RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 ZNF316A6NFI3 1004 aaPredicted RBP12.66□□□□□ -0.38
SF3B3-211ENST00000568291 KCNQ3O43525 872 aa12.66□□□□□ -0.38
SF3B3-211ENST00000568291 RPS6KA4O75676 772 aa12.66□□□□□ -0.38
SF3B3-211ENST00000568291 RFC4P35249 363 aa12.66□□□□□ -0.38
SF3B3-211ENST00000568291 GAS2L2Q8NHY3 880 aa12.66□□□□□ -0.38
SF3B3-211ENST00000568291 BCS1LQ9Y276 419 aa12.66□□□□□ -0.38
SF3B3-211ENST00000568291 AFDNP55196 1824 aaKnown RBP12.66□□□□□ -0.38
SF3B3-211ENST00000568291 UBR2Q8IWV8 1755 aa12.66□□□□□ -0.38
SF3B3-211ENST00000568291 DLEC1Q9Y238 1755 aa12.66□□□□□ -0.38
SF3B3-211ENST00000568291 A0A0G2JLW4 131 aa12.65□□□□□ -0.38
SF3B3-211ENST00000568291 HSPA6P17066 643 aa12.65□□□□□ -0.38
SF3B3-211ENST00000568291 CRKLP46109 303 aaKnown RBP12.65□□□□□ -0.38
SF3B3-211ENST00000568291 TGFB2P61812 414 aa12.65□□□□□ -0.38
SF3B3-211ENST00000568291 DNAJC10Q8IXB1 793 aa12.65□□□□□ -0.38
SF3B3-211ENST00000568291 PARP3Q9Y6F1 533 aa12.65□□□□□ -0.38
SF3B3-211ENST00000568291 SBF1O95248 1867 aa12.64□□□□□ -0.39
SF3B3-211ENST00000568291 CCDC146Q8IYE0 955 aa12.64□□□□□ -0.39
SF3B3-211ENST00000568291 THUMPD2Q9BTF0 503 aaKnown RBP12.64□□□□□ -0.39
SF3B3-211ENST00000568291 MIS18AQ9NYP9 233 aa12.64□□□□□ -0.39
SF3B3-211ENST00000568291 USP42Q9H9J4 1324 aaKnown RBP12.63□□□□□ -0.39
SF3B3-211ENST00000568291 KCPQ6ZWJ8 1503 aa12.63□□□□□ -0.39
SF3B3-211ENST00000568291 KIF3CO14782 793 aa12.63□□□□□ -0.39
SF3B3-211ENST00000568291 DPEP1P16444 411 aa12.63□□□□□ -0.39
SF3B3-211ENST00000568291 TEFQ10587 303 aa12.63□□□□□ -0.39
SF3B3-211ENST00000568291 PLEKHF1Q96S99 279 aa12.63□□□□□ -0.39
SF3B3-211ENST00000568291 PRKRIP1Q9H875 184 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-211ENST00000568291 SRP68Q9UHB9 627 aaKnown RBP12.63□□□□□ -0.39
SF3B3-211ENST00000568291 MYBBP1AQ9BQG0 1328 aaKnown RBP12.62□□□□□ -0.39
SF3B3-211ENST00000568291 NRXN2Q9P2S2 1712 aa12.62□□□□□ -0.39
SF3B3-211ENST00000568291 TNRC6CQ9HCJ0 1690 aaKnown RBP12.62□□□□□ -0.39
SF3B3-211ENST00000568291 CCDC184Q52MB2 194 aa12.62□□□□□ -0.39
SF3B3-211ENST00000568291 RRP7AQ9Y3A4 280 aaKnown RBP12.62□□□□□ -0.39
SF3B3-211ENST00000568291 WDR90Q96KV7 1748 aa12.62□□□□□ -0.39
SF3B3-211ENST00000568291 CEP350Q5VT06 3117 aa12.61□□□□□ -0.39
SF3B3-211ENST00000568291 BTBD11A6QL63 1104 aa12.61□□□□□ -0.39
SF3B3-211ENST00000568291 C1QBPQ07021 282 aaKnown RBP12.61□□□□□ -0.39
SF3B3-211ENST00000568291 DDR1Q08345 913 aa12.61□□□□□ -0.39
SF3B3-211ENST00000568291 INTS5Q6P9B9 1019 aaKnown RBP12.61□□□□□ -0.39
SF3B3-211ENST00000568291 ARHGAP27Q6ZUM4 889 aa12.61□□□□□ -0.39
SF3B3-211ENST00000568291 RTF1Q92541 710 aaKnown RBP12.61□□□□□ -0.39
SF3B3-211ENST00000568291 ZNF496Q96IT1 587 aaPredicted RBP12.61□□□□□ -0.39
SF3B3-211ENST00000568291 SIPA1L3O60292 1781 aaPredicted RBP12.61□□□□□ -0.39
SF3B3-211ENST00000568291 SCN7AQ01118 1682 aa12.61□□□□□ -0.39
SF3B3-211ENST00000568291 TIAM2Q8IVF5 1701 aa12.6□□□□□ -0.39
SF3B3-211ENST00000568291 PRAMEF22A3QJZ6 481 aa12.6□□□□□ -0.39
SF3B3-211ENST00000568291 FKBP8Q14318 412 aa12.6□□□□□ -0.39
SF3B3-211ENST00000568291 NEUROD2Q15784 382 aa12.6□□□□□ -0.39
SF3B3-211ENST00000568291 TTC5Q8N0Z6 440 aa12.6□□□□□ -0.39
SF3B3-211ENST00000568291 ADAMTS8Q9UP79 889 aa12.6□□□□□ -0.39
SF3B3-211ENST00000568291 CCDC88AQ3V6T2 1871 aa12.59□□□□□ -0.39
SF3B3-211ENST00000568291 COL15A1P39059 1388 aa12.59□□□□□ -0.39
SF3B3-211ENST00000568291 CYP19A1P11511 503 aaPredicted RBP12.59□□□□□ -0.39
SF3B3-211ENST00000568291 CANXP27824 592 aaKnown RBP12.59□□□□□ -0.39
SF3B3-211ENST00000568291 ZNF790Q6PG37 636 aa12.59□□□□□ -0.39
SF3B3-211ENST00000568291 SOS1Q07889 1333 aaPredicted RBP12.59□□□□□ -0.39
SF3B3-211ENST00000568291 NEFMP07197 916 aa12.58□□□□□ -0.4
SF3B3-211ENST00000568291 PIP4K2AP48426 406 aaPredicted RBP12.58□□□□□ -0.4
SF3B3-211ENST00000568291 NFE2L2Q16236 605 aa12.58□□□□□ -0.4
SF3B3-211ENST00000568291 PIM2Q9P1W9 311 aa12.58□□□□□ -0.4
SF3B3-211ENST00000568291 ZBTB1Q9Y2K1 713 aa12.58□□□□□ -0.4
SF3B3-211ENST00000568291 MAPK8IP3Q9UPT6 1336 aa12.58□□□□□ -0.4
SF3B3-211ENST00000568291 CEMIPQ8WUJ3 1361 aa12.57□□□□□ -0.4
SF3B3-211ENST00000568291 CACNA1SQ13698 1873 aa12.57□□□□□ -0.4
SF3B3-211ENST00000568291 ANKRD31Q8N7Z5 1873 aa12.57□□□□□ -0.4
SF3B3-211ENST00000568291 POLRMTO00411 1230 aaKnown RBP12.57□□□□□ -0.4
SF3B3-211ENST00000568291 KCNA3P22001 575 aa12.57□□□□□ -0.4
SF3B3-211ENST00000568291 RIPK4P57078 832 aa12.57□□□□□ -0.4
SF3B3-211ENST00000568291 WDR43Q15061 677 aaKnown RBP eCLIP12.57□□□□□ -0.4
SF3B3-211ENST00000568291 DALRD3Q5D0E6 543 aaKnown RBP12.57□□□□□ -0.4
SF3B3-211ENST00000568291 C9orf131Q5VYM1 1079 aa12.57□□□□□ -0.4
SF3B3-211ENST00000568291 NMRK2Q9NPI5 230 aa12.57□□□□□ -0.4
SF3B3-211ENST00000568291 ZNF330Q9Y3S2 320 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-211ENST00000568291 COL11A2P13942 1736 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-211ENST00000568291 ZPR1O75312 459 aa12.56□□□□□ -0.4
SF3B3-211ENST00000568291 A1BGP04217 495 aa12.56□□□□□ -0.4
SF3B3-211ENST00000568291 CHRNA5P30532 468 aa12.56□□□□□ -0.4
SF3B3-211ENST00000568291 IFFO2Q5TF58 517 aa12.56□□□□□ -0.4
SF3B3-211ENST00000568291 USPL1Q5W0Q7 1092 aa12.56□□□□□ -0.4
SF3B3-211ENST00000568291 USP16Q9Y5T5 823 aa12.56□□□□□ -0.4
SF3B3-211ENST00000568291 BCORQ6W2J9 1755 aa12.56□□□□□ -0.4
SF3B3-211ENST00000568291 TOMM70O94826 608 aa12.55□□□□□ -0.4
SF3B3-211ENST00000568291 APLP1P51693 650 aa12.55□□□□□ -0.4
SF3B3-211ENST00000568291 TAF7Q15545 349 aaPredicted RBP12.55□□□□□ -0.4
SF3B3-211ENST00000568291 FMNL2Q96PY5 1086 aa12.55□□□□□ -0.4
SF3B3-211ENST00000568291 RNF181Q9P0P0 153 aa12.55□□□□□ -0.4
SF3B3-211ENST00000568291 HTATSF1O43719 755 aaKnown RBP12.54□□□□□ -0.4
SF3B3-211ENST00000568291 TM4SF1P30408 202 aa12.54□□□□□ -0.4
SF3B3-211ENST00000568291 TMPOP42166 694 aaKnown RBP12.54□□□□□ -0.4
SF3B3-211ENST00000568291 HEG1Q9ULI3 1381 aa12.54□□□□□ -0.4
SF3B3-211ENST00000568291 DICER1Q9UPY3 1922 aaKnown RBP12.53□□□□□ -0.4
SF3B3-211ENST00000568291 NFIXQ14938 502 aa12.53□□□□□ -0.4
SF3B3-211ENST00000568291 VSIG10Q8N0Z9 540 aa12.53□□□□□ -0.4
SF3B3-211ENST00000568291 PNNQ9H307 717 aaKnown RBP12.53□□□□□ -0.4
SF3B3-211ENST00000568291 NARFQ9UHQ1 456 aa12.53□□□□□ -0.4
SF3B3-211ENST00000568291 CARMIL3Q8ND23 1372 aa12.53□□□□□ -0.4
SF3B3-211ENST00000568291 ARFGEF2Q9Y6D5 1785 aa12.52□□□□□ -0.41
SF3B3-211ENST00000568291 STARD3NLO95772 234 aa12.52□□□□□ -0.41
SF3B3-211ENST00000568291 RASSF7Q02833 373 aa12.52□□□□□ -0.41
SF3B3-211ENST00000568291 C16orf71Q8IYS4 520 aaPredicted RBP12.52□□□□□ -0.41
SF3B3-211ENST00000568291 RBM46Q8TBY0 533 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms