RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 N4BP2Q86UW6 1770 aaPredicted RBP13.51□□□□□ -0.25
GTF3C1-206ENST00000566779 VSIG10Q8N0Z9 540 aa13.51□□□□□ -0.25
GTF3C1-206ENST00000566779 GAS2L2Q8NHY3 880 aa13.51□□□□□ -0.25
GTF3C1-206ENST00000566779 CIZ1Q9ULV3 898 aaPredicted RBP13.51□□□□□ -0.25
GTF3C1-206ENST00000566779 KCPQ6ZWJ8 1503 aa13.5□□□□□ -0.25
GTF3C1-206ENST00000566779 TEFQ10587 303 aa13.5□□□□□ -0.25
GTF3C1-206ENST00000566779 DDX10Q13206 875 aaKnown RBP13.5□□□□□ -0.25
GTF3C1-206ENST00000566779 CNTNAP4Q9C0A0 1308 aa13.49□□□□□ -0.25
GTF3C1-206ENST00000566779 GNAT3A8MTJ3 354 aa13.49□□□□□ -0.25
GTF3C1-206ENST00000566779 CRKLP46109 303 aaKnown RBP13.49□□□□□ -0.25
GTF3C1-206ENST00000566779 TRAPPC3LQ5T215 181 aa13.49□□□□□ -0.25
GTF3C1-206ENST00000566779 DNAJC10Q8IXB1 793 aa13.49□□□□□ -0.25
GTF3C1-206ENST00000566779 TTC5Q8N0Z6 440 aa13.49□□□□□ -0.25
GTF3C1-206ENST00000566779 PHACTR3Q96KR7 559 aa13.49□□□□□ -0.25
GTF3C1-206ENST00000566779 RSPH6AQ9H0K4 717 aa13.49□□□□□ -0.25
GTF3C1-206ENST00000566779 RFC4P35249 363 aa13.48□□□□□ -0.25
GTF3C1-206ENST00000566779 NEFMP07197 916 aa13.47□□□□□ -0.25
GTF3C1-206ENST00000566779 MMP10P09238 476 aa13.47□□□□□ -0.25
GTF3C1-206ENST00000566779 ZNF330Q9Y3S2 320 aaPredicted RBP13.47□□□□□ -0.25
GTF3C1-206ENST00000566779 PAXIP1Q6ZW49 1069 aaPredicted RBP13.46□□□□□ -0.25
GTF3C1-206ENST00000566779 RTF1Q92541 710 aaKnown RBP13.46□□□□□ -0.25
GTF3C1-206ENST00000566779 ARHGEF1Q92888 912 aaKnown RBP13.46□□□□□ -0.25
GTF3C1-206ENST00000566779 SRP68Q9UHB9 627 aaKnown RBP13.46□□□□□ -0.25
GTF3C1-206ENST00000566779 KIF13BQ9NQT8 1826 aa13.46□□□□□ -0.26
GTF3C1-206ENST00000566779 RPS6KA4O75676 772 aa13.45□□□□□ -0.26
GTF3C1-206ENST00000566779 MCM10Q7L590 875 aa13.45□□□□□ -0.26
GTF3C1-206ENST00000566779 IL17REQ8NFR9 667 aa13.45□□□□□ -0.26
GTF3C1-206ENST00000566779 CCDC87Q9NVE4 849 aa13.45□□□□□ -0.26
GTF3C1-206ENST00000566779 AFDNP55196 1824 aaKnown RBP13.45□□□□□ -0.26
GTF3C1-206ENST00000566779 CANXP27824 592 aaKnown RBP13.44□□□□□ -0.26
GTF3C1-206ENST00000566779 DCTN1Q14203 1278 aa13.44□□□□□ -0.26
GTF3C1-206ENST00000566779 RC3H1Q5TC82 1133 aaKnown RBP13.44□□□□□ -0.26
GTF3C1-206ENST00000566779 MAPK8IP3Q9UPT6 1336 aa13.43□□□□□ -0.26
GTF3C1-206ENST00000566779 KIAA1551Q9HCM1 1747 aa13.43□□□□□ -0.26
GTF3C1-206ENST00000566779 ZBTB1Q9Y2K1 713 aa13.43□□□□□ -0.26
GTF3C1-206ENST00000566779 SCN7AQ01118 1682 aa13.43□□□□□ -0.26
GTF3C1-206ENST00000566779 COL15A1P39059 1388 aa13.43□□□□□ -0.26
GTF3C1-206ENST00000566779 LAMB4A4D0S4 1761 aa13.43□□□□□ -0.26
GTF3C1-206ENST00000566779 BTBD11A6QL63 1104 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 ZPR1O75312 459 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 FCHSD2O94868 740 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 GYS1P13807 737 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 YBX3P16989 372 aaKnown RBP eCLIP13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 INTS5Q6P9B9 1019 aaKnown RBP13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 ZNF496Q96IT1 587 aaPredicted RBP13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 CFAP44Q96MT7 982 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 CD2APQ9Y5K6 639 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 PARP3Q9Y6F1 533 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 KDM3BQ7LBC6 1761 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 CACNA1SQ13698 1873 aa13.42□□□□□ -0.26
GTF3C1-206ENST00000566779 USP42Q9H9J4 1324 aaKnown RBP13.41□□□□□ -0.26
GTF3C1-206ENST00000566779 KCNQ3O43525 872 aa13.41□□□□□ -0.26
GTF3C1-206ENST00000566779 CYP19A1P11511 503 aaPredicted RBP13.41□□□□□ -0.26
GTF3C1-206ENST00000566779 USPL1Q5W0Q7 1092 aa13.41□□□□□ -0.26
GTF3C1-206ENST00000566779 ZNF790Q6PG37 636 aa13.41□□□□□ -0.26
GTF3C1-206ENST00000566779 NLGN1Q8N2Q7 840 aa13.41□□□□□ -0.26
GTF3C1-206ENST00000566779 BRCA1P38398 1863 aaKnown RBP13.41□□□□□ -0.26
GTF3C1-206ENST00000566779 SOS1Q07889 1333 aaPredicted RBP13.4□□□□□ -0.26
GTF3C1-206ENST00000566779 RALBP1Q15311 655 aa13.4□□□□□ -0.26
GTF3C1-206ENST00000566779 CEMIPQ8WUJ3 1361 aa13.4□□□□□ -0.26
GTF3C1-206ENST00000566779 HEG1Q9ULI3 1381 aa13.4□□□□□ -0.26
GTF3C1-206ENST00000566779 BCORQ6W2J9 1755 aa13.4□□□□□ -0.26
GTF3C1-206ENST00000566779 STARD3NLO95772 234 aa13.39□□□□□ -0.27
GTF3C1-206ENST00000566779 NPM2Q86SE8 214 aaKnown RBP13.39□□□□□ -0.27
GTF3C1-206ENST00000566779 FMNL2Q96PY5 1086 aa13.39□□□□□ -0.27
GTF3C1-206ENST00000566779 THUMPD2Q9BTF0 503 aaKnown RBP13.39□□□□□ -0.27
GTF3C1-206ENST00000566779 C10orf71Q711Q0 1435 aa13.39□□□□□ -0.27
GTF3C1-206ENST00000566779 MYBBP1AQ9BQG0 1328 aaKnown RBP13.39□□□□□ -0.27
GTF3C1-206ENST00000566779 PXDNLA1KZ92 1463 aa13.38□□□□□ -0.27
GTF3C1-206ENST00000566779 PIP4K2AP48426 406 aaPredicted RBP13.38□□□□□ -0.27
GTF3C1-206ENST00000566779 BICDL1Q6ZP65 573 aa13.38□□□□□ -0.27
GTF3C1-206ENST00000566779 DDR1Q08345 913 aa13.37□□□□□ -0.27
GTF3C1-206ENST00000566779 CCDC146Q8IYE0 955 aa13.37□□□□□ -0.27
GTF3C1-206ENST00000566779 MIS18AQ9NYP9 233 aa13.37□□□□□ -0.27
GTF3C1-206ENST00000566779 ARFGEF1Q9Y6D6 1849 aa13.36□□□□□ -0.27
GTF3C1-206ENST00000566779 A0A0G2JLW4 131 aa13.36□□□□□ -0.27
GTF3C1-206ENST00000566779 PRAMEF22A3QJZ6 481 aa13.36□□□□□ -0.27
GTF3C1-206ENST00000566779 GRIN3BO60391 1043 aa13.36□□□□□ -0.27
GTF3C1-206ENST00000566779 WDR43Q15061 677 aaKnown RBP eCLIP13.36□□□□□ -0.27
GTF3C1-206ENST00000566779 SPRYD3Q8NCJ5 442 aa13.36□□□□□ -0.27
GTF3C1-206ENST00000566779 DLEC1Q9Y238 1755 aa13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 A1BGP04217 495 aa13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 NFE2L2Q16236 605 aa13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 ZNF784Q8NCA9 323 aaPredicted RBP13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 SPDYE1Q8NFV5 336 aaPredicted RBP13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 PNNQ9H307 717 aaKnown RBP13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 TBC1D2BQ9UPU7 963 aa13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 BCS1LQ9Y276 419 aa13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 RRP7AQ9Y3A4 280 aaKnown RBP13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 ANKRD31Q8N7Z5 1873 aa13.35□□□□□ -0.27
GTF3C1-206ENST00000566779 NPHP1O15259 732 aa13.34□□□□□ -0.27
GTF3C1-206ENST00000566779 DPEP1P16444 411 aa13.34□□□□□ -0.27
GTF3C1-206ENST00000566779 ZEB1P37275 1124 aaPredicted RBP13.34□□□□□ -0.27
GTF3C1-206ENST00000566779 NEUROD2Q15784 382 aa13.34□□□□□ -0.27
GTF3C1-206ENST00000566779 TEX13AQ9BXU3 409 aaPredicted RBP13.34□□□□□ -0.27
GTF3C1-206ENST00000566779 NARFQ9UHQ1 456 aa13.34□□□□□ -0.27
GTF3C1-206ENST00000566779 NRXN2Q9P2S2 1712 aa13.33□□□□□ -0.27
GTF3C1-206ENST00000566779 A0A087WZG4 1122 aa13.33□□□□□ -0.28
GTF3C1-206ENST00000566779 GSE1Q14687 1217 aa13.33□□□□□ -0.28
GTF3C1-206ENST00000566779 NFIXQ14938 502 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms