RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 CRKLP46109 303 aaKnown RBP23.42■■□□□ 1.34
CLK3-217ENST00000566126 EMILIN1Q9Y6C2 1016 aa23.42■■□□□ 1.34
CLK3-217ENST00000566126 CCDC85CA6NKD9 419 aa23.41■■□□□ 1.34
CLK3-217ENST00000566126 TTLL6Q8N841 843 aa23.41■■□□□ 1.34
CLK3-217ENST00000566126 EYA1Q99502 592 aa23.4■■□□□ 1.34
CLK3-217ENST00000566126 TJP1Q07157 1748 aa23.39■■□□□ 1.34
CLK3-217ENST00000566126 ERVV-2B6SEH9 535 aa23.39■■□□□ 1.33
CLK3-217ENST00000566126 TESK2Q96S53 571 aa23.39■■□□□ 1.33
CLK3-217ENST00000566126 FER1L6Q2WGJ9 1857 aa23.39■■□□□ 1.33
CLK3-217ENST00000566126 TMEM88BA6NKF7 163 aa23.38■■□□□ 1.33
CLK3-217ENST00000566126 ANKRD26Q9UPS8 1709 aa23.38■■□□□ 1.33
CLK3-217ENST00000566126 ERFEQ4G0M1 354 aa23.37■■□□□ 1.33
CLK3-217ENST00000566126 DDNO94850 711 aaPredicted RBP23.36■■□□□ 1.33
CLK3-217ENST00000566126 NEUROD1Q13562 356 aa23.36■■□□□ 1.33
CLK3-217ENST00000566126 USPL1Q5W0Q7 1092 aa23.36■■□□□ 1.33
CLK3-217ENST00000566126 ITGBL1O95965 494 aaPredicted RBP23.35■■□□□ 1.33
CLK3-217ENST00000566126 PTCD1O75127 700 aaKnown RBP23.34■■□□□ 1.33
CLK3-217ENST00000566126 NFIXQ14938 502 aa23.34■■□□□ 1.33
CLK3-217ENST00000566126 INTS5Q6P9B9 1019 aaKnown RBP23.34■■□□□ 1.33
CLK3-217ENST00000566126 LDHDQ86WU2 507 aa23.34■■□□□ 1.33
CLK3-217ENST00000566126 C2CD5Q86YS7 1000 aa23.34■■□□□ 1.33
CLK3-217ENST00000566126 SCN4AP35499 1836 aa23.33■■□□□ 1.32
CLK3-217ENST00000566126 CARMIL3Q8ND23 1372 aa23.32■■□□□ 1.32
CLK3-217ENST00000566126 RASSF10A6NK89 507 aa23.32■■□□□ 1.32
CLK3-217ENST00000566126 WASHC2AQ641Q2 1341 aa23.32■■□□□ 1.32
CLK3-217ENST00000566126 PDE4DIPQ5VU43 2346 aa23.31■■□□□ 1.32
CLK3-217ENST00000566126 PPM1GO15355 546 aaPredicted RBP23.31■■□□□ 1.32
CLK3-217ENST00000566126 ZPR1O75312 459 aa23.31■■□□□ 1.32
CLK3-217ENST00000566126 MAP2K1Q02750 393 aaPredicted RBP23.31■■□□□ 1.32
CLK3-217ENST00000566126 DEFB115Q30KQ5 88 aa23.3■■□□□ 1.32
CLK3-217ENST00000566126 H0YIN7 160 aa23.29■■□□□ 1.32
CLK3-217ENST00000566126 SERPINB2P05120 415 aa23.29■■□□□ 1.32
CLK3-217ENST00000566126 CABP4P57796 275 aa23.29■■□□□ 1.32
CLK3-217ENST00000566126 ANKRD31Q8N7Z5 1873 aa23.29■■□□□ 1.32
CLK3-217ENST00000566126 TAF1DQ9H5J8 278 aaPredicted RBP23.29■■□□□ 1.32
CLK3-217ENST00000566126 ADAMTSL1Q8N6G6 1762 aa23.29■■□□□ 1.32
CLK3-217ENST00000566126 WDR33Q9C0J8 1336 aaKnown RBP23.29■■□□□ 1.32
CLK3-217ENST00000566126 ST20-MTHFSA0A0A6YYL1 179 aa23.28■■□□□ 1.32
CLK3-217ENST00000566126 C21orf2O43822 256 aa23.28■■□□□ 1.32
CLK3-217ENST00000566126 THSD7BQ9C0I4 1608 aa23.27■■□□□ 1.32
CLK3-217ENST00000566126 IQCA1LA6NCM1 817 aa23.27■■□□□ 1.32
CLK3-217ENST00000566126 HSP90AB1P08238 724 aaKnown RBP23.27■■□□□ 1.32
CLK3-217ENST00000566126 BCL2L12Q9HB09 334 aa23.27■■□□□ 1.32
CLK3-217ENST00000566126 ZNF219Q9P2Y4 722 aaPredicted RBP23.27■■□□□ 1.32
CLK3-217ENST00000566126 SOS1Q07889 1333 aaPredicted RBP23.27■■□□□ 1.32
CLK3-217ENST00000566126 LTBP3Q9NS15 1303 aa23.27■■□□□ 1.32
CLK3-217ENST00000566126 COL11A2P13942 1736 aaPredicted RBP23.26■■□□□ 1.31
CLK3-217ENST00000566126 L3MBTL3Q96JM7 780 aaPredicted RBP23.26■■□□□ 1.31
CLK3-217ENST00000566126 NARFQ9UHQ1 456 aa23.25■■□□□ 1.31
CLK3-217ENST00000566126 TAOK3Q9H2K8 898 aa23.24■■□□□ 1.31
CLK3-217ENST00000566126 DNAJC10Q8IXB1 793 aa23.22■■□□□ 1.31
CLK3-217ENST00000566126 NFATC2IPQ8NCF5 419 aa23.22■■□□□ 1.31
CLK3-217ENST00000566126 ZNF622Q969S3 477 aaKnown RBP eCLIP23.22■■□□□ 1.313e-6■□□□□ 10
CLK3-217ENST00000566126 EAPPQ56P03 285 aaPredicted RBP23.21■■□□□ 1.31
CLK3-217ENST00000566126 CFAP44Q96MT7 982 aa23.21■■□□□ 1.31
CLK3-217ENST00000566126 CACNA1SQ13698 1873 aa23.21■■□□□ 1.31
CLK3-217ENST00000566126 SLX4Q8IY92 1834 aa23.2■■□□□ 1.3
CLK3-217ENST00000566126 COL15A1P39059 1388 aa23.2■■□□□ 1.3
CLK3-217ENST00000566126 EIF4A2Q14240 407 aaKnown RBP23.2■■□□□ 1.3
CLK3-217ENST00000566126 ZNF530Q6P9A1 599 aaPredicted RBP23.2■■□□□ 1.3
CLK3-217ENST00000566126 CARD14Q9BXL6 1004 aa23.19■■□□□ 1.3
CLK3-217ENST00000566126 ABT1Q9ULW3 272 aaKnown RBP23.19■■□□□ 1.3
CLK3-217ENST00000566126 SLC24A1O60721 1099 aa23.18■■□□□ 1.3
CLK3-217ENST00000566126 MAP1SQ66K74 1059 aaPredicted RBP23.18■■□□□ 1.3
CLK3-217ENST00000566126 CNTROBQ8N137 903 aa23.18■■□□□ 1.3
CLK3-217ENST00000566126 MCOLN1Q9GZU1 580 aa23.18■■□□□ 1.3
CLK3-217ENST00000566126 POLKQ9UBT6 870 aa23.18■■□□□ 1.3
CLK3-217ENST00000566126 CLEC11AQ9Y240 323 aa23.18■■□□□ 1.3
CLK3-217ENST00000566126 LTBP1Q14766 1721 aa23.18■■□□□ 1.3
CLK3-217ENST00000566126 MTHFSP49914 203 aa23.17■■□□□ 1.3
CLK3-217ENST00000566126 PLEKHO1Q53GL0 409 aaPredicted RBP23.17■■□□□ 1.3
CLK3-217ENST00000566126 TSKSQ9UJT2 592 aa23.17■■□□□ 1.3
CLK3-217ENST00000566126 CASP8AP2Q9UKL3 1982 aa23.16■■□□□ 1.3
CLK3-217ENST00000566126 CYP19A1P11511 503 aaPredicted RBP23.16■■□□□ 1.3
CLK3-217ENST00000566126 ARFGEF2Q9Y6D5 1785 aa23.15■■□□□ 1.3
CLK3-217ENST00000566126 CAPNS2Q96L46 248 aa23.15■■□□□ 1.3
CLK3-217ENST00000566126 BEGAINQ9BUH8 593 aa23.15■■□□□ 1.3
CLK3-217ENST00000566126 HACL1Q9UJ83 578 aa23.15■■□□□ 1.3
CLK3-217ENST00000566126 PDZRN3Q9UPQ7 1066 aa23.15■■□□□ 1.3
CLK3-217ENST00000566126 ZBTB1Q9Y2K1 713 aa23.15■■□□□ 1.3
CLK3-217ENST00000566126 SCN11AQ9UI33 1791 aa23.14■■□□□ 1.3
CLK3-217ENST00000566126 ZNF541Q9H0D2 1346 aa23.14■■□□□ 1.3
CLK3-217ENST00000566126 EPHX2P34913 555 aa23.14■■□□□ 1.29
CLK3-217ENST00000566126 BICDL1Q6ZP65 573 aa23.14■■□□□ 1.29
CLK3-217ENST00000566126 BRIP1Q9BX63 1249 aa23.14■■□□□ 1.29
CLK3-217ENST00000566126 PDE6BP35913 854 aa23.13■■□□□ 1.29
CLK3-217ENST00000566126 CCDC24Q8N4L8 307 aa23.13■■□□□ 1.29
CLK3-217ENST00000566126 CYP4F22Q6NT55 531 aa23.12■■□□□ 1.29
CLK3-217ENST00000566126 GPR101Q96P66 508 aaPredicted RBP23.12■■□□□ 1.29
CLK3-217ENST00000566126 AMOTQ4VCS5 1084 aa23.11■■□□□ 1.29
CLK3-217ENST00000566126 PRR5LQ6MZQ0 368 aa23.11■■□□□ 1.29
CLK3-217ENST00000566126 DDX21Q9NR30 783 aaKnown RBP eCLIP23.11■■□□□ 1.29
CLK3-217ENST00000566126 PRPF40BQ6NWY9 871 aaKnown RBP23.1■■□□□ 1.29
CLK3-217ENST00000566126 PNMA8AQ86V59 439 aaPredicted RBP23.1■■□□□ 1.29
CLK3-217ENST00000566126 RNF123Q5XPI4 1314 aa23.09■■□□□ 1.29
CLK3-217ENST00000566126 ECE1P42892 770 aa23.09■■□□□ 1.29
CLK3-217ENST00000566126 FMR1Q06787 632 aaKnown RBP eCLIP23.09■■□□□ 1.29
CLK3-217ENST00000566126 C1orf141Q5JVX7 400 aa23.09■■□□□ 1.29
CLK3-217ENST00000566126 TBC1D9BQ66K14 1250 aa23.09■■□□□ 1.29
CLK3-217ENST00000566126 GRM1Q13255 1194 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms