RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 NGEFQ8N5V2 710 aa14.42□□□□□ -0.1
CHD3-216ENST00000573936 GPBP1L1Q9HC44 474 aaPredicted RBP14.42□□□□□ -0.1
CHD3-216ENST00000573936 SIPA1L3O60292 1781 aaPredicted RBP14.42□□□□□ -0.1
CHD3-216ENST00000573936 CNTNAP4Q9C0A0 1308 aa14.41□□□□□ -0.1
CHD3-216ENST00000573936 KCPQ6ZWJ8 1503 aa14.41□□□□□ -0.1
CHD3-216ENST00000573936 STARD3NLO95772 234 aa14.41□□□□□ -0.1
CHD3-216ENST00000573936 CCDC27Q2M243 656 aa14.41□□□□□ -0.1
CHD3-216ENST00000573936 AMIGO3Q86WK7 504 aa14.41□□□□□ -0.1
CHD3-216ENST00000573936 MIER1Q8N108 512 aa14.41□□□□□ -0.1
CHD3-216ENST00000573936 ZNF496Q96IT1 587 aaPredicted RBP14.41□□□□□ -0.1
CHD3-216ENST00000573936 HEG1Q9ULI3 1381 aa14.41□□□□□ -0.1
CHD3-216ENST00000573936 KCNQ3O43525 872 aa14.4□□□□□ -0.1
CHD3-216ENST00000573936 PHF14O94880 888 aa14.4□□□□□ -0.1
CHD3-216ENST00000573936 DNAJC10Q8IXB1 793 aa14.4□□□□□ -0.1
CHD3-216ENST00000573936 TSPYL4Q9UJ04 414 aa14.4□□□□□ -0.1
CHD3-216ENST00000573936 RTCBQ9Y3I0 505 aaKnown RBP14.4□□□□□ -0.1
CHD3-216ENST00000573936 CD2APQ9Y5K6 639 aa14.4□□□□□ -0.1
CHD3-216ENST00000573936 GNPATO15228 680 aa14.39□□□□□ -0.11
CHD3-216ENST00000573936 SNRPA1P09661 255 aaKnown RBP14.39□□□□□ -0.11
CHD3-216ENST00000573936 CYP19A1P11511 503 aaPredicted RBP14.39□□□□□ -0.11
CHD3-216ENST00000573936 SSFA2P28290 1259 aa14.39□□□□□ -0.11
CHD3-216ENST00000573936 CRKLP46109 303 aaKnown RBP14.39□□□□□ -0.11
CHD3-216ENST00000573936 SMIM5Q71RC9 77 aa14.39□□□□□ -0.11
CHD3-216ENST00000573936 MIS18AQ9NYP9 233 aa14.39□□□□□ -0.11
CHD3-216ENST00000573936 CICQ96RK0 1608 aaPredicted RBP14.38□□□□□ -0.11
CHD3-216ENST00000573936 CHL1O00533 1208 aa14.38□□□□□ -0.11
CHD3-216ENST00000573936 RPS6KA4O75676 772 aa14.38□□□□□ -0.11
CHD3-216ENST00000573936 ADRA2BP18089 450 aa14.38□□□□□ -0.11
CHD3-216ENST00000573936 POTEDQ86YR6 584 aa14.38□□□□□ -0.11
CHD3-216ENST00000573936 ZNF526Q8TF50 670 aaPredicted RBP14.38□□□□□ -0.11
CHD3-216ENST00000573936 CFAP44Q96MT7 982 aa14.38□□□□□ -0.11
CHD3-216ENST00000573936 CCDC87Q9NVE4 849 aa14.38□□□□□ -0.11
CHD3-216ENST00000573936 LAS1LQ9Y4W2 734 aaKnown RBP14.38□□□□□ -0.11
CHD3-216ENST00000573936 UBR2Q8IWV8 1755 aa14.37□□□□□ -0.11
CHD3-216ENST00000573936 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.37□□□□□ -0.11
CHD3-216ENST00000573936 EIF4A1P60842 406 aaKnown RBP14.37□□□□□ -0.11
CHD3-216ENST00000573936 GNAI1P63096 354 aa14.37□□□□□ -0.11
CHD3-216ENST00000573936 TRAPPC3LQ5T215 181 aa14.37□□□□□ -0.11
CHD3-216ENST00000573936 ATP10DQ9P241 1426 aa14.37□□□□□ -0.11
CHD3-216ENST00000573936 INTS5Q6P9B9 1019 aaKnown RBP14.36□□□□□ -0.11
CHD3-216ENST00000573936 WWC1Q8IX03 1113 aa14.36□□□□□ -0.11
CHD3-216ENST00000573936 IFT57Q9NWB7 429 aa14.36□□□□□ -0.11
CHD3-216ENST00000573936 TJP1Q07157 1748 aa14.35□□□□□ -0.11
CHD3-216ENST00000573936 ZNF853P0CG23 659 aa14.34□□□□□ -0.11
CHD3-216ENST00000573936 HSPA6P17066 643 aa14.34□□□□□ -0.11
CHD3-216ENST00000573936 NPM2Q86SE8 214 aaKnown RBP14.34□□□□□ -0.11
CHD3-216ENST00000573936 WDR63Q8IWG1 891 aa14.34□□□□□ -0.11
CHD3-216ENST00000573936 WWC3Q9ULE0 1092 aa14.34□□□□□ -0.11
CHD3-216ENST00000573936 USP16Q9Y5T5 823 aa14.34□□□□□ -0.11
CHD3-216ENST00000573936 COL5A3P25940 1745 aaPredicted RBP14.34□□□□□ -0.11
CHD3-216ENST00000573936 IL16Q14005 1332 aa14.34□□□□□ -0.11
CHD3-216ENST00000573936 KDM3BQ7LBC6 1761 aa14.33□□□□□ -0.12
CHD3-216ENST00000573936 A0A087WZG4 1122 aa14.33□□□□□ -0.12
CHD3-216ENST00000573936 RFC4P35249 363 aa14.33□□□□□ -0.12
CHD3-216ENST00000573936 ARHGEF1Q92888 912 aaKnown RBP14.33□□□□□ -0.12
CHD3-216ENST00000573936 SALL2Q9Y467 1007 aaPredicted RBP14.33□□□□□ -0.12
CHD3-216ENST00000573936 CANXP27824 592 aaKnown RBP14.32□□□□□ -0.12
CHD3-216ENST00000573936 IL6STP40189 918 aaPredicted RBP14.32□□□□□ -0.12
CHD3-216ENST00000573936 MBIPQ9NS73 344 aa14.32□□□□□ -0.12
CHD3-216ENST00000573936 ZBTB1Q9Y2K1 713 aa14.32□□□□□ -0.12
CHD3-216ENST00000573936 SOS1Q07889 1333 aaPredicted RBP14.32□□□□□ -0.12
CHD3-216ENST00000573936 PRAMEF22A3QJZ6 481 aa14.31□□□□□ -0.12
CHD3-216ENST00000573936 A1BGP04217 495 aa14.31□□□□□ -0.12
CHD3-216ENST00000573936 HOXB7P09629 217 aa14.31□□□□□ -0.12
CHD3-216ENST00000573936 ZPR1O75312 459 aa14.3□□□□□ -0.12
CHD3-216ENST00000573936 EIF5P55010 431 aaKnown RBP14.3□□□□□ -0.12
CHD3-216ENST00000573936 CHMP4AQ9BY43 222 aa14.3□□□□□ -0.12
CHD3-216ENST00000573936 NLGN1Q8N2Q7 840 aa14.29□□□□□ -0.12
CHD3-216ENST00000573936 ERBB4Q15303 1308 aa14.29□□□□□ -0.12
CHD3-216ENST00000573936 COL15A1P39059 1388 aa14.29□□□□□ -0.12
CHD3-216ENST00000573936 C4AP0C0L4 1744 aa14.29□□□□□ -0.12
CHD3-216ENST00000573936 MMP10P09238 476 aa14.28□□□□□ -0.12
CHD3-216ENST00000573936 NARFQ9UHQ1 456 aa14.28□□□□□ -0.12
CHD3-216ENST00000573936 MYH14Q7Z406 1995 aaKnown RBP14.27□□□□□ -0.12
CHD3-216ENST00000573936 KIAA1551Q9HCM1 1747 aa14.27□□□□□ -0.12
CHD3-216ENST00000573936 ADCY9O60503 1353 aa14.27□□□□□ -0.12
CHD3-216ENST00000573936 USP42Q9H9J4 1324 aaKnown RBP14.27□□□□□ -0.12
CHD3-216ENST00000573936 EIF2S2P20042 333 aaKnown RBP14.27□□□□□ -0.13
CHD3-216ENST00000573936 DUSP27Q5VZP5 1158 aa14.27□□□□□ -0.13
CHD3-216ENST00000573936 MYH16Q9H6N6 1097 aa14.27□□□□□ -0.13
CHD3-216ENST00000573936 ZNF330Q9Y3S2 320 aaPredicted RBP14.27□□□□□ -0.13
CHD3-216ENST00000573936 KIF13BQ9NQT8 1826 aa14.27□□□□□ -0.13
CHD3-216ENST00000573936 PXDNLA1KZ92 1463 aa14.26□□□□□ -0.13
CHD3-216ENST00000573936 GYS1P13807 737 aa14.26□□□□□ -0.13
CHD3-216ENST00000573936 USPL1Q5W0Q7 1092 aa14.26□□□□□ -0.13
CHD3-216ENST00000573936 N4BP2Q86UW6 1770 aaPredicted RBP14.26□□□□□ -0.13
CHD3-216ENST00000573936 LAMB4A4D0S4 1761 aa14.25□□□□□ -0.13
CHD3-216ENST00000573936 ZNF521Q96K83 1311 aa14.25□□□□□ -0.13
CHD3-216ENST00000573936 NBPF26B4DH59 902 aa14.25□□□□□ -0.13
CHD3-216ENST00000573936 APLP1P51693 650 aa14.25□□□□□ -0.13
CHD3-216ENST00000573936 GOLGA2Q08379 1002 aa14.25□□□□□ -0.13
CHD3-216ENST00000573936 KRT24Q2M2I5 525 aa14.25□□□□□ -0.13
CHD3-216ENST00000573936 HDGFL1Q5TGJ6 251 aa14.25□□□□□ -0.13
CHD3-216ENST00000573936 NBPF10Q6P3W6 841 aaKnown RBP14.25□□□□□ -0.13
CHD3-216ENST00000573936 DZIP3Q86Y13 1208 aaKnown RBP14.25□□□□□ -0.13
CHD3-216ENST00000573936 NBPF15Q8N660 670 aa14.25□□□□□ -0.13
CHD3-216ENST00000573936 TSR2Q969E8 191 aaKnown RBP14.25□□□□□ -0.13
CHD3-216ENST00000573936 SRP68Q9UHB9 627 aaKnown RBP14.25□□□□□ -0.13
CHD3-216ENST00000573936 C10orf71Q711Q0 1435 aa14.24□□□□□ -0.13
CHD3-216ENST00000573936 PIP4K2AP48426 406 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms