RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 APBA3O96018 575 aa10.93□□□□□ -0.66
SF3B3-212ENST00000568539 VSIG10Q8N0Z9 540 aa10.93□□□□□ -0.66
SF3B3-212ENST00000568539 RBM42Q9BTD8 480 aaKnown RBP10.93□□□□□ -0.66
SF3B3-212ENST00000568539 SOS1Q07889 1333 aaPredicted RBP10.92□□□□□ -0.66
SF3B3-212ENST00000568539 LOC102724428A0A0B4J2F2 783 aa10.92□□□□□ -0.66
SF3B3-212ENST00000568539 PRAMEF22A3QJZ6 481 aa10.92□□□□□ -0.66
SF3B3-212ENST00000568539 ELL2O00472 640 aaPredicted RBP10.92□□□□□ -0.66
SF3B3-212ENST00000568539 PLSCR1O15162 318 aa10.92□□□□□ -0.66
SF3B3-212ENST00000568539 VAMP4O75379 141 aa10.92□□□□□ -0.66
SF3B3-212ENST00000568539 HOXB7P09629 217 aa10.92□□□□□ -0.66
SF3B3-212ENST00000568539 SNRPA1P09661 255 aaKnown RBP10.92□□□□□ -0.66
SF3B3-212ENST00000568539 SIK1P57059 783 aa10.92□□□□□ -0.66
SF3B3-212ENST00000568539 TWISTNBQ3B726 338 aaPredicted RBP10.92□□□□□ -0.66
SF3B3-212ENST00000568539 ITGB4P16144 1822 aa10.92□□□□□ -0.66
SF3B3-212ENST00000568539 SBF2Q86WG5 1849 aa10.91□□□□□ -0.66
SF3B3-212ENST00000568539 UBR2Q8IWV8 1755 aa10.91□□□□□ -0.66
SF3B3-212ENST00000568539 CT47B1P0C2W7 299 aaPredicted RBP10.91□□□□□ -0.66
SF3B3-212ENST00000568539 BTAF1O14981 1849 aa10.91□□□□□ -0.66
SF3B3-212ENST00000568539 TNS1Q9HBL0 1735 aaKnown RBP10.9□□□□□ -0.66
SF3B3-212ENST00000568539 ATP6V1AP38606 617 aa10.9□□□□□ -0.66
SF3B3-212ENST00000568539 ITPK1Q13572 414 aa10.9□□□□□ -0.66
SF3B3-212ENST00000568539 CCDC125Q86Z20 511 aa10.9□□□□□ -0.66
SF3B3-212ENST00000568539 DNAJC10Q8IXB1 793 aa10.9□□□□□ -0.66
SF3B3-212ENST00000568539 TEX13AQ9BXU3 409 aaPredicted RBP10.9□□□□□ -0.66
SF3B3-212ENST00000568539 CCNL1Q9UK58 526 aaPredicted RBP10.9□□□□□ -0.66
SF3B3-212ENST00000568539 USP16Q9Y5T5 823 aa10.9□□□□□ -0.66
SF3B3-212ENST00000568539 VIRMAQ69YN4 1812 aaKnown RBP10.9□□□□□ -0.66
SF3B3-212ENST00000568539 CYP19A1P11511 503 aaPredicted RBP10.89□□□□□ -0.67
SF3B3-212ENST00000568539 YY1P25490 414 aa10.89□□□□□ -0.67
SF3B3-212ENST00000568539 KCNQ4P56696 695 aa10.89□□□□□ -0.67
SF3B3-212ENST00000568539 SF3B2Q13435 895 aaKnown RBP10.89□□□□□ -0.67
SF3B3-212ENST00000568539 TXNRD1Q16881 649 aa10.89□□□□□ -0.67
SF3B3-212ENST00000568539 SLC27A3Q5K4L6 730 aa10.89□□□□□ -0.67
SF3B3-212ENST00000568539 HDGFL1Q5TGJ6 251 aa10.89□□□□□ -0.67
SF3B3-212ENST00000568539 ZNF428Q96B54 188 aa10.89□□□□□ -0.67
SF3B3-212ENST00000568539 LRRC4BQ9NT99 713 aa10.89□□□□□ -0.67
SF3B3-212ENST00000568539 CICQ96RK0 1608 aaPredicted RBP10.88□□□□□ -0.67
SF3B3-212ENST00000568539 BAG6P46379 1132 aa10.88□□□□□ -0.67
SF3B3-212ENST00000568539 LINC00116Q8NCU8 138 aa10.88□□□□□ -0.67
SF3B3-212ENST00000568539 CAMKK2Q96RR4 588 aa10.88□□□□□ -0.67
SF3B3-212ENST00000568539 ZNF831Q5JPB2 1677 aa10.88□□□□□ -0.67
SF3B3-212ENST00000568539 UTRNP46939 3433 aa10.87□□□□□ -0.67
SF3B3-212ENST00000568539 ECM2O94769 699 aaPredicted RBP10.87□□□□□ -0.67
SF3B3-212ENST00000568539 STARD3NLO95772 234 aa10.87□□□□□ -0.67
SF3B3-212ENST00000568539 EIF2S2P20042 333 aaKnown RBP10.87□□□□□ -0.67
SF3B3-212ENST00000568539 RARSP54136 660 aaKnown RBP10.87□□□□□ -0.67
SF3B3-212ENST00000568539 EN1Q05925 392 aaPredicted RBP10.87□□□□□ -0.67
SF3B3-212ENST00000568539 CCDC30Q5VVM6 783 aa10.87□□□□□ -0.67
SF3B3-212ENST00000568539 NECTIN2Q92692 538 aa10.87□□□□□ -0.67
SF3B3-212ENST00000568539 AKT1S1Q96B36 256 aa10.87□□□□□ -0.67
SF3B3-212ENST00000568539 CHMP4AQ9BY43 222 aa10.87□□□□□ -0.67
SF3B3-212ENST00000568539 ZBTB47Q9UFB7 747 aaPredicted RBP10.87□□□□□ -0.67
SF3B3-212ENST00000568539 LY75O60449 1722 aa10.87□□□□□ -0.67
SF3B3-212ENST00000568539 TJP1Q07157 1748 aa10.87□□□□□ -0.67
SF3B3-212ENST00000568539 ERBB4Q15303 1308 aa10.86□□□□□ -0.67
SF3B3-212ENST00000568539 C5P01031 1676 aa10.86□□□□□ -0.67
SF3B3-212ENST00000568539 TCERG1O14776 1098 aaKnown RBP10.86□□□□□ -0.67
SF3B3-212ENST00000568539 A1BGP04217 495 aa10.86□□□□□ -0.67
SF3B3-212ENST00000568539 CRKLP46109 303 aaKnown RBP10.86□□□□□ -0.67
SF3B3-212ENST00000568539 PDIA6Q15084 440 aa10.86□□□□□ -0.67
SF3B3-212ENST00000568539 EZH2Q15910 746 aaKnown RBP10.86□□□□□ -0.67
SF3B3-212ENST00000568539 ALDH1L2Q3SY69 923 aa10.86□□□□□ -0.67
SF3B3-212ENST00000568539 INTS5Q6P9B9 1019 aaKnown RBP10.86□□□□□ -0.67
SF3B3-212ENST00000568539 SSH1Q8WYL5 1049 aa10.86□□□□□ -0.67
SF3B3-212ENST00000568539 DBF4Q9UBU7 674 aaPredicted RBP10.86□□□□□ -0.67
SF3B3-212ENST00000568539 RCAN3Q9UKA8 241 aa10.86□□□□□ -0.67
SF3B3-212ENST00000568539 CNTNAP4Q9C0A0 1308 aa10.85□□□□□ -0.67
SF3B3-212ENST00000568539 NBPF26B4DH59 902 aa10.85□□□□□ -0.67
SF3B3-212ENST00000568539 R3HDM1Q15032 1099 aaKnown RBP10.85□□□□□ -0.67
SF3B3-212ENST00000568539 PROSER3Q2NL68 480 aa10.85□□□□□ -0.67
SF3B3-212ENST00000568539 NBPF14Q5TI25 921 aa10.85□□□□□ -0.67
SF3B3-212ENST00000568539 NBPF10Q6P3W6 841 aaKnown RBP10.85□□□□□ -0.67
SF3B3-212ENST00000568539 NBPF15Q8N660 670 aa10.85□□□□□ -0.67
SF3B3-212ENST00000568539 DDX21Q9NR30 783 aaKnown RBP eCLIP10.85□□□□□ -0.67
SF3B3-212ENST00000568539 CCDC87Q9NVE4 849 aa10.85□□□□□ -0.67
SF3B3-212ENST00000568539 CHPF2Q9P2E5 772 aa10.85□□□□□ -0.67
SF3B3-212ENST00000568539 RGPD3A6NKT7 1758 aaPredicted RBP10.85□□□□□ -0.67
SF3B3-212ENST00000568539 RGPD4Q7Z3J3 1758 aa10.85□□□□□ -0.67
SF3B3-212ENST00000568539 BCAR3O75815 825 aa10.84□□□□□ -0.67
SF3B3-212ENST00000568539 CENPBP07199 599 aaPredicted RBP10.84□□□□□ -0.67
SF3B3-212ENST00000568539 HMGB2P26583 209 aaKnown RBP10.84□□□□□ -0.67
SF3B3-212ENST00000568539 PIP4K2AP48426 406 aaPredicted RBP10.84□□□□□ -0.67
SF3B3-212ENST00000568539 BRPF1P55201 1214 aaPredicted RBP10.84□□□□□ -0.67
SF3B3-212ENST00000568539 RC3H1Q5TC82 1133 aaKnown RBP10.84□□□□□ -0.67
SF3B3-212ENST00000568539 LRP10Q7Z4F1 713 aa10.84□□□□□ -0.67
SF3B3-212ENST00000568539 MRPL50Q8N5N7 158 aaKnown RBP10.84□□□□□ -0.67
SF3B3-212ENST00000568539 BCL2L13Q9BXK5 485 aa10.84□□□□□ -0.67
SF3B3-212ENST00000568539 STK31Q9BXU1 1019 aa10.84□□□□□ -0.67
SF3B3-212ENST00000568539 SMC4Q9NTJ3 1288 aa10.84□□□□□ -0.67
SF3B3-212ENST00000568539 ZBTB1Q9Y2K1 713 aa10.84□□□□□ -0.67
SF3B3-212ENST00000568539 LAMB4A4D0S4 1761 aa10.83□□□□□ -0.68
SF3B3-212ENST00000568539 ANXA1P04083 346 aa10.83□□□□□ -0.68
SF3B3-212ENST00000568539 MYL6BP14649 208 aa10.83□□□□□ -0.68
SF3B3-212ENST00000568539 CANXP27824 592 aaKnown RBP10.83□□□□□ -0.68
SF3B3-212ENST00000568539 IL6STP40189 918 aaPredicted RBP10.82□□□□□ -0.68
SF3B3-212ENST00000568539 EIF5P55010 431 aaKnown RBP10.82□□□□□ -0.68
SF3B3-212ENST00000568539 G2E3Q7L622 706 aa10.82□□□□□ -0.68
SF3B3-212ENST00000568539 PHAXQ9H814 394 aaKnown RBP10.82□□□□□ -0.68
SF3B3-212ENST00000568539 HYPKQ9NX55 129 aa10.82□□□□□ -0.68
SF3B3-212ENST00000568539 RREB1Q92766 1687 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms