RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-211	ENST00000566550	SCNN1A	P37088	669 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	RNF144A	P50876	292 aa	Predicted RBP	4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	ZC3H6	P61129	1189 aa	Known RBP	4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	ELOA	Q14241	798 aa	Known RBP	4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	NR6A1	Q15406	480 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L2	Q6R6M4	530 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L1	Q7RTZ2	530 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	GTPBP3	Q969Y2	492 aa	Known RBP	4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	SPATA32	Q96LK8	384 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	RRAGC	Q9HB90	399 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	FKBPL	Q9UIM3	349 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	DYRK1B	Q9Y463	629 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	GPSM3	Q9Y4H4	160 aa		4.93	□□□□□ -1.62
HERPUD1-211	ENST00000566550	KRBA1	A5PL33	1030 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L5	A8MUK1	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L15	C9J2P7	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L10	C9JJH3	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L13	C9JLJ4	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L12	C9JPN9	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L11	C9JVI0	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L21	D6R901	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L18	D6R9N7	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L22	D6RA61	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L17	D6RBQ6	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L19	D6RCP7	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L20	D6RJB6	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	ABL1	P00519	1130 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	RHOQ	P17081	205 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	ATP2B4	P23634	1241 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	SSFA2	P28290	1259 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	GPC1	P35052	558 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	RAB15	P59190	212 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	USP17L24	Q0WX57	530 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	DBN1	Q16643	649 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	TSNAXIP1	Q2TAA8	658 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	CRTC2	Q53ET0	693 aa	Predicted RBP	4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	NAALADL2	Q58DX5	795 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	NPAS4	Q8IUM7	802 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	C8orf37	Q96NL8	207 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	GAS2L1	Q99501	681 aa	Predicted RBP	4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	OXCT2	Q9BYC2	517 aa	Predicted RBP	4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	TMPRSS4	Q9NRS4	437 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	SLAIN2	Q9P270	581 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	PHF24	Q9UPV7	400 aa		4.92	□□□□□ -1.62
HERPUD1-211	ENST00000566550	TAGLN	Q01995	201 aa	Known RBP	4.91	□□□□□ -1.62
HERPUD1-211	ENST00000566550	DZIP3	Q86Y13	1208 aa	Known RBP	4.91	□□□□□ -1.62
HERPUD1-211	ENST00000566550	ZNF784	Q8NCA9	323 aa	Predicted RBP	4.91	□□□□□ -1.62
HERPUD1-211	ENST00000566550	UBXN4	Q92575	508 aa		4.91	□□□□□ -1.62
HERPUD1-211	ENST00000566550	ANO2	Q9NQ90	1003 aa		4.91	□□□□□ -1.62
HERPUD1-211	ENST00000566550	GDF2	Q9UK05	429 aa	Predicted RBP	4.91	□□□□□ -1.62
HERPUD1-211	ENST00000566550		H3BRB1	525 aa		4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	RECK	O95980	971 aa		4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	CANX	P27824	592 aa	Known RBP	4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ZNF211	Q13398	564 aa	Predicted RBP	4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	GRIN2C	Q14957	1233 aa		4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	SF3A1	Q15459	793 aa	Known RBP	4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	SLC27A3	Q5K4L6	730 aa		4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	LARP1	Q6PKG0	1096 aa	Known RBP	4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	FAM200A	Q8TCP9	573 aa		4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	NLRP3	Q96P20	1036 aa		4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	TUT1	Q9H6E5	874 aa	Known RBP	4.9	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ATP5J2-PTCD1	G3V325	749 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ERVH48-1	M5A8F1	160 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	MEN1	O00255	615 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	RASA1	P20936	1047 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	AMPD1	P23109	780 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	MAPK1	P28482	360 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ERCC5	P28715	1186 aa	Predicted RBP	4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	SNRPN	P63162	240 aa	Known RBP	4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	SEPT12	Q8IYM1	358 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ADAM32	Q8TC27	787 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	CFHR5	Q9BXR6	569 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	KRTAP9-2	Q9BYQ4	174 aa		4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	NUCKS1	Q9H1E3	243 aa	Known RBP	4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	CWC22	Q9HCG8	908 aa	Known RBP	4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	MKRN1	Q9UHC7	482 aa	Known RBP	4.89	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ANKRD62	A6NC57	917 aa		4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	FAM196B	A6NMK8	535 aa		4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	LILRA1	O75019	489 aa		4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	NCL	P19338	710 aa	Known RBP	4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ADD1	P35611	737 aa	Known RBP	4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	NR1H3	Q13133	447 aa		4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	WDR44	Q5JSH3	913 aa		4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	EDARADD	Q8WWZ3	215 aa		4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	CLP1	Q92989	425 aa	Known RBP	4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ZNF594	Q96JF6	807 aa	Predicted RBP	4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	BCL11A	Q9H165	835 aa		4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	NOP53	Q9NZM5	478 aa	Known RBP	4.88	□□□□□ -1.63
HERPUD1-211	ENST00000566550	KRTAP9-6	A0A140TA67	174 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	PRMT3	O60678	531 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	F11	P03951	625 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	FBXO45	P0C2W1	286 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	NCOA4	Q13772	614 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ZMYM1	Q5SVZ6	1142 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	C9orf131	Q5VYM1	1079 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	GLYCTK	Q8IVS8	523 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	DHX37	Q8IY37	1157 aa	Known RBP	4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	GOLGA6L1	Q8N7Z2	621 aa		4.87	□□□□□ -1.63
HERPUD1-211	ENST00000566550	ESF1	Q9H501	851 aa	Known RBP	4.87	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms