPR162Q16538 588 aa13.35□□□□□ -0.27
RPA1-206ENST00000573994 TRAPPC3LQ5T215 181 aa13.35□□□□□ -0.27
RPA1-206ENST00000573994 RC3H1Q5TC82 1133 aaKnown RBP13.35□□□□□ -0.27
RPA1-206ENST00000573994 IL17REQ8NFR9 667 aa13.34□□□□□ -0.27
RPA1-206ENST00000573994 ARHGEF1Q92888 912 aaKnown RBP13.34□□□□□ -0.27
RPA1-206ENST00000573994 CICQ96RK0 1608 aaPredicted RBP13.33□□□□□ -0.28
RPA1-206ENST00000573994 RPS6KA4O75676 772 aa13.33□□□□□ -0.28
RPA1-206ENST00000573994 MMP10P09238 476 aa13.33□□□□□ -0.28
RPA1-206ENST00000573994 RFC4P35249 363 aa13.33□□□□□ -0.28
RPA1-206ENST00000573994 TEFQ10587 303 aa13.33□□□□□ -0.28
RPA1-206ENST00000573994 DDX10Q13206 875 aaKnown RBP13.33□□□□□ -0.28
RPA1-206ENST00000573994 FAM212AQ96EL1 285 aa13.33□□□□□ -0.28
RPA1-206ENST00000573994 SRP68Q9UHB9 627 aaKnown RBP13.33□□□□□ -0.28
RPA1-206ENST00000573994 WWC3Q9ULE0 1092 aa13.33□□□□□ -0.28
RPA1-206ENST00000573994 INTS5Q6P9B9 1019 aaKnown RBP13.32□□□□□ -0.28
RPA1-206ENST00000573994 RASEFQ8IZ41 740 aa13.32□□□□□ -0.28
RPA1-206ENST00000573994 TTC5Q8N0Z6 440 aa13.32□□□□□ -0.28
RPA1-206ENST00000573994 MS4A3Q96HJ5 214 aa13.32□□□□□ -0.28
RPA1-206ENST00000573994 CD2APQ9Y5K6 639 aa13.32□□□□□ -0.28
RPA1-206ENST00000573994 C4AP0C0L4 1744 aa13.31□□□□□ -0.28
RPA1-206ENST00000573994 GYS1P13807 737 aa13.31□□□□□ -0.28
RPA1-206ENST00000573994 YBX3P16989 372 aaKnown RBP eCLIP13.31□□□□□ -0.282e-6■■□□□ 11.4
RPA1-206ENST00000573994 MCM10Q7L590 875 aa13.31□□□□□ -0.28
RPA1-206ENST00000573994 CCDC87Q9NVE4 849 aa13.31□□□□□ -0.28
RPA1-206ENST00000573994 CEMIPQ8WUJ3 1361 aa13.31□□□□□ -0.28
RPA1-206ENST00000573994 MYH14Q7Z406 1995 aaKnown RBP13.31□□□□□ -0.28
RPA1-206ENST00000573994 FCHSD2O94868 740 aa13.3□□□□□ -0.28
RPA1-206ENST00000573994 CYP19A1P11511 503 aaPredicted RBP13.3□□□□□ -0.28
RPA1-206ENST00000573994 ZNF496Q96IT1 587 aaPredicted RBP13.3□□□□□ -0.28
RPA1-206ENST00000573994 ZBTB1Q9Y2K1 713 aa13.3□□□□□ -0.28
RPA1-206ENST00000573994 SOS1Q07889 1333 aaPredicted RBP13.3□□□□□ -0.28
RPA1-206ENST00000573994 USP42Q9H9J4 1324 aaKnown RBP13.3□□□□□ -0.28
RPA1-206ENST00000573994 VIRMAQ69YN4 1812 aaKnown RBP13.29□□□□□ -0.28
RPA1-206ENST00000573994 KCNQ3O43525 872 aa13.29□□□□□ -0.28
RPA1-206ENST00000573994 DCTN1Q14203 1278 aa13.29□□□□□ -0.28
RPA1-206ENST00000573994 ZNF790Q6PG37 636 aa13.29□□□□□ -0.28
RPA1-206ENST00000573994 UBR2Q8IWV8 1755 aa13.29□□□□□ -0.28
RPA1-206ENST00000573994 COL15A1P39059 1388 aa13.29□□□□□ -0.28
RPA1-206ENST00000573994 NLGN1Q8N2Q7 840 aa13.28□□□□□ -0.28
RPA1-206ENST00000573994 RTF1Q92541 710 aaKnown RBP13.28□□□□□ -0.28
RPA1-206ENST00000573994 HEG1Q9ULI3 1381 aa13.28□□□□□ -0.28
RPA1-206ENST00000573994 C10orf71Q711Q0 1435 aa13.28□□□□□ -0.28
RPA1-206ENST00000573994 SIPA1L3O60292 1781 aaPredicted RBP13.27□□□□□ -0.28
RPA1-206ENST00000573994 BTBD11A6QL63 1104 aa13.27□□□□□ -0.29
RPA1-206ENST00000573994 CANXP27824 592 aaKnown RBP13.27□□□□□ -0.29
RPA1-206ENST00000573994 DDR1Q08345 913 aa13.27□□□□□ -0.29
RPA1-206ENST00000573994 RALBP1Q15311 655 aa13.27□□□□□ -0.29
RPA1-206ENST00000573994 VSIG10Q8N0Z9 540 aa13.27□□□□□ -0.29
RPA1-206ENST00000573994 KIF12Q96FN5 646 aa13.27□□□□□ -0.29
RPA1-206ENST00000573994 PXDNLA1KZ92 1463 aa13.27□□□□□ -0.29
RPA1-206ENST00000573994 USPL1Q5W0Q7 1092 aa13.26□□□□□ -0.29
RPA1-206ENST00000573994 FMNL2Q96PY5 1086 aa13.26□□□□□ -0.29
RPA1-206ENST00000573994 ZPR1O75312 459 aa13.25□□□□□ -0.29
RPA1-206ENST00000573994 STARD3NLO95772 234 aa13.25□□□□□ -0.29
RPA1-206ENST00000573994 NUBP1P53384 320 aa13.25□□□□□ -0.29
RPA1-206ENST00000573994 ZNF330Q9Y3S2 320 aaPredicted RBP13.25□□□□□ -0.29
RPA1-206ENST00000573994 PARP3Q9Y6F1 533 aa13.25□□□□□ -0.29
RPA1-206ENST00000573994 MYBBP1AQ9BQG0 1328 aaKnown RBP13.24□□□□□ -0.29
RPA1-206ENST00000573994 MAPK8IP3Q9UPT6 1336 aa13.24□□□□□ -0.29
RPA1-206ENST00000573994 NEFMP07197 916 aa13.24□□□□□ -0.29
RPA1-206ENST00000573994 VASPP50552 380 aaPredicted RBP13.24□□□□□ -0.29
RPA1-206ENST00000573994 ZNF784Q8NCA9 323 aaPredicted RBP13.24□□□□□ -0.29
RPA1-206ENST00000573994 PLEKHF1Q96S99 279 aa13.24□□□□□ -0.29
RPA1-206ENST00000573994 THUMPD2Q9BTF0 503 aaKnown RBP13.24□□□□□ -0.29
RPA1-206ENST00000573994 PRAMEF22A3QJZ6 481 aa13.23□□□□□ -0.29
RPA1-206ENST00000573994 GRIN3BO60391 1043 aa13.23□□□□□ -0.29
RPA1-206ENST00000573994 NFE2L2Q16236 605 aa13.23□□□□□ -0.29
RPA1-206ENST00000573994 A0A0G2JLW4 131 aa13.22□□□□□ -0.29
RPA1-206ENST00000573994 POLRMTO00411 1230 aaKnown RBP13.22□□□□□ -0.29
RPA1-206ENST00000573994 A1BGP04217 495 aa13.22□□□□□ -0.29
RPA1-206ENST00000573994 PIP4K2AP48426 406 aaPredicted RBP13.22□□□□□ -0.29
RPA1-206ENST00000573994 ASTLQ6HA08 431 aaPredicted RBP13.22□□□□□ -0.29
RPA1-206ENST00000573994 BCL2L12Q9HB09 334 aa13.22□□□□□ -0.29
RPA1-206ENST00000573994 MIS18AQ9NYP9 233 aa13.22□□□□□ -0.29
RPA1-206ENST00000573994 NARFQ9UHQ1 456 aa13.22□□□□□ -0.29
RPA1-206ENST00000573994 KIAA1551Q9HCM1 1747 aa13.22□□□□□ -0.29
RPA1-206ENST00000573994 HTATSF1O43719 755 aaKnown RBP13.21□□□□□ -0.29
RPA1-206ENST00000573994 DPEP1P16444 411 aa13.21□□□□□ -0.29
RPA1-206ENST00000573994 EIF5P55010 431 aaKnown RBP13.21□□□□□ -0.29
RPA1-206ENST00000573994 NFIXQ14938 502 aa13.21□□□□□ -0.29
RPA1-206ENST00000573994 TEX13AQ9BXU3 409 aaPredicted RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms