RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 UBR2Q8IWV8 1755 aa26.58■■□□□ 1.85
NUP88-204ENST00000572290 RIPK4P57078 832 aa26.57■■□□□ 1.84
NUP88-204ENST00000572290 PNISRQ8TF01 805 aaKnown RBP26.57■■□□□ 1.84
NUP88-204ENST00000572290 COL15A1P39059 1388 aa26.57■■□□□ 1.84
NUP88-204ENST00000572290 MYH14Q7Z406 1995 aaKnown RBP26.57■■□□□ 1.84
NUP88-204ENST00000572290 ZPR1O75312 459 aa26.56■■□□□ 1.84
NUP88-204ENST00000572290 CCDC146Q8IYE0 955 aa26.56■■□□□ 1.84
NUP88-204ENST00000572290 THUMPD2Q9BTF0 503 aaKnown RBP26.56■■□□□ 1.84
NUP88-204ENST00000572290 ADAMTS8Q9UP79 889 aa26.56■■□□□ 1.84
NUP88-204ENST00000572290 TMPOP42166 694 aaKnown RBP26.55■■□□□ 1.84
NUP88-204ENST00000572290 FKBP8Q14318 412 aa26.55■■□□□ 1.84
NUP88-204ENST00000572290 GPR162Q16538 588 aa26.55■■□□□ 1.84
NUP88-204ENST00000572290 MIS18AQ9NYP9 233 aa26.55■■□□□ 1.84
NUP88-204ENST00000572290 SNRPA1P09661 255 aaKnown RBP26.54■■□□□ 1.84
NUP88-204ENST00000572290 EIF5P55010 431 aaKnown RBP26.54■■□□□ 1.84
NUP88-204ENST00000572290 USPL1Q5W0Q7 1092 aa26.54■■□□□ 1.84
NUP88-204ENST00000572290 RUNDC1Q96C34 613 aa26.54■■□□□ 1.84
NUP88-204ENST00000572290 NARFQ9UHQ1 456 aa26.54■■□□□ 1.84
NUP88-204ENST00000572290 PARP3Q9Y6F1 533 aa26.54■■□□□ 1.84
NUP88-204ENST00000572290 LMOD3Q0VAK6 560 aa26.53■■□□□ 1.84
NUP88-204ENST00000572290 PELP1Q8IZL8 1130 aaKnown RBP26.53■■□□□ 1.84
NUP88-204ENST00000572290 USP16Q9Y5T5 823 aa26.53■■□□□ 1.84
NUP88-204ENST00000572290 A1BGP04217 495 aa26.52■■□□□ 1.84
NUP88-204ENST00000572290 A0A087WZG4 1122 aa26.51■■□□□ 1.83
NUP88-204ENST00000572290 PRAMEF22A3QJZ6 481 aa26.51■■□□□ 1.83
NUP88-204ENST00000572290 IL6STP40189 918 aaPredicted RBP26.51■■□□□ 1.83
NUP88-204ENST00000572290 RRP7AQ9Y3A4 280 aaKnown RBP26.51■■□□□ 1.83
NUP88-204ENST00000572290 ZNF330Q9Y3S2 320 aaPredicted RBP26.5■■□□□ 1.83
NUP88-204ENST00000572290 C4AP0C0L4 1744 aa26.49■■□□□ 1.83
NUP88-204ENST00000572290 NEUROD2Q15784 382 aa26.49■■□□□ 1.83
NUP88-204ENST00000572290 NPM2Q86SE8 214 aaKnown RBP26.49■■□□□ 1.83
NUP88-204ENST00000572290 ANP32CO43423 234 aa26.47■■□□□ 1.83
NUP88-204ENST00000572290 YY1P25490 414 aa26.47■■□□□ 1.83
NUP88-204ENST00000572290 TM4SF1P30408 202 aa26.47■■□□□ 1.83
NUP88-204ENST00000572290 DDR1Q08345 913 aa26.47■■□□□ 1.83
NUP88-204ENST00000572290 BCL2L12Q9HB09 334 aa26.47■■□□□ 1.83
NUP88-204ENST00000572290 EIF4A1P60842 406 aaKnown RBP26.46■■□□□ 1.83
NUP88-204ENST00000572290 TSPYL4Q9UJ04 414 aa26.45■■□□□ 1.82
NUP88-204ENST00000572290 C10orf71Q711Q0 1435 aa26.45■■□□□ 1.82
NUP88-204ENST00000572290 POLRMTO00411 1230 aaKnown RBP26.44■■□□□ 1.82
NUP88-204ENST00000572290 YBX3P16989 372 aaKnown RBP eCLIP26.44■■□□□ 1.82
NUP88-204ENST00000572290 TBC1D2BQ9UPU7 963 aa26.44■■□□□ 1.82
NUP88-204ENST00000572290 GIGYF1O75420 1035 aaPredicted RBP26.43■■□□□ 1.82
NUP88-204ENST00000572290 PIP4K2AP48426 406 aaPredicted RBP26.43■■□□□ 1.82
NUP88-204ENST00000572290 TGFB2P61812 414 aa26.43■■□□□ 1.82
NUP88-204ENST00000572290 NFIXQ14938 502 aa26.43■■□□□ 1.82
NUP88-204ENST00000572290 CCDC184Q52MB2 194 aa26.43■■□□□ 1.82
NUP88-204ENST00000572290 BABAM1Q9NWV8 329 aa26.43■■□□□ 1.82
NUP88-204ENST00000572290 DLG5Q8TDM6 1919 aa26.42■■□□□ 1.82
NUP88-204ENST00000572290 GRIN3BO60391 1043 aa26.42■■□□□ 1.82
NUP88-204ENST00000572290 TRIM35Q9UPQ4 493 aa26.42■■□□□ 1.82
NUP88-204ENST00000572290 DZIP3Q86Y13 1208 aaKnown RBP26.4■■□□□ 1.82
NUP88-204ENST00000572290 PXDNLA1KZ92 1463 aa26.39■■□□□ 1.82
NUP88-204ENST00000572290 NBPF26B4DH59 902 aa26.39■■□□□ 1.82
NUP88-204ENST00000572290 NBPF10Q6P3W6 841 aaKnown RBP26.39■■□□□ 1.82
NUP88-204ENST00000572290 NBPF15Q8N660 670 aa26.39■■□□□ 1.82
NUP88-204ENST00000572290 WWC3Q9ULE0 1092 aa26.39■■□□□ 1.82
NUP88-204ENST00000572290 APAF1O14727 1248 aa26.38■■□□□ 1.81
NUP88-204ENST00000572290 CAMTA2O94983 1202 aa26.38■■□□□ 1.81
NUP88-204ENST00000572290 BICDL1Q6ZP65 573 aa26.38■■□□□ 1.81
NUP88-204ENST00000572290 A0A0G2JLW4 131 aa26.37■■□□□ 1.81
NUP88-204ENST00000572290 SERPINB2P05120 415 aa26.37■■□□□ 1.81
NUP88-204ENST00000572290 TBC1D9BQ66K14 1250 aa26.37■■□□□ 1.81
NUP88-204ENST00000572290 KDM3BQ7LBC6 1761 aa26.36■■□□□ 1.81
NUP88-204ENST00000572290 DPEP1P16444 411 aa26.36■■□□□ 1.81
NUP88-204ENST00000572290 MRS2Q9HD23 443 aa26.35■■□□□ 1.81
NUP88-204ENST00000572290 LAS1LQ9Y4W2 734 aaKnown RBP26.35■■□□□ 1.81
NUP88-204ENST00000572290 CHL1O00533 1208 aa26.34■■□□□ 1.81
NUP88-204ENST00000572290 UTRNP46939 3433 aa26.34■■□□□ 1.81
NUP88-204ENST00000572290 CLEC4GQ6UXB4 293 aa26.31■■□□□ 1.8
NUP88-204ENST00000572290 SETDB2Q96T68 719 aa26.31■■□□□ 1.8
NUP88-204ENST00000572290 ZNF652Q9Y2D9 606 aa26.31■■□□□ 1.8
NUP88-204ENST00000572290 KCNA3P22001 575 aa26.3■■□□□ 1.8
NUP88-204ENST00000572290 NGEFQ8N5V2 710 aa26.3■■□□□ 1.8
NUP88-204ENST00000572290 BCS1LQ9Y276 419 aa26.3■■□□□ 1.8
NUP88-204ENST00000572290 ERBB4Q15303 1308 aa26.3■■□□□ 1.8
NUP88-204ENST00000572290 CARMIL3Q8ND23 1372 aa26.3■■□□□ 1.8
NUP88-204ENST00000572290 SCN7AQ01118 1682 aa26.29■■□□□ 1.8
NUP88-204ENST00000572290 RGL2O15211 777 aa26.29■■□□□ 1.8
NUP88-204ENST00000572290 CFAP44Q96MT7 982 aa26.29■■□□□ 1.8
NUP88-204ENST00000572290 KIF13BQ9NQT8 1826 aa26.29■■□□□ 1.8
NUP88-204ENST00000572290 MYL6BP14649 208 aa26.28■■□□□ 1.8
NUP88-204ENST00000572290 EIF2S2P20042 333 aaKnown RBP26.28■■□□□ 1.8
NUP88-204ENST00000572290 CHRNA5P30532 468 aa26.28■■□□□ 1.8
NUP88-204ENST00000572290 PIM2Q9P1W9 311 aa26.28■■□□□ 1.8
NUP88-204ENST00000572290 CALD1Q05682 793 aaKnown RBP26.27■■□□□ 1.8
NUP88-204ENST00000572290 LAMB4A4D0S4 1761 aa26.26■■□□□ 1.79
NUP88-204ENST00000572290 GOLGB1Q14789 3259 aaKnown RBP26.26■■□□□ 1.79
NUP88-204ENST00000572290 KIAA1551Q9HCM1 1747 aa26.25■■□□□ 1.79
NUP88-204ENST00000572290 KRT24Q2M2I5 525 aa26.25■■□□□ 1.79
NUP88-204ENST00000572290 PRR5LQ6MZQ0 368 aa26.25■■□□□ 1.79
NUP88-204ENST00000572290 NPHP1O15259 732 aa26.24■■□□□ 1.79
NUP88-204ENST00000572290 HLFQ16534 295 aa26.24■■□□□ 1.79
NUP88-204ENST00000572290 KIF6Q6ZMV9 814 aa26.24■■□□□ 1.79
NUP88-204ENST00000572290 TTLL7Q6ZT98 887 aa26.24■■□□□ 1.79
NUP88-204ENST00000572290 ERVV-1B6SEH8 477 aa26.23■■□□□ 1.79
NUP88-204ENST00000572290 ZNF853P0CG23 659 aa26.23■■□□□ 1.79
NUP88-204ENST00000572290 DALRD3Q5D0E6 543 aaKnown RBP26.23■■□□□ 1.79
NUP88-204ENST00000572290 CNBD1Q8NA66 436 aa26.23■■□□□ 1.79
NUP88-204ENST00000572290 MBIPQ9NS73 344 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms