RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GJB2P29033 226 aa17.37■□□□□ 0.37
VPS35-210ENST00000568784 CBX1P83916 185 aa17.37■□□□□ 0.37
VPS35-210ENST00000568784 ARHGEF40Q8TER5 1519 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 ZSCAN22P10073 491 aaPredicted RBP17.36■□□□□ 0.37
VPS35-210ENST00000568784 ZKSCAN1P17029 563 aaPredicted RBP17.36■□□□□ 0.37
VPS35-210ENST00000568784 CEBPZQ03701 1054 aaKnown RBP17.36■□□□□ 0.37
VPS35-210ENST00000568784 RASEFQ8IZ41 740 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 PDRG1Q9NUG6 133 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 LIMCH1Q9UPQ0 1083 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 HECW2Q9P2P5 1572 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 PI4KAP2A4QPH2 592 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 NOLC1Q14978 699 aaKnown RBP eCLIP17.36■□□□□ 0.374e-8■■□□□ 11.8
VPS35-210ENST00000568784 PI4KAP1Q8N8J0 262 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 ABTB2Q8N961 1025 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 MAP7D2Q96T17 732 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 TFIP11Q9UBB9 837 aaKnown RBP17.36■□□□□ 0.37
VPS35-210ENST00000568784 USP32Q8NFA0 1604 aa17.36■□□□□ 0.37
VPS35-210ENST00000568784 ZNF592Q92610 1267 aa17.35■□□□□ 0.37
VPS35-210ENST00000568784 ZHX1Q9UKY1 873 aaPredicted RBP17.35■□□□□ 0.37
VPS35-210ENST00000568784 PA2G4Q9UQ80 394 aaKnown RBP17.35■□□□□ 0.37
VPS35-210ENST00000568784 NEURL4Q96JN8 1562 aa17.35■□□□□ 0.37
VPS35-210ENST00000568784 PPFIA3O75145 1194 aa17.35■□□□□ 0.37
VPS35-210ENST00000568784 USP44Q9H0E7 712 aa17.35■□□□□ 0.37
VPS35-210ENST00000568784 FRMPD1Q5SYB0 1578 aa17.35■□□□□ 0.37
VPS35-210ENST00000568784 NBPF7P0C2Y1 421 aaPredicted RBP17.35■□□□□ 0.37
VPS35-210ENST00000568784 LARP1BQ659C4 914 aaKnown RBP17.35■□□□□ 0.37
VPS35-210ENST00000568784 HSP90B1P14625 803 aaKnown RBP17.34■□□□□ 0.37
VPS35-210ENST00000568784 ANAPC15P60006 121 aa17.34■□□□□ 0.37
VPS35-210ENST00000568784 SNX14Q9Y5W7 946 aa17.34■□□□□ 0.37
VPS35-210ENST00000568784 BICD2Q8TD16 824 aa17.34■□□□□ 0.37
VPS35-210ENST00000568784 RUFY2Q8WXA3 655 aa17.34■□□□□ 0.37
VPS35-210ENST00000568784 KIF1BPQ96EK5 621 aa17.34■□□□□ 0.37
VPS35-210ENST00000568784 INTS4Q96HW7 963 aaKnown RBP17.34■□□□□ 0.37
VPS35-210ENST00000568784 DYNC1I1O14576 645 aa17.34■□□□□ 0.37
VPS35-210ENST00000568784 CYP46A1Q9Y6A2 500 aa17.34■□□□□ 0.37
VPS35-210ENST00000568784 KIF24Q5T7B8 1368 aa17.34■□□□□ 0.37
VPS35-210ENST00000568784 MAP2P11137 1827 aaKnown RBP17.33■□□□□ 0.37
VPS35-210ENST00000568784 MCM5P33992 734 aa17.33■□□□□ 0.37
VPS35-210ENST00000568784 CCDC8Q9H0W5 538 aaPredicted RBP17.33■□□□□ 0.36
VPS35-210ENST00000568784 OSBPL3Q9H4L5 887 aa17.33■□□□□ 0.36
VPS35-210ENST00000568784 CEBPAP49715 358 aaPredicted RBP17.33■□□□□ 0.36
VPS35-210ENST00000568784 CUL4AQ13619 759 aa17.33■□□□□ 0.36
VPS35-210ENST00000568784 AACSQ86V21 672 aa17.33■□□□□ 0.36
VPS35-210ENST00000568784 GPATCH3Q96I76 525 aa17.33■□□□□ 0.36
VPS35-210ENST00000568784 FAM184AQ8NB25 1140 aa17.32■□□□□ 0.36
VPS35-210ENST00000568784 CHPF2Q9P2E5 772 aa17.32■□□□□ 0.36
VPS35-210ENST00000568784 PIK3C2BO00750 1634 aa17.32■□□□□ 0.36
VPS35-210ENST00000568784 F13A1P00488 732 aa17.32■□□□□ 0.36
VPS35-210ENST00000568784 ALKQ9UM73 1620 aa17.32■□□□□ 0.36
VPS35-210ENST00000568784 SPDYE4A6NLX3 237 aa17.32■□□□□ 0.36
VPS35-210ENST00000568784 UBE2HP62256 183 aa17.32■□□□□ 0.36
VPS35-210ENST00000568784 SOS1Q07889 1333 aaPredicted RBP17.32■□□□□ 0.36
VPS35-210ENST00000568784 CDK12Q9NYV4 1490 aaPredicted RBP17.32■□□□□ 0.36
VPS35-210ENST00000568784 KIAA0232Q92628 1395 aa17.32■□□□□ 0.36
VPS35-210ENST00000568784 LARGE1O95461 756 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 TRIM5Q9C035 493 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 GOLGA6L6A8MZA4 724 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 RAB11FIP3O75154 756 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 FSD1Q9BTV5 496 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 CPS1P31327 1500 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 AATKQ6ZMQ8 1374 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 ATP7BP35670 1465 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 HSPA4P34932 840 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 BOLA2Q9H3K6 86 aa17.31■□□□□ 0.36
VPS35-210ENST00000568784 SGSM2O43147 1006 aa17.3■□□□□ 0.36
VPS35-210ENST00000568784 RUFY3Q7L099 469 aa17.3■□□□□ 0.36
VPS35-210ENST00000568784 KIF3AQ9Y496 699 aa17.3■□□□□ 0.36
VPS35-210ENST00000568784 MPRIPQ6WCQ1 1025 aa17.3■□□□□ 0.36
VPS35-210ENST00000568784 EID1Q9Y6B2 187 aa17.3■□□□□ 0.36
VPS35-210ENST00000568784 CCDC192P0DO97 292 aa17.29■□□□□ 0.36
VPS35-210ENST00000568784 IGSF3O75054 1194 aa17.29■□□□□ 0.36
VPS35-210ENST00000568784 ADCK5Q3MIX3 580 aa17.29■□□□□ 0.36
VPS35-210ENST00000568784 IL17REQ8NFR9 667 aa17.29■□□□□ 0.36
VPS35-210ENST00000568784 DNAAF4Q8WXU2 420 aa17.29■□□□□ 0.36
VPS35-210ENST00000568784 DDX11Q96FC9 970 aa17.29■□□□□ 0.36
VPS35-210ENST00000568784 PTH1RQ03431 593 aa17.28■□□□□ 0.36
VPS35-210ENST00000568784 G3BP1Q13283 466 aaKnown RBP eCLIP17.28■□□□□ 0.369e-7■■■■□ 19.7
VPS35-210ENST00000568784 H3BQV1 296 aa17.28■□□□□ 0.36
VPS35-210ENST00000568784 KRT85P78386 507 aa17.28■□□□□ 0.36
VPS35-210ENST00000568784 HMGN5P82970 282 aaKnown RBP17.28■□□□□ 0.36
VPS35-210ENST00000568784 IFFO2Q5TF58 517 aa17.28■□□□□ 0.36
VPS35-210ENST00000568784 AMOTL2Q9Y2J4 779 aa17.28■□□□□ 0.36
VPS35-210ENST00000568784 RGS12O14924 1447 aa17.27■□□□□ 0.36
VPS35-210ENST00000568784 KCNQ3O43525 872 aa17.27■□□□□ 0.36
VPS35-210ENST00000568784 GLRX3O76003 335 aaKnown RBP17.27■□□□□ 0.36
VPS35-210ENST00000568784 NUP62CLQ9H1M0 184 aa17.27■□□□□ 0.36
VPS35-210ENST00000568784 TNMDQ9H2S6 317 aa17.27■□□□□ 0.36
VPS35-210ENST00000568784 RAD50Q92878 1312 aa17.27■□□□□ 0.36
VPS35-210ENST00000568784 LETM1O95202 739 aaPredicted RBP17.27■□□□□ 0.36
VPS35-210ENST00000568784 C16orf45Q96MC5 204 aaPredicted RBP17.27■□□□□ 0.36
VPS35-210ENST00000568784 HSP90AB4PQ58FF6 505 aa17.27■□□□□ 0.35
VPS35-210ENST00000568784 LUZP1Q86V48 1076 aa17.27■□□□□ 0.35
VPS35-210ENST00000568784 SIGLEC1Q9BZZ2 1709 aa17.27■□□□□ 0.35
VPS35-210ENST00000568784 KDM4AO75164 1064 aa17.26■□□□□ 0.35
VPS35-210ENST00000568784 CWF19L2Q2TBE0 894 aaKnown RBP17.26■□□□□ 0.35
VPS35-210ENST00000568784 PPP4R3BQ5MIZ7 849 aa17.26■□□□□ 0.35
VPS35-210ENST00000568784 LGR6Q9HBX8 967 aa17.26■□□□□ 0.35
VPS35-210ENST00000568784 ZNF530Q6P9A1 599 aaPredicted RBP17.26■□□□□ 0.35
VPS35-210ENST00000568784 MTERF4Q7Z6M4 381 aaKnown RBP17.26■□□□□ 0.35
VPS35-210ENST00000568784 CPSF1Q10570 1443 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms