RNA–Protein interactions for RNA: ENST00000568292.1

CDH3-207, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-207ENST00000568292 NPM2Q86SE8 214 aaKnown RBP13.57□□□□□ -0.24
CDH3-207ENST00000568292 ZBTB1Q9Y2K1 713 aa13.57□□□□□ -0.24
CDH3-207ENST00000568292 USP42Q9H9J4 1324 aaKnown RBP13.57□□□□□ -0.24
CDH3-207ENST00000568292 GRIN3BO60391 1043 aa13.56□□□□□ -0.24
CDH3-207ENST00000568292 TM4SF1P30408 202 aa13.56□□□□□ -0.24
CDH3-207ENST00000568292 RIPK4P57078 832 aa13.56□□□□□ -0.24
CDH3-207ENST00000568292 FKBP8Q14318 412 aa13.56□□□□□ -0.24
CDH3-207ENST00000568292 USPL1Q5W0Q7 1092 aa13.56□□□□□ -0.24
CDH3-207ENST00000568292 NARFQ9UHQ1 456 aa13.56□□□□□ -0.24
CDH3-207ENST00000568292 COL5A3P25940 1745 aaPredicted RBP13.56□□□□□ -0.24
CDH3-207ENST00000568292 A1BGP04217 495 aa13.55□□□□□ -0.24
CDH3-207ENST00000568292 EIF5P55010 431 aaKnown RBP13.55□□□□□ -0.24
CDH3-207ENST00000568292 TGFB2P61812 414 aa13.55□□□□□ -0.24
CDH3-207ENST00000568292 RUNDC1Q96C34 613 aa13.55□□□□□ -0.24
CDH3-207ENST00000568292 MIS18AQ9NYP9 233 aa13.55□□□□□ -0.24
CDH3-207ENST00000568292 ADAMTS8Q9UP79 889 aa13.55□□□□□ -0.24
CDH3-207ENST00000568292 USP16Q9Y5T5 823 aa13.55□□□□□ -0.24
CDH3-207ENST00000568292 TJP1Q07157 1748 aa13.54□□□□□ -0.24
CDH3-207ENST00000568292 IL6STP40189 918 aaPredicted RBP13.54□□□□□ -0.24
CDH3-207ENST00000568292 TMPOP42166 694 aaKnown RBP13.54□□□□□ -0.24
CDH3-207ENST00000568292 LMOD3Q0VAK6 560 aa13.54□□□□□ -0.24
CDH3-207ENST00000568292 CICQ96RK0 1608 aaPredicted RBP13.53□□□□□ -0.24
CDH3-207ENST00000568292 MYH14Q7Z406 1995 aaKnown RBP13.53□□□□□ -0.24
CDH3-207ENST00000568292 COL15A1P39059 1388 aa13.53□□□□□ -0.24
CDH3-207ENST00000568292 VIRMAQ69YN4 1812 aaKnown RBP13.53□□□□□ -0.24
CDH3-207ENST00000568292 NEUROD2Q15784 382 aa13.52□□□□□ -0.25
CDH3-207ENST00000568292 CCDC146Q8IYE0 955 aa13.52□□□□□ -0.25
CDH3-207ENST00000568292 THUMPD2Q9BTF0 503 aaKnown RBP13.52□□□□□ -0.25
CDH3-207ENST00000568292 ZNF330Q9Y3S2 320 aaPredicted RBP13.52□□□□□ -0.25
CDH3-207ENST00000568292 PRAMEF22A3QJZ6 481 aa13.51□□□□□ -0.25
CDH3-207ENST00000568292 YBX3P16989 372 aaKnown RBP eCLIP13.51□□□□□ -0.25
CDH3-207ENST00000568292 BCL2L12Q9HB09 334 aa13.51□□□□□ -0.25
CDH3-207ENST00000568292 BABAM1Q9NWV8 329 aa13.51□□□□□ -0.25
CDH3-207ENST00000568292 TBC1D2BQ9UPU7 963 aa13.51□□□□□ -0.25
CDH3-207ENST00000568292 SIPA1L3O60292 1781 aaPredicted RBP13.5□□□□□ -0.25
CDH3-207ENST00000568292 A0A0G2JLW4 131 aa13.5□□□□□ -0.25
CDH3-207ENST00000568292 POLRMTO00411 1230 aaKnown RBP13.5□□□□□ -0.25
CDH3-207ENST00000568292 SERPINB2P05120 415 aa13.5□□□□□ -0.25
CDH3-207ENST00000568292 EIF4A1P60842 406 aaKnown RBP13.5□□□□□ -0.25
CDH3-207ENST00000568292 DDR1Q08345 913 aa13.5□□□□□ -0.25
CDH3-207ENST00000568292 NFIXQ14938 502 aa13.5□□□□□ -0.25
CDH3-207ENST00000568292 RRP7AQ9Y3A4 280 aaKnown RBP13.5□□□□□ -0.25
CDH3-207ENST00000568292 UBR2Q8IWV8 1755 aa13.5□□□□□ -0.25
CDH3-207ENST00000568292 GIGYF1O75420 1035 aaPredicted RBP13.49□□□□□ -0.25
CDH3-207ENST00000568292 BICDL1Q6ZP65 573 aa13.49□□□□□ -0.25
CDH3-207ENST00000568292 DZIP3Q86Y13 1208 aaKnown RBP13.49□□□□□ -0.25
CDH3-207ENST00000568292 TSPYL4Q9UJ04 414 aa13.49□□□□□ -0.25
CDH3-207ENST00000568292 ANP32CO43423 234 aa13.48□□□□□ -0.25
CDH3-207ENST00000568292 DPEP1P16444 411 aa13.48□□□□□ -0.25
CDH3-207ENST00000568292 CAMTA2O94983 1202 aa13.47□□□□□ -0.25
CDH3-207ENST00000568292 PIP4K2AP48426 406 aaPredicted RBP13.47□□□□□ -0.25
CDH3-207ENST00000568292 TBC1D9BQ66K14 1250 aa13.47□□□□□ -0.25
CDH3-207ENST00000568292 SETDB2Q96T68 719 aa13.47□□□□□ -0.25
CDH3-207ENST00000568292 PIM2Q9P1W9 311 aa13.47□□□□□ -0.25
CDH3-207ENST00000568292 WWC3Q9ULE0 1092 aa13.47□□□□□ -0.25
CDH3-207ENST00000568292 TRIM35Q9UPQ4 493 aa13.47□□□□□ -0.25
CDH3-207ENST00000568292 SRCAPQ6ZRS2 3230 aa13.47□□□□□ -0.25
CDH3-207ENST00000568292 NBPF26B4DH59 902 aa13.46□□□□□ -0.25
CDH3-207ENST00000568292 KCNA3P22001 575 aa13.46□□□□□ -0.25
CDH3-207ENST00000568292 NBPF10Q6P3W6 841 aaKnown RBP13.46□□□□□ -0.25
CDH3-207ENST00000568292 CLEC4GQ6UXB4 293 aa13.46□□□□□ -0.25
CDH3-207ENST00000568292 NBPF15Q8N660 670 aa13.46□□□□□ -0.25
CDH3-207ENST00000568292 BCS1LQ9Y276 419 aa13.46□□□□□ -0.25
CDH3-207ENST00000568292 LAS1LQ9Y4W2 734 aaKnown RBP13.46□□□□□ -0.25
CDH3-207ENST00000568292 C10orf71Q711Q0 1435 aa13.46□□□□□ -0.26
CDH3-207ENST00000568292 C4AP0C0L4 1744 aa13.45□□□□□ -0.26
CDH3-207ENST00000568292 ZNF652Q9Y2D9 606 aa13.45□□□□□ -0.26
CDH3-207ENST00000568292 PXDNLA1KZ92 1463 aa13.44□□□□□ -0.26
CDH3-207ENST00000568292 CHL1O00533 1208 aa13.44□□□□□ -0.26
CDH3-207ENST00000568292 APAF1O14727 1248 aa13.44□□□□□ -0.26
CDH3-207ENST00000568292 RGL2O15211 777 aa13.44□□□□□ -0.26
CDH3-207ENST00000568292 NGEFQ8N5V2 710 aa13.44□□□□□ -0.26
CDH3-207ENST00000568292 DLG5Q8TDM6 1919 aa13.44□□□□□ -0.26
CDH3-207ENST00000568292 NPHP1O15259 732 aa13.43□□□□□ -0.26
CDH3-207ENST00000568292 EIF2S2P20042 333 aaKnown RBP13.43□□□□□ -0.26
CDH3-207ENST00000568292 CHRNA5P30532 468 aa13.43□□□□□ -0.26
CDH3-207ENST00000568292 CCDC184Q52MB2 194 aa13.43□□□□□ -0.26
CDH3-207ENST00000568292 DALRD3Q5D0E6 543 aaKnown RBP13.43□□□□□ -0.26
CDH3-207ENST00000568292 ARHGAP27Q6ZUM4 889 aa13.43□□□□□ -0.26
CDH3-207ENST00000568292 ZNF784Q8NCA9 323 aaPredicted RBP13.43□□□□□ -0.26
CDH3-207ENST00000568292 PDZRN3Q9UPQ7 1066 aa13.43□□□□□ -0.26
CDH3-207ENST00000568292 ERVV-1B6SEH8 477 aa13.42□□□□□ -0.26
CDH3-207ENST00000568292 H0YIN7 160 aa13.42□□□□□ -0.26
CDH3-207ENST00000568292 MYL6BP14649 208 aa13.42□□□□□ -0.26
CDH3-207ENST00000568292 PDE6BP35913 854 aa13.42□□□□□ -0.26
CDH3-207ENST00000568292 CALD1Q05682 793 aaKnown RBP13.42□□□□□ -0.26
CDH3-207ENST00000568292 BRIP1Q9BX63 1249 aa13.42□□□□□ -0.26
CDH3-207ENST00000568292 ERBB4Q15303 1308 aa13.41□□□□□ -0.26
CDH3-207ENST00000568292 TPTE2Q6XPS3 522 aa13.41□□□□□ -0.26
CDH3-207ENST00000568292 C2CD5Q86YS7 1000 aa13.41□□□□□ -0.26
CDH3-207ENST00000568292 CFAP44Q96MT7 982 aa13.41□□□□□ -0.26
CDH3-207ENST00000568292 MRS2Q9HD23 443 aa13.41□□□□□ -0.26
CDH3-207ENST00000568292 CARMIL3Q8ND23 1372 aa13.41□□□□□ -0.26
CDH3-207ENST00000568292 ST5P78524 1137 aa13.4□□□□□ -0.26
CDH3-207ENST00000568292 HLFQ16534 295 aa13.4□□□□□ -0.26
CDH3-207ENST00000568292 PRR5LQ6MZQ0 368 aa13.4□□□□□ -0.26
CDH3-207ENST00000568292 KIF6Q6ZMV9 814 aa13.4□□□□□ -0.26
CDH3-207ENST00000568292 NIP7Q9Y221 180 aaKnown RBP eCLIP13.4□□□□□ -0.26
CDH3-207ENST00000568292 KIF13BQ9NQT8 1826 aa13.4□□□□□ -0.26
CDH3-207ENST00000568292 GNAI1P63096 354 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms