RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-209ENST00000567635 YBX3P16989 372 aaKnown RBP eCLIP9.19□□□□□ -0.942e-13■■■□□ 17.9
SF3B3-209ENST00000567635 ZNF496Q96IT1 587 aaPredicted RBP9.19□□□□□ -0.94
SF3B3-209ENST00000567635 SRP68Q9UHB9 627 aaKnown RBP9.19□□□□□ -0.94
SF3B3-209ENST00000567635 PARP3Q9Y6F1 533 aa9.19□□□□□ -0.94
SF3B3-209ENST00000567635 KCPQ6ZWJ8 1503 aa9.19□□□□□ -0.94
SF3B3-209ENST00000567635 CANXP27824 592 aaKnown RBP9.18□□□□□ -0.94
SF3B3-209ENST00000567635 SOS1Q07889 1333 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-209ENST00000567635 MCM10Q7L590 875 aa9.18□□□□□ -0.94
SF3B3-209ENST00000567635 N4BP2Q86UW6 1770 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-209ENST00000567635 FMNL2Q96PY5 1086 aa9.18□□□□□ -0.94
SF3B3-209ENST00000567635 USP42Q9H9J4 1324 aaKnown RBP9.18□□□□□ -0.94
SF3B3-209ENST00000567635 HEG1Q9ULI3 1381 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 A0A087WZG4 1122 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 KCNQ3O43525 872 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 TM4SF1P30408 202 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 TGFB2P61812 414 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 DCTN1Q14203 1278 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 FKBP8Q14318 412 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 TAF7Q15545 349 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-209ENST00000567635 USPL1Q5W0Q7 1092 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 PLEKHF1Q96S99 279 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 NARFQ9UHQ1 456 aa9.17□□□□□ -0.94
SF3B3-209ENST00000567635 A0A0G2JLW4 131 aa9.16□□□□□ -0.94
SF3B3-209ENST00000567635 ZEB1P37275 1124 aaPredicted RBP9.16□□□□□ -0.94
SF3B3-209ENST00000567635 EIF5P55010 431 aaKnown RBP9.16□□□□□ -0.94
SF3B3-209ENST00000567635 ZNF784Q8NCA9 323 aaPredicted RBP9.16□□□□□ -0.94
SF3B3-209ENST00000567635 ZBTB1Q9Y2K1 713 aa9.16□□□□□ -0.94
SF3B3-209ENST00000567635 AFDNP55196 1824 aaKnown RBP9.16□□□□□ -0.94
SF3B3-209ENST00000567635 COL15A1P39059 1388 aa9.15□□□□□ -0.94
SF3B3-209ENST00000567635 MYBBP1AQ9BQG0 1328 aaKnown RBP9.15□□□□□ -0.94
SF3B3-209ENST00000567635 A1BGP04217 495 aa9.15□□□□□ -0.94
SF3B3-209ENST00000567635 SNRPA1P09661 255 aaKnown RBP9.15□□□□□ -0.94
SF3B3-209ENST00000567635 NFE2L2Q16236 605 aa9.15□□□□□ -0.94
SF3B3-209ENST00000567635 NPM2Q86SE8 214 aaKnown RBP9.15□□□□□ -0.94
SF3B3-209ENST00000567635 USP16Q9Y5T5 823 aa9.15□□□□□ -0.94
SF3B3-209ENST00000567635 MAPK8IP3Q9UPT6 1336 aa9.14□□□□□ -0.95
SF3B3-209ENST00000567635 POLRMTO00411 1230 aaKnown RBP9.14□□□□□ -0.95
SF3B3-209ENST00000567635 DPEP1P16444 411 aa9.14□□□□□ -0.95
SF3B3-209ENST00000567635 IL6STP40189 918 aaPredicted RBP9.14□□□□□ -0.95
SF3B3-209ENST00000567635 DDR1Q08345 913 aa9.14□□□□□ -0.95
SF3B3-209ENST00000567635 PNISRQ8TF01 805 aaKnown RBP9.14□□□□□ -0.95
SF3B3-209ENST00000567635 MIS18AQ9NYP9 233 aa9.14□□□□□ -0.95
SF3B3-209ENST00000567635 WWC3Q9ULE0 1092 aa9.14□□□□□ -0.95
SF3B3-209ENST00000567635 BRCA1P38398 1863 aaKnown RBP9.14□□□□□ -0.95
SF3B3-209ENST00000567635 NFIXQ14938 502 aa9.13□□□□□ -0.95
SF3B3-209ENST00000567635 BCL2L12Q9HB09 334 aa9.13□□□□□ -0.95
SF3B3-209ENST00000567635 TBC1D2BQ9UPU7 963 aa9.13□□□□□ -0.95
SF3B3-209ENST00000567635 ZNF330Q9Y3S2 320 aaPredicted RBP9.13□□□□□ -0.95
SF3B3-209ENST00000567635 KIAA1551Q9HCM1 1747 aa9.13□□□□□ -0.95
SF3B3-209ENST00000567635 C10orf71Q711Q0 1435 aa9.13□□□□□ -0.95
SF3B3-209ENST00000567635 ARFGEF1Q9Y6D6 1849 aa9.12□□□□□ -0.95
SF3B3-209ENST00000567635 PRAMEF22A3QJZ6 481 aa9.12□□□□□ -0.95
SF3B3-209ENST00000567635 SERPINB2P05120 415 aa9.12□□□□□ -0.95
SF3B3-209ENST00000567635 KCNA3P22001 575 aa9.12□□□□□ -0.95
SF3B3-209ENST00000567635 RIPK4P57078 832 aa9.12□□□□□ -0.95
SF3B3-209ENST00000567635 PIM2Q9P1W9 311 aa9.12□□□□□ -0.95
SF3B3-209ENST00000567635 BCS1LQ9Y276 419 aa9.12□□□□□ -0.95
SF3B3-209ENST00000567635 PXDNLA1KZ92 1463 aa9.12□□□□□ -0.95
SF3B3-209ENST00000567635 TMPOP42166 694 aaKnown RBP9.11□□□□□ -0.95
SF3B3-209ENST00000567635 WDR43Q15061 677 aaKnown RBP eCLIP9.11□□□□□ -0.957e-6■■□□□ 14.2
SF3B3-209ENST00000567635 TBC1D9BQ66K14 1250 aa9.11□□□□□ -0.95
SF3B3-209ENST00000567635 BICDL1Q6ZP65 573 aa9.11□□□□□ -0.95
SF3B3-209ENST00000567635 ARHGAP27Q6ZUM4 889 aa9.11□□□□□ -0.95
SF3B3-209ENST00000567635 THUMPD2Q9BTF0 503 aaKnown RBP9.11□□□□□ -0.95
SF3B3-209ENST00000567635 PRKRIP1Q9H875 184 aaPredicted RBP9.11□□□□□ -0.95
SF3B3-209ENST00000567635 NRXN2Q9P2S2 1712 aa9.11□□□□□ -0.95
SF3B3-209ENST00000567635 SBF1O95248 1867 aa9.11□□□□□ -0.95
SF3B3-209ENST00000567635 CCDC88AQ3V6T2 1871 aa9.11□□□□□ -0.95
SF3B3-209ENST00000567635 KDM3BQ7LBC6 1761 aa9.1□□□□□ -0.95
SF3B3-209ENST00000567635 CAMTA2O94983 1202 aa9.1□□□□□ -0.95
SF3B3-209ENST00000567635 CHRNA5P30532 468 aa9.1□□□□□ -0.95
SF3B3-209ENST00000567635 PIP4K2AP48426 406 aaPredicted RBP9.1□□□□□ -0.95
SF3B3-209ENST00000567635 EIF4A1P60842 406 aaKnown RBP9.1□□□□□ -0.95
SF3B3-209ENST00000567635 DALRD3Q5D0E6 543 aaKnown RBP9.1□□□□□ -0.95
SF3B3-209ENST00000567635 CLEC4GQ6UXB4 293 aa9.1□□□□□ -0.95
SF3B3-209ENST00000567635 DZIP3Q86Y13 1208 aaKnown RBP9.1□□□□□ -0.95
SF3B3-209ENST00000567635 RUNDC1Q96C34 613 aa9.1□□□□□ -0.95
SF3B3-209ENST00000567635 SETDB2Q96T68 719 aa9.1□□□□□ -0.95
SF3B3-209ENST00000567635 RNF39Q9H2S5 420 aa9.1□□□□□ -0.95
SF3B3-209ENST00000567635 NBPF26B4DH59 902 aa9.09□□□□□ -0.95
SF3B3-209ENST00000567635 GIGYF1O75420 1035 aaPredicted RBP9.09□□□□□ -0.95
SF3B3-209ENST00000567635 LMOD3Q0VAK6 560 aa9.09□□□□□ -0.95
SF3B3-209ENST00000567635 NBPF10Q6P3W6 841 aaKnown RBP9.09□□□□□ -0.95
SF3B3-209ENST00000567635 CCDC146Q8IYE0 955 aa9.09□□□□□ -0.95
SF3B3-209ENST00000567635 NBPF15Q8N660 670 aa9.09□□□□□ -0.95
SF3B3-209ENST00000567635 BABAM1Q9NWV8 329 aa9.09□□□□□ -0.95
SF3B3-209ENST00000567635 ADAMTS8Q9UP79 889 aa9.09□□□□□ -0.95
SF3B3-209ENST00000567635 NUP98P52948 1817 aa9.09□□□□□ -0.95
SF3B3-209ENST00000567635 UTRNP46939 3433 aa9.09□□□□□ -0.95
SF3B3-209ENST00000567635 GOLGB1Q14789 3259 aaKnown RBP9.09□□□□□ -0.95
SF3B3-209ENST00000567635 H0YIN7 160 aa9.08□□□□□ -0.96
SF3B3-209ENST00000567635 NEUROD2Q15784 382 aa9.08□□□□□ -0.96
SF3B3-209ENST00000567635 TSPYL4Q9UJ04 414 aa9.08□□□□□ -0.96
SF3B3-209ENST00000567635 ZNF652Q9Y2D9 606 aa9.08□□□□□ -0.96
SF3B3-209ENST00000567635 RRP7AQ9Y3A4 280 aaKnown RBP9.08□□□□□ -0.96
SF3B3-209ENST00000567635 ANKRD31Q8N7Z5 1873 aa9.08□□□□□ -0.96
SF3B3-209ENST00000567635 SCN7AQ01118 1682 aa9.07□□□□□ -0.96
SF3B3-209ENST00000567635 LAMB4A4D0S4 1761 aa9.07□□□□□ -0.96
SF3B3-209ENST00000567635 BCORQ6W2J9 1755 aa9.07□□□□□ -0.96
SF3B3-209ENST00000567635 DLEC1Q9Y238 1755 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms