RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 RBM42Q9BTD8 480 aaKnown RBP16■□□□□ 0.15
CDH3-208ENST00000569036 INSRP06213 1382 aa16■□□□□ 0.15
CDH3-208ENST00000569036 CASP8AP2Q9UKL3 1982 aa15.99■□□□□ 0.15
CDH3-208ENST00000569036 TM4SF1P30408 202 aa15.99■□□□□ 0.15
CDH3-208ENST00000569036 NCAPD2Q15021 1401 aa15.99■□□□□ 0.15
CDH3-208ENST00000569036 ROCK2O75116 1388 aaKnown RBP15.99■□□□□ 0.15
CDH3-208ENST00000569036 IQCA1LA6NCM1 817 aa15.98■□□□□ 0.15
CDH3-208ENST00000569036 HSP90AB2PQ58FF8 381 aa15.98■□□□□ 0.15
CDH3-208ENST00000569036 BEGAINQ9BUH8 593 aa15.98■□□□□ 0.15
CDH3-208ENST00000569036 TAF1DQ9H5J8 278 aaPredicted RBP15.98■□□□□ 0.15
CDH3-208ENST00000569036 TSKSQ9UJT2 592 aa15.98■□□□□ 0.15
CDH3-208ENST00000569036 SPG7Q9UQ90 795 aa15.98■□□□□ 0.15
CDH3-208ENST00000569036 ABT1Q9ULW3 272 aaKnown RBP15.96■□□□□ 0.15
CDH3-208ENST00000569036 L3MBTL3Q96JM7 780 aaPredicted RBP15.95■□□□□ 0.14
CDH3-208ENST00000569036 FLT4P35916 1363 aa15.95■□□□□ 0.14
CDH3-208ENST00000569036 PHKG2P15735 406 aa15.94■□□□□ 0.14
CDH3-208ENST00000569036 CRKLP46109 303 aaKnown RBP15.94■□□□□ 0.14
CDH3-208ENST00000569036 EAPPQ56P03 285 aaPredicted RBP15.94■□□□□ 0.14
CDH3-208ENST00000569036 C2CD5Q86YS7 1000 aa15.94■□□□□ 0.14
CDH3-208ENST00000569036 CAPNS2Q96L46 248 aa15.94■□□□□ 0.14
CDH3-208ENST00000569036 TJP1Q07157 1748 aa15.94■□□□□ 0.14
CDH3-208ENST00000569036 DGKZQ13574 1117 aa15.93■□□□□ 0.14
CDH3-208ENST00000569036 LTBP3Q9NS15 1303 aa15.93■□□□□ 0.14
CDH3-208ENST00000569036 CARMIL3Q8ND23 1372 aa15.92■□□□□ 0.14
CDH3-208ENST00000569036 COL11A2P13942 1736 aaPredicted RBP15.92■□□□□ 0.14
CDH3-208ENST00000569036 IFNL2Q8IZJ0 200 aa15.92■□□□□ 0.14
CDH3-208ENST00000569036 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.92■□□□□ 0.14
CDH3-208ENST00000569036 CLEC11AQ9Y240 323 aa15.92■□□□□ 0.14
CDH3-208ENST00000569036 ANKRD31Q8N7Z5 1873 aa15.91■□□□□ 0.14
CDH3-208ENST00000569036 H0YIN7 160 aa15.91■□□□□ 0.14
CDH3-208ENST00000569036 C21orf2O43822 256 aa15.91■□□□□ 0.14
CDH3-208ENST00000569036 ECE1P42892 770 aa15.91■□□□□ 0.14
CDH3-208ENST00000569036 SOX10P56693 466 aa15.91■□□□□ 0.14
CDH3-208ENST00000569036 USPL1Q5W0Q7 1092 aa15.91■□□□□ 0.14
CDH3-208ENST00000569036 MAP1SQ66K74 1059 aaPredicted RBP15.91■□□□□ 0.14
CDH3-208ENST00000569036 PAXIP1Q6ZW49 1069 aaPredicted RBP15.91■□□□□ 0.14
CDH3-208ENST00000569036 CNTROBQ8N137 903 aa15.91■□□□□ 0.14
CDH3-208ENST00000569036 GPR101Q96P66 508 aaPredicted RBP15.91■□□□□ 0.14
CDH3-208ENST00000569036 TAOK3Q9H2K8 898 aa15.91■□□□□ 0.14
CDH3-208ENST00000569036 ZNF219Q9P2Y4 722 aaPredicted RBP15.91■□□□□ 0.14
CDH3-208ENST00000569036 KIF24Q5T7B8 1368 aa15.9■□□□□ 0.14
CDH3-208ENST00000569036 GRM1Q13255 1194 aa15.9■□□□□ 0.14
CDH3-208ENST00000569036 NFIXQ14938 502 aa15.9■□□□□ 0.14
CDH3-208ENST00000569036 CYP4F22Q6NT55 531 aa15.9■□□□□ 0.14
CDH3-208ENST00000569036 TONSLQ96HA7 1378 aa15.89■□□□□ 0.13
CDH3-208ENST00000569036 L3MBTL2Q969R5 705 aa15.89■□□□□ 0.13
CDH3-208ENST00000569036 CACNA1SQ13698 1873 aa15.88■□□□□ 0.13
CDH3-208ENST00000569036 ZPR1O75312 459 aa15.88■□□□□ 0.13
CDH3-208ENST00000569036 HACL1Q9UJ83 578 aa15.88■□□□□ 0.13
CDH3-208ENST00000569036 TRPM7Q96QT4 1865 aa15.87■□□□□ 0.13
CDH3-208ENST00000569036 ERVV-2B6SEH9 535 aa15.87■□□□□ 0.13
CDH3-208ENST00000569036 CA12O43570 354 aa15.87■□□□□ 0.13
CDH3-208ENST00000569036 SERPINB2P05120 415 aa15.87■□□□□ 0.13
CDH3-208ENST00000569036 EPHX2P34913 555 aa15.87■□□□□ 0.13
CDH3-208ENST00000569036 GGNBP2Q9H3C7 697 aa15.87■□□□□ 0.13
CDH3-208ENST00000569036 DDX21Q9NR30 783 aaKnown RBP eCLIP15.87■□□□□ 0.13
CDH3-208ENST00000569036 AOC2O75106 756 aa15.86■□□□□ 0.13
CDH3-208ENST00000569036 PTCD1O75127 700 aaKnown RBP15.86■□□□□ 0.13
CDH3-208ENST00000569036 INTS5Q6P9B9 1019 aaKnown RBP15.86■□□□□ 0.13
CDH3-208ENST00000569036 ZNF622Q969S3 477 aaKnown RBP eCLIP15.86■□□□□ 0.13
CDH3-208ENST00000569036 PUS7Q96PZ0 661 aaKnown RBP15.86■□□□□ 0.13
CDH3-208ENST00000569036 SLX4Q8IY92 1834 aa15.86■□□□□ 0.13
CDH3-208ENST00000569036 ZNF541Q9H0D2 1346 aa15.86■□□□□ 0.13
CDH3-208ENST00000569036 KIF20BQ96Q89 1820 aa15.85■□□□□ 0.13
CDH3-208ENST00000569036 FYB1O15117 783 aa15.85■□□□□ 0.13
CDH3-208ENST00000569036 MAP2K2P36507 400 aa15.85■□□□□ 0.13
CDH3-208ENST00000569036 PNMA8AQ86V59 439 aaPredicted RBP15.85■□□□□ 0.13
CDH3-208ENST00000569036 ANKRD26Q9UPS8 1709 aa15.85■□□□□ 0.13
CDH3-208ENST00000569036 ARFGEF2Q9Y6D5 1785 aa15.85■□□□□ 0.13
CDH3-208ENST00000569036 FMR1Q06787 632 aaKnown RBP eCLIP15.83■□□□□ 0.12
CDH3-208ENST00000569036 BCL2L12Q9HB09 334 aa15.83■□□□□ 0.12
CDH3-208ENST00000569036 EMILIN1Q9Y6C2 1016 aa15.83■□□□□ 0.12
CDH3-208ENST00000569036 SOS1Q07889 1333 aaPredicted RBP15.83■□□□□ 0.12
CDH3-208ENST00000569036 EYA1Q99502 592 aa15.82■□□□□ 0.12
CDH3-208ENST00000569036 NARFQ9UHQ1 456 aa15.82■□□□□ 0.12
CDH3-208ENST00000569036 RNF123Q5XPI4 1314 aa15.82■□□□□ 0.12
CDH3-208ENST00000569036 GCC1Q96CN9 775 aa15.81■□□□□ 0.12
CDH3-208ENST00000569036 TLL2Q9Y6L7 1015 aa15.81■□□□□ 0.12
CDH3-208ENST00000569036 COL15A1P39059 1388 aa15.8■□□□□ 0.12
CDH3-208ENST00000569036 BRPF1P55201 1214 aaPredicted RBP15.8■□□□□ 0.12
CDH3-208ENST00000569036 CABP4P57796 275 aa15.8■□□□□ 0.12
CDH3-208ENST00000569036 CST9Q5W186 159 aa15.8■□□□□ 0.12
CDH3-208ENST00000569036 PDZRN3Q9UPQ7 1066 aa15.8■□□□□ 0.12
CDH3-208ENST00000569036 HSP90AB1P08238 724 aaKnown RBP15.78■□□□□ 0.12
CDH3-208ENST00000569036 PDE6BP35913 854 aa15.78■□□□□ 0.12
CDH3-208ENST00000569036 SOGA3Q5TF21 947 aa15.78■□□□□ 0.12
CDH3-208ENST00000569036 PRPF40BQ6NWY9 871 aaKnown RBP15.78■□□□□ 0.12
CDH3-208ENST00000569036 BRIP1Q9BX63 1249 aa15.78■□□□□ 0.12
CDH3-208ENST00000569036 HABP4Q5JVS0 413 aaKnown RBP15.77■□□□□ 0.12
CDH3-208ENST00000569036 TRAF5O00463 557 aa15.76■□□□□ 0.11
CDH3-208ENST00000569036 CIAPIN1Q6FI81 312 aa15.76■□□□□ 0.11
CDH3-208ENST00000569036 BICDL1Q6ZP65 573 aa15.76■□□□□ 0.11
CDH3-208ENST00000569036 DNAJC10Q8IXB1 793 aa15.76■□□□□ 0.11
CDH3-208ENST00000569036 CARD11Q9BXL7 1154 aa15.76■□□□□ 0.11
CDH3-208ENST00000569036 PPM1GO15355 546 aaPredicted RBP15.75■□□□□ 0.11
CDH3-208ENST00000569036 CCDC24Q8N4L8 307 aa15.75■□□□□ 0.11
CDH3-208ENST00000569036 CNKSR1Q969H4 720 aa15.75■□□□□ 0.11
CDH3-208ENST00000569036 WASHC2AQ641Q2 1341 aa15.74■□□□□ 0.11
CDH3-208ENST00000569036 STYK1Q6J9G0 422 aa15.74■□□□□ 0.11
CDH3-208ENST00000569036 PRR5LQ6MZQ0 368 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms