RNA–Protein interactions for RNA: ENST00000568566.5

TSC2-223, Transcript of TSC complex subunit 2, human

TSL 3

Gene TSC2, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-223	ENST00000568566	HSP90AB1	P08238	724 aa	Known RBP	11.25	□□□□□ -0.61
TSC2-223	ENST00000568566	HMOX1	P09601	288 aa		11.25	□□□□□ -0.61
TSC2-223	ENST00000568566	JMY	Q8N9B5	988 aa		11.25	□□□□□ -0.61
TSC2-223	ENST00000568566	USP42	Q9H9J4	1324 aa	Known RBP	11.25	□□□□□ -0.61
TSC2-223	ENST00000568566	RASSF7	Q02833	373 aa		11.24	□□□□□ -0.61
TSC2-223	ENST00000568566	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.24	□□□□□ -0.61
TSC2-223	ENST00000568566	DIAPH1	O60610	1272 aa	Known RBP	11.23	□□□□□ -0.61
TSC2-223	ENST00000568566	RALBP1	Q15311	655 aa		11.23	□□□□□ -0.61
TSC2-223	ENST00000568566	SULT6B1	Q6IMI4	303 aa		11.23	□□□□□ -0.61
TSC2-223	ENST00000568566	TNS4	Q8IZW8	715 aa		11.23	□□□□□ -0.61
TSC2-223	ENST00000568566	SMC1B	Q8NDV3	1235 aa		11.23	□□□□□ -0.61
TSC2-223	ENST00000568566	ADAMTS7	Q9UKP4	1686 aa		11.23	□□□□□ -0.61
TSC2-223	ENST00000568566	POLRMT	O00411	1230 aa	Known RBP	11.22	□□□□□ -0.61
TSC2-223	ENST00000568566	U2SURP	O15042	1029 aa	Known RBP	11.22	□□□□□ -0.61
TSC2-223	ENST00000568566	C1orf141	Q5JVX7	400 aa		11.22	□□□□□ -0.61
TSC2-223	ENST00000568566	TIAM2	Q8IVF5	1701 aa		11.21	□□□□□ -0.61
TSC2-223	ENST00000568566	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.21	□□□□□ -0.61
TSC2-223	ENST00000568566	AMOT	Q4VCS5	1084 aa		11.21	□□□□□ -0.61
TSC2-223	ENST00000568566	NFATC2IP	Q8NCF5	419 aa		11.21	□□□□□ -0.61
TSC2-223	ENST00000568566	AFDN	P55196	1824 aa	Known RBP	11.21	□□□□□ -0.62
TSC2-223	ENST00000568566	ZPR1	O75312	459 aa		11.2	□□□□□ -0.62
TSC2-223	ENST00000568566	USPL1	Q5W0Q7	1092 aa		11.2	□□□□□ -0.62
TSC2-223	ENST00000568566	INTS5	Q6P9B9	1019 aa	Known RBP	11.2	□□□□□ -0.62
TSC2-223	ENST00000568566	PHACTR3	Q96KR7	559 aa		11.2	□□□□□ -0.62
TSC2-223	ENST00000568566	SCN11A	Q9UI33	1791 aa		11.2	□□□□□ -0.62
TSC2-223	ENST00000568566	DLEC1	Q9Y238	1755 aa		11.2	□□□□□ -0.62
TSC2-223	ENST00000568566	TM4SF1	P30408	202 aa		11.19	□□□□□ -0.62
TSC2-223	ENST00000568566	PRELP	P51888	382 aa		11.19	□□□□□ -0.62
TSC2-223	ENST00000568566	DNAJC10	Q8IXB1	793 aa		11.19	□□□□□ -0.62
TSC2-223	ENST00000568566	SOS1	Q07889	1333 aa	Predicted RBP	11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	HSPA1A	P0DMV8	641 aa	Known RBP	11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	HSPA1B	P0DMV9	641 aa	Known RBP	11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	LMNB1	P20700	586 aa		11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	NFIX	Q14938	502 aa		11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	MIER1	Q8N108	512 aa		11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	RSPH6A	Q9H0K4	717 aa		11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	NRXN2	Q9P2S2	1712 aa		11.18	□□□□□ -0.62
TSC2-223	ENST00000568566	COL15A1	P39059	1388 aa		11.17	□□□□□ -0.62
TSC2-223	ENST00000568566	CARMIL3	Q8ND23	1372 aa		11.17	□□□□□ -0.62
TSC2-223	ENST00000568566	CCDC88A	Q3V6T2	1871 aa		11.17	□□□□□ -0.62
TSC2-223	ENST00000568566	GLTPD2	A6NH11	291 aa		11.17	□□□□□ -0.62
TSC2-223	ENST00000568566	ANP32C	O43423	234 aa		11.17	□□□□□ -0.62
TSC2-223	ENST00000568566	VEGFA	P15692	232 aa	Predicted RBP	11.17	□□□□□ -0.62
TSC2-223	ENST00000568566	PRKAR2B	P31323	418 aa		11.17	□□□□□ -0.62
TSC2-223	ENST00000568566	CFAP53	Q96M91	514 aa		11.17	□□□□□ -0.62
TSC2-223	ENST00000568566	MTHFSD	Q2M296	383 aa	Known RBP	11.16	□□□□□ -0.62
TSC2-223	ENST00000568566	DIEXF	Q68CQ4	756 aa	Known RBP	11.16	□□□□□ -0.62
TSC2-223	ENST00000568566	C2CD5	Q86YS7	1000 aa		11.16	□□□□□ -0.62
TSC2-223	ENST00000568566	CCDC146	Q8IYE0	955 aa		11.16	□□□□□ -0.62
TSC2-223	ENST00000568566	ADAMTS8	Q9UP79	889 aa		11.16	□□□□□ -0.62
TSC2-223	ENST00000568566	ZBTB1	Q9Y2K1	713 aa		11.16	□□□□□ -0.62
TSC2-223	ENST00000568566	MRC1	P22897	1456 aa		11.16	□□□□□ -0.62
TSC2-223	ENST00000568566	VIRMA	Q69YN4	1812 aa	Known RBP	11.15	□□□□□ -0.62
TSC2-223	ENST00000568566	NFKBIE	O00221	500 aa		11.15	□□□□□ -0.62
TSC2-223	ENST00000568566	CYP19A1	P11511	503 aa	Predicted RBP	11.15	□□□□□ -0.62
TSC2-223	ENST00000568566	SLC39A6	Q13433	755 aa		11.15	□□□□□ -0.62
TSC2-223	ENST00000568566	TTLL6	Q8N841	843 aa		11.15	□□□□□ -0.62
TSC2-223	ENST00000568566	SLC52A2	Q9HAB3	445 aa		11.15	□□□□□ -0.62
TSC2-223	ENST00000568566	BCL2L12	Q9HB09	334 aa		11.15	□□□□□ -0.62
TSC2-223	ENST00000568566	NARF	Q9UHQ1	456 aa		11.15	□□□□□ -0.62
TSC2-223	ENST00000568566	SERPINB2	P05120	415 aa		11.14	□□□□□ -0.63
TSC2-223	ENST00000568566	BICDL1	Q6ZP65	573 aa		11.14	□□□□□ -0.63
TSC2-223	ENST00000568566	PLEKHF1	Q96S99	279 aa		11.14	□□□□□ -0.63
TSC2-223	ENST00000568566	LGR6	Q9HBX8	967 aa		11.14	□□□□□ -0.63
TSC2-223	ENST00000568566	ANKRD31	Q8N7Z5	1873 aa		11.13	□□□□□ -0.63
TSC2-223	ENST00000568566	COL11A2	P13942	1736 aa	Predicted RBP	11.13	□□□□□ -0.63
TSC2-223	ENST00000568566	AKAP4	Q5JQC9	854 aa		11.13	□□□□□ -0.63
TSC2-223	ENST00000568566	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.13	□□□□□ -0.63
TSC2-223	ENST00000568566	POTEC	B2RU33	542 aa		11.12	□□□□□ -0.63
TSC2-223	ENST00000568566		H0YIN7	160 aa		11.12	□□□□□ -0.63
TSC2-223	ENST00000568566	CANX	P27824	592 aa	Known RBP	11.12	□□□□□ -0.63
TSC2-223	ENST00000568566	DCTN1	Q14203	1278 aa		11.12	□□□□□ -0.63
TSC2-223	ENST00000568566	PNISR	Q8TF01	805 aa	Known RBP	11.12	□□□□□ -0.63
TSC2-223	ENST00000568566	MRS2	Q9HD23	443 aa		11.12	□□□□□ -0.63
TSC2-223	ENST00000568566	NUDC	Q9Y266	331 aa		11.12	□□□□□ -0.63
TSC2-223	ENST00000568566	RRP7A	Q9Y3A4	280 aa	Known RBP	11.12	□□□□□ -0.63
TSC2-223	ENST00000568566	SCN7A	Q01118	1682 aa		11.11	□□□□□ -0.63
TSC2-223	ENST00000568566	UBR2	Q8IWV8	1755 aa		11.11	□□□□□ -0.63
TSC2-223	ENST00000568566	RNMT	O43148	476 aa	Known RBP	11.11	□□□□□ -0.63
TSC2-223	ENST00000568566	CCDC24	Q8N4L8	307 aa		11.11	□□□□□ -0.63
TSC2-223	ENST00000568566	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
TSC2-223	ENST00000568566	MKRN1	Q9UHC7	482 aa	Known RBP	11.11	□□□□□ -0.63
TSC2-223	ENST00000568566	DICER1	Q9UPY3	1922 aa	Known RBP	11.11	□□□□□ -0.63
TSC2-223	ENST00000568566	FER1L6	Q2WGJ9	1857 aa		11.1	□□□□□ -0.63
TSC2-223	ENST00000568566	C21orf2	O43822	256 aa		11.1	□□□□□ -0.63
TSC2-223	ENST00000568566	ERFE	Q4G0M1	354 aa		11.1	□□□□□ -0.63
TSC2-223	ENST00000568566	DPY19L2	Q6NUT2	758 aa		11.1	□□□□□ -0.63
TSC2-223	ENST00000568566	IL17RE	Q8NFR9	667 aa		11.1	□□□□□ -0.63
TSC2-223	ENST00000568566	THUMPD2	Q9BTF0	503 aa	Known RBP	11.1	□□□□□ -0.63
TSC2-223	ENST00000568566	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.1	□□□□□ -0.63
TSC2-223	ENST00000568566	CACNA1S	Q13698	1873 aa		11.1	□□□□□ -0.63
TSC2-223	ENST00000568566	POTEI	P0CG38	1075 aa		11.09	□□□□□ -0.63
TSC2-223	ENST00000568566	POTEJ	P0CG39	1038 aa		11.09	□□□□□ -0.63
TSC2-223	ENST00000568566	TBC1D9B	Q66K14	1250 aa		11.09	□□□□□ -0.63
TSC2-223	ENST00000568566	CHADL	Q6NUI6	762 aa		11.09	□□□□□ -0.63
TSC2-223	ENST00000568566	CREBZF	Q9NS37	354 aa		11.09	□□□□□ -0.63
TSC2-223	ENST00000568566	MCM10	Q7L590	875 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms