RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ATF7IPQ6VMQ6 1270 aa10.16□□□□□ -0.78
VPS39-213ENST00000570062 FRAT1Q92837 279 aaPredicted RBP10.16□□□□□ -0.78
VPS39-213ENST00000570062 DDX17Q92841 729 aaKnown RBP10.16□□□□□ -0.78
VPS39-213ENST00000570062 API5Q9BZZ5 524 aaKnown RBP10.16□□□□□ -0.78
VPS39-213ENST00000570062 AXIN2Q9Y2T1 843 aa10.16□□□□□ -0.78
VPS39-213ENST00000570062 MARF1Q9Y4F3 1742 aaKnown RBP10.16□□□□□ -0.78
VPS39-213ENST00000570062 CRB1P82279 1406 aa10.16□□□□□ -0.78
VPS39-213ENST00000570062 WDR17Q8IZU2 1322 aa10.15□□□□□ -0.78
VPS39-213ENST00000570062 C2orf72A6NCS6 295 aa10.15□□□□□ -0.78
VPS39-213ENST00000570062 RGL2O15211 777 aa10.15□□□□□ -0.78
VPS39-213ENST00000570062 ZNF530Q6P9A1 599 aaPredicted RBP10.15□□□□□ -0.78
VPS39-213ENST00000570062 MCM10Q7L590 875 aa10.15□□□□□ -0.78
VPS39-213ENST00000570062 DZIP1LQ8IYY4 767 aaKnown RBP10.15□□□□□ -0.78
VPS39-213ENST00000570062 IFNL2Q8IZJ0 200 aa10.15□□□□□ -0.78
VPS39-213ENST00000570062 EXOC6Q8TAG9 804 aa10.15□□□□□ -0.78
VPS39-213ENST00000570062 CARD10Q9BWT7 1032 aa10.15□□□□□ -0.78
VPS39-213ENST00000570062 DDX19BQ9UMR2 479 aa10.15□□□□□ -0.78
VPS39-213ENST00000570062 CEMIPQ8WUJ3 1361 aa10.14□□□□□ -0.79
VPS39-213ENST00000570062 FAM83GA6ND36 823 aa10.14□□□□□ -0.79
VPS39-213ENST00000570062 KIF3CO14782 793 aa10.14□□□□□ -0.79
VPS39-213ENST00000570062 PLIN1O60240 522 aa10.14□□□□□ -0.79
VPS39-213ENST00000570062 CABLES1Q8TDN4 633 aa10.14□□□□□ -0.79
VPS39-213ENST00000570062 SSH1Q8WYL5 1049 aa10.14□□□□□ -0.79
VPS39-213ENST00000570062 UPF1Q92900 1129 aaKnown RBP eCLIP10.14□□□□□ -0.79
VPS39-213ENST00000570062 CRBNQ96SW2 442 aa10.14□□□□□ -0.79
VPS39-213ENST00000570062 XIRP1Q702N8 1843 aaKnown RBP10.14□□□□□ -0.79
VPS39-213ENST00000570062 PTPRCP08575 1304 aa10.13□□□□□ -0.79
VPS39-213ENST00000570062 DCTN1Q14203 1278 aa10.13□□□□□ -0.79
VPS39-213ENST00000570062 CCDC30Q5VVM6 783 aa10.13□□□□□ -0.79
VPS39-213ENST00000570062 TOM1L2Q6ZVM7 507 aa10.13□□□□□ -0.79
VPS39-213ENST00000570062 CENPQQ7L2Z9 268 aaPredicted RBP10.13□□□□□ -0.79
VPS39-213ENST00000570062 IL17REQ8NFR9 667 aa10.13□□□□□ -0.79
VPS39-213ENST00000570062 THUMPD2Q9BTF0 503 aaKnown RBP10.13□□□□□ -0.79
VPS39-213ENST00000570062 CDCA7Q9BWT1 371 aaPredicted RBP10.13□□□□□ -0.79
VPS39-213ENST00000570062 STK31Q9BXU1 1019 aa10.13□□□□□ -0.79
VPS39-213ENST00000570062 AHDC1Q5TGY3 1603 aaPredicted RBP10.13□□□□□ -0.79
VPS39-213ENST00000570062 LTN1O94822 1766 aa10.12□□□□□ -0.79
VPS39-213ENST00000570062 MVPQ14764 893 aaKnown RBP10.12□□□□□ -0.79
VPS39-213ENST00000570062 B4GALNT3Q6L9W6 998 aa10.12□□□□□ -0.79
VPS39-213ENST00000570062 MRPL50Q8N5N7 158 aaKnown RBP10.12□□□□□ -0.79
VPS39-213ENST00000570062 USHBP1Q8N6Y0 703 aa10.12□□□□□ -0.79
VPS39-213ENST00000570062 DCAF5Q96JK2 942 aa10.12□□□□□ -0.79
VPS39-213ENST00000570062 NOB1Q9ULX3 412 aaKnown RBP10.12□□□□□ -0.79
VPS39-213ENST00000570062 NHSL1Q5SYE7 1610 aa10.11□□□□□ -0.79
VPS39-213ENST00000570062 RNMTO43148 476 aaKnown RBP10.11□□□□□ -0.79
VPS39-213ENST00000570062 CHRNA2Q15822 529 aa10.11□□□□□ -0.79
VPS39-213ENST00000570062 ANKRD13DQ6ZTN6 518 aa10.11□□□□□ -0.79
VPS39-213ENST00000570062 C8orf58Q8NAV2 365 aa10.11□□□□□ -0.79
VPS39-213ENST00000570062 CLUAP1Q96AJ1 413 aa10.11□□□□□ -0.79
VPS39-213ENST00000570062 FAM208AQ9UK61 1670 aaKnown RBP10.11□□□□□ -0.79
VPS39-213ENST00000570062 BTBD11A6QL63 1104 aa10.1□□□□□ -0.79
VPS39-213ENST00000570062 IL2RBP14784 551 aa10.1□□□□□ -0.79
VPS39-213ENST00000570062 RWDD1Q9H446 243 aaPredicted RBP10.1□□□□□ -0.79
VPS39-213ENST00000570062 THRAP3Q9Y2W1 955 aaKnown RBP10.1□□□□□ -0.79
VPS39-213ENST00000570062 PCDH11XQ9BZA7 1347 aa10.09□□□□□ -0.79
VPS39-213ENST00000570062 PCDH11YQ9BZA8 1340 aa10.09□□□□□ -0.79
VPS39-213ENST00000570062 CAMTA1Q9Y6Y1 1673 aa10.09□□□□□ -0.79
VPS39-213ENST00000570062 NUDT7P0C024 238 aa10.09□□□□□ -0.79
VPS39-213ENST00000570062 TRIM27P14373 513 aa10.09□□□□□ -0.79
VPS39-213ENST00000570062 PHKG2P15735 406 aa10.09□□□□□ -0.79
VPS39-213ENST00000570062 PTGER2P43116 358 aa10.09□□□□□ -0.79
VPS39-213ENST00000570062 ZCRB1Q8TBF4 217 aaKnown RBP10.09□□□□□ -0.79
VPS39-213ENST00000570062 TMC2Q8TDI7 906 aa10.09□□□□□ -0.79
VPS39-213ENST00000570062 ERVV-2B6SEH9 535 aa10.08□□□□□ -0.8
VPS39-213ENST00000570062 NKX1-1Q15270 411 aaPredicted RBP10.08□□□□□ -0.8
VPS39-213ENST00000570062 C20orf194Q5TEA3 1177 aa10.08□□□□□ -0.8
VPS39-213ENST00000570062 TSPYL6Q8N831 410 aa10.08□□□□□ -0.8
VPS39-213ENST00000570062 BCL2L13Q9BXK5 485 aa10.08□□□□□ -0.8
VPS39-213ENST00000570062 HDAC5Q9UQL6 1122 aa10.08□□□□□ -0.8
VPS39-213ENST00000570062 COG6Q9Y2V7 657 aa10.08□□□□□ -0.8
VPS39-213ENST00000570062 COL5A2P05997 1499 aaPredicted RBP10.08□□□□□ -0.8
VPS39-213ENST00000570062 LMO7Q8WWI1 1683 aa10.07□□□□□ -0.8
VPS39-213ENST00000570062 ELL2O00472 640 aaPredicted RBP10.07□□□□□ -0.8
VPS39-213ENST00000570062 TCERG1O14776 1098 aaKnown RBP10.07□□□□□ -0.8
VPS39-213ENST00000570062 CCT4P50991 539 aaKnown RBP10.07□□□□□ -0.8
VPS39-213ENST00000570062 EIF4A1P60842 406 aaKnown RBP10.07□□□□□ -0.8
VPS39-213ENST00000570062 MPRIPQ6WCQ1 1025 aa10.07□□□□□ -0.8
VPS39-213ENST00000570062 ITPRIPQ8IWB1 547 aa10.07□□□□□ -0.8
VPS39-213ENST00000570062 PANK1Q8TE04 598 aa10.07□□□□□ -0.8
VPS39-213ENST00000570062 SLC52A2Q9HAB3 445 aa10.07□□□□□ -0.8
VPS39-213ENST00000570062 BTG4Q9NY30 223 aa10.07□□□□□ -0.8
VPS39-213ENST00000570062 COL18A1P39060 1754 aa10.06□□□□□ -0.8
VPS39-213ENST00000570062 SLC34A2O95436 690 aa10.06□□□□□ -0.8
VPS39-213ENST00000570062 INTS3Q68E01 1043 aaKnown RBP10.06□□□□□ -0.8
VPS39-213ENST00000570062 LGR6Q9HBX8 967 aa10.06□□□□□ -0.8
VPS39-213ENST00000570062 PCDHGA4Q9Y5G9 962 aa10.06□□□□□ -0.8
VPS39-213ENST00000570062 ABCC4O15439 1325 aa10.06□□□□□ -0.8
VPS39-213ENST00000570062 ROBO1Q9Y6N7 1651 aa10.06□□□□□ -0.8
VPS39-213ENST00000570062 JCADQ9P266 1359 aa10.05□□□□□ -0.8
VPS39-213ENST00000570062 COL22A1Q8NFW1 1626 aaPredicted RBP10.05□□□□□ -0.8
VPS39-213ENST00000570062 CABP4P57796 275 aa10.05□□□□□ -0.8
VPS39-213ENST00000570062 LSM11P83369 360 aaKnown RBP eCLIP10.05□□□□□ -0.8
VPS39-213ENST00000570062 HDAC1Q13547 482 aaPredicted RBP10.05□□□□□ -0.8
VPS39-213ENST00000570062 HDGFL1Q5TGJ6 251 aa10.05□□□□□ -0.8
VPS39-213ENST00000570062 TTC5Q8N0Z6 440 aa10.05□□□□□ -0.8
VPS39-213ENST00000570062 STRN4Q9NRL3 753 aa10.05□□□□□ -0.8
VPS39-213ENST00000570062 DBF4Q9UBU7 674 aaPredicted RBP10.05□□□□□ -0.8
VPS39-213ENST00000570062 SPATA31A6Q5VVP1 1343 aa10.05□□□□□ -0.8
VPS39-213ENST00000570062 CRYBG1Q9Y4K1 1723 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 EXOC5O00471 708 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms