RNA–Protein interactions for RNA: ENST00000567379.5

VPS9D1-206, Transcript of VPS9 domain containing 1, humanhuman

TSL 5

Gene VPS9D1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-206ENST00000567379 SPATA31A1Q5TZJ5 1347 aa13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 SLIT2O94813 1529 aa13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 C5P01031 1676 aa13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 RGS3P49796 1198 aa13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 C1orf115Q9H7X2 142 aa13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 DDX21Q9NR30 783 aaKnown RBP eCLIP13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 TMOD3Q9NYL9 352 aa13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 USP21Q9UK80 565 aa13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 PDZRN3Q9UPQ7 1066 aa13.64□□□□□ -0.23
VPS9D1-206ENST00000567379 PRAMEF22A3QJZ6 481 aa13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 DDX58O95786 925 aaKnown RBP13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 GNAI3P08754 354 aa13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 YY1P25490 414 aa13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 RPAP2Q8IXW5 612 aaPredicted RBP13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 SMC5Q8IY18 1101 aa13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 CCDC9Q9Y3X0 531 aaKnown RBP13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 ATRNO75882 1429 aa13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 SPATA31A5Q5VU36 1347 aa13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 SPATA31A7Q8IWB4 1347 aa13.63□□□□□ -0.23
VPS9D1-206ENST00000567379 PAPPAQ13219 1627 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 ANXA1P04083 346 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 SKAP1Q86WV1 359 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 UNC5CLQ8IV45 518 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 DNAAF4Q8WXU2 420 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 GCC1Q96CN9 775 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 MEIS3Q99687 375 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 SRCIN1Q9C0H9 1055 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 RBM19Q9Y4C8 960 aaKnown RBP13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 LAMB4A4D0S4 1761 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 TNS2Q63HR2 1409 aa13.62□□□□□ -0.23
VPS9D1-206ENST00000567379 TOGARAM1Q9Y4F4 1720 aa13.61□□□□□ -0.23
VPS9D1-206ENST00000567379 UBR2Q8IWV8 1755 aa13.61□□□□□ -0.23
VPS9D1-206ENST00000567379 KSR2Q6VAB6 950 aa13.61□□□□□ -0.23
VPS9D1-206ENST00000567379 BARGINQ6ZT62 677 aa13.61□□□□□ -0.23
VPS9D1-206ENST00000567379 ANKRD44Q8N8A2 993 aa13.61□□□□□ -0.23
VPS9D1-206ENST00000567379 ERBB4Q15303 1308 aa13.61□□□□□ -0.23
VPS9D1-206ENST00000567379 PI4KAP2A4QPH2 592 aa13.6□□□□□ -0.23
VPS9D1-206ENST00000567379 HMMRO75330 724 aa13.6□□□□□ -0.23
VPS9D1-206ENST00000567379 GNAI2P04899 355 aa13.6□□□□□ -0.23
VPS9D1-206ENST00000567379 DDB1Q16531 1140 aa13.6□□□□□ -0.23
VPS9D1-206ENST00000567379 PROSER3Q2NL68 480 aa13.6□□□□□ -0.23
VPS9D1-206ENST00000567379 PI4KAP1Q8N8J0 262 aa13.6□□□□□ -0.23
VPS9D1-206ENST00000567379 ATP10DQ9P241 1426 aa13.59□□□□□ -0.23
VPS9D1-206ENST00000567379 PDE4AP27815 886 aa13.59□□□□□ -0.23
VPS9D1-206ENST00000567379 SF3B2Q13435 895 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-206ENST00000567379 PDIA6Q15084 440 aa13.59□□□□□ -0.23
VPS9D1-206ENST00000567379 USP16Q9Y5T5 823 aa13.59□□□□□ -0.23
VPS9D1-206ENST00000567379 ITGB4P16144 1822 aa13.59□□□□□ -0.23
VPS9D1-206ENST00000567379 KCPQ6ZWJ8 1503 aa13.59□□□□□ -0.23
VPS9D1-206ENST00000567379 ADCY9O60503 1353 aa13.58□□□□□ -0.23
VPS9D1-206ENST00000567379 ALDH1L1O75891 902 aa13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 NUCB1Q02818 461 aa13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 VPS72Q15906 364 aa13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 BEND3Q5T5X7 828 aa13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 CEP85Q6P2H3 762 aa13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 SIRT2Q8IXJ6 389 aa13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 FNBP4Q8N3X1 1017 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 TEX13AQ9BXU3 409 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 MAP3K2Q9Y2U5 619 aa13.58□□□□□ -0.24
VPS9D1-206ENST00000567379 BCL9LQ86UU0 1499 aa13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 UBTFL1P0CB47 393 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 MYL6BP14649 208 aa13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 AIMP1Q12904 312 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 RIC3Q7Z5B4 369 aa13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 DEFB132Q7Z7B7 95 aa13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 PIGBQ92521 554 aa13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 ZBTB47Q9UFB7 747 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 HDAC5Q9UQL6 1122 aa13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 GLI3P10071 1580 aa13.57□□□□□ -0.24
VPS9D1-206ENST00000567379 PTCD1O75127 700 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 FAM161AQ3B820 660 aa13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 CHD1LQ86WJ1 897 aa13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 VSIG10Q8N0Z9 540 aa13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 XAGE3Q8WTP9 111 aa13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 BACH2Q9BYV9 841 aa13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 USP44Q9H0E7 712 aa13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 DCTPP1Q9H773 170 aa13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 BCL9O00512 1426 aa13.56□□□□□ -0.24
VPS9D1-206ENST00000567379 NEXNQ0ZGT2 675 aa13.55□□□□□ -0.24
VPS9D1-206ENST00000567379 ANKRD45Q5TZF3 282 aa13.55□□□□□ -0.24
VPS9D1-206ENST00000567379 COPS6Q7L5N1 327 aa13.55□□□□□ -0.24
VPS9D1-206ENST00000567379 ATG3Q9NT62 314 aa13.55□□□□□ -0.24
VPS9D1-206ENST00000567379 KAT6BQ8WYB5 2073 aa13.55□□□□□ -0.24
VPS9D1-206ENST00000567379 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.55□□□□□ -0.24
VPS9D1-206ENST00000567379 DOT1LQ8TEK3 1739 aa13.54□□□□□ -0.24
VPS9D1-206ENST00000567379 PSDA5PKW4 1024 aaPredicted RBP13.54□□□□□ -0.24
VPS9D1-206ENST00000567379 ATP8B2P98198 1209 aa13.54□□□□□ -0.24
VPS9D1-206ENST00000567379 ANKRD13DQ6ZTN6 518 aa13.54□□□□□ -0.24
VPS9D1-206ENST00000567379 LINS1Q8NG48 757 aa13.54□□□□□ -0.24
VPS9D1-206ENST00000567379 SYTL4Q96C24 671 aaPredicted RBP13.54□□□□□ -0.24
VPS9D1-206ENST00000567379 ASAP1Q9ULH1 1129 aa13.54□□□□□ -0.24
VPS9D1-206ENST00000567379 LRRFIP2Q9Y608 721 aaKnown RBP13.54□□□□□ -0.24
VPS9D1-206ENST00000567379 STARD3NLO95772 234 aa13.53□□□□□ -0.24
VPS9D1-206ENST00000567379 PRIM1P49642 420 aaKnown RBP13.53□□□□□ -0.24
VPS9D1-206ENST00000567379 LRP10Q7Z4F1 713 aa13.53□□□□□ -0.24
VPS9D1-206ENST00000567379 RBM42Q9BTD8 480 aaKnown RBP13.53□□□□□ -0.24
VPS9D1-206ENST00000567379 METTL22Q9BUU2 404 aaPredicted RBP13.53□□□□□ -0.24
VPS9D1-206ENST00000567379 LNPKQ9C0E8 428 aa13.53□□□□□ -0.24
VPS9D1-206ENST00000567379 C9orf78Q9NZ63 289 aaPredicted RBP13.53□□□□□ -0.24
VPS9D1-206ENST00000567379 IBTKQ9P2D0 1353 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms