RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 CEMIPQ8WUJ3 1361 aa18.08■□□□□ 0.49
VPS9D1-204ENST00000565023 HEG1Q9ULI3 1381 aa18.08■□□□□ 0.49
VPS9D1-204ENST00000565023 YBX3P16989 372 aaKnown RBP eCLIP18.08■□□□□ 0.48
VPS9D1-204ENST00000565023 PARP3Q9Y6F1 533 aa18.08■□□□□ 0.48
VPS9D1-204ENST00000565023 N4BP2Q86UW6 1770 aaPredicted RBP18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 SOS1Q07889 1333 aaPredicted RBP18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 USP42Q9H9J4 1324 aaKnown RBP18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 MAPK8IP3Q9UPT6 1336 aa18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 ZPR1O75312 459 aa18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 FKBP8Q14318 412 aa18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 USPL1Q5W0Q7 1092 aa18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 VSIG10Q8N0Z9 540 aa18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 FMNL2Q96PY5 1086 aa18.07■□□□□ 0.48
VPS9D1-204ENST00000565023 COL15A1P39059 1388 aa18.06■□□□□ 0.48
VPS9D1-204ENST00000565023 MYBBP1AQ9BQG0 1328 aaKnown RBP18.06■□□□□ 0.48
VPS9D1-204ENST00000565023 STARD3NLO95772 234 aa18.06■□□□□ 0.48
VPS9D1-204ENST00000565023 MIS18AQ9NYP9 233 aa18.05■□□□□ 0.48
VPS9D1-204ENST00000565023 PLEKHF1Q96S99 279 aa18.04■□□□□ 0.48
VPS9D1-204ENST00000565023 THUMPD2Q9BTF0 503 aaKnown RBP18.04■□□□□ 0.48
VPS9D1-204ENST00000565023 PRAMEF22A3QJZ6 481 aa18.03■□□□□ 0.48
VPS9D1-204ENST00000565023 PIP4K2AP48426 406 aaPredicted RBP18.03■□□□□ 0.48
VPS9D1-204ENST00000565023 NFE2L2Q16236 605 aa18.03■□□□□ 0.48
VPS9D1-204ENST00000565023 KIF13BQ9NQT8 1826 aa18.02■□□□□ 0.48
VPS9D1-204ENST00000565023 HTATSF1O43719 755 aaKnown RBP18.02■□□□□ 0.48
VPS9D1-204ENST00000565023 A1BGP04217 495 aa18.02■□□□□ 0.48
VPS9D1-204ENST00000565023 DDR1Q08345 913 aa18.02■□□□□ 0.48
VPS9D1-204ENST00000565023 CCDC146Q8IYE0 955 aa18.02■□□□□ 0.48
VPS9D1-204ENST00000565023 TEX13AQ9BXU3 409 aaPredicted RBP18.02■□□□□ 0.48
VPS9D1-204ENST00000565023 PNNQ9H307 717 aaKnown RBP18.02■□□□□ 0.48
VPS9D1-204ENST00000565023 A0A0G2JLW4 131 aa18.01■□□□□ 0.47
VPS9D1-204ENST00000565023 GRIN3BO60391 1043 aa18.01■□□□□ 0.47
VPS9D1-204ENST00000565023 TAF7Q15545 349 aaPredicted RBP18.01■□□□□ 0.47
VPS9D1-204ENST00000565023 BICDL1Q6ZP65 573 aa18.01■□□□□ 0.47
VPS9D1-204ENST00000565023 NARFQ9UHQ1 456 aa18.01■□□□□ 0.47
VPS9D1-204ENST00000565023 USP16Q9Y5T5 823 aa18.01■□□□□ 0.47
VPS9D1-204ENST00000565023 KIAA1551Q9HCM1 1747 aa18.01■□□□□ 0.47
VPS9D1-204ENST00000565023 AFDNP55196 1824 aaKnown RBP18■□□□□ 0.47
VPS9D1-204ENST00000565023 C10orf71Q711Q0 1435 aa18■□□□□ 0.47
VPS9D1-204ENST00000565023 NPM2Q86SE8 214 aaKnown RBP18■□□□□ 0.47
VPS9D1-204ENST00000565023 TBC1D2BQ9UPU7 963 aa18■□□□□ 0.47
VPS9D1-204ENST00000565023 RRP7AQ9Y3A4 280 aaKnown RBP18■□□□□ 0.47
VPS9D1-204ENST00000565023 PXDNLA1KZ92 1463 aa18■□□□□ 0.47
VPS9D1-204ENST00000565023 WDR43Q15061 677 aaKnown RBP eCLIP17.99■□□□□ 0.47
VPS9D1-204ENST00000565023 BCL2L12Q9HB09 334 aa17.99■□□□□ 0.47
VPS9D1-204ENST00000565023 A0A087WZG4 1122 aa17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 POLRMTO00411 1230 aaKnown RBP17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 GIGYF1O75420 1035 aaPredicted RBP17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 DPEP1P16444 411 aa17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 EIF5P55010 431 aaKnown RBP17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 NFIXQ14938 502 aa17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 NEUROD2Q15784 382 aa17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 PRKRIP1Q9H875 184 aaPredicted RBP17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 BCS1LQ9Y276 419 aa17.98■□□□□ 0.47
VPS9D1-204ENST00000565023 KDM3BQ7LBC6 1761 aa17.97■□□□□ 0.47
VPS9D1-204ENST00000565023 SNRPA1P09661 255 aaKnown RBP17.97■□□□□ 0.47
VPS9D1-204ENST00000565023 TM4SF1P30408 202 aa17.97■□□□□ 0.47
VPS9D1-204ENST00000565023 RIPK4P57078 832 aa17.97■□□□□ 0.47
VPS9D1-204ENST00000565023 IL6STP40189 918 aaPredicted RBP17.96■□□□□ 0.47
VPS9D1-204ENST00000565023 TGFB2P61812 414 aa17.96■□□□□ 0.47
VPS9D1-204ENST00000565023 SCN7AQ01118 1682 aa17.96■□□□□ 0.47
VPS9D1-204ENST00000565023 SERPINB2P05120 415 aa17.95■□□□□ 0.46
VPS9D1-204ENST00000565023 LAMB4A4D0S4 1761 aa17.94■□□□□ 0.46
VPS9D1-204ENST00000565023 CHRNA5P30532 468 aa17.94■□□□□ 0.46
VPS9D1-204ENST00000565023 TMPOP42166 694 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-204ENST00000565023 TBC1D9BQ66K14 1250 aa17.94■□□□□ 0.46
VPS9D1-204ENST00000565023 DZIP3Q86Y13 1208 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-204ENST00000565023 PNISRQ8TF01 805 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-204ENST00000565023 BRCA1P38398 1863 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-204ENST00000565023 CCDC24Q8N4L8 307 aa17.93■□□□□ 0.46
VPS9D1-204ENST00000565023 NGEFQ8N5V2 710 aa17.93■□□□□ 0.46
VPS9D1-204ENST00000565023 BCORQ6W2J9 1755 aa17.92■□□□□ 0.46
VPS9D1-204ENST00000565023 TSPYL4Q9UJ04 414 aa17.92■□□□□ 0.46
VPS9D1-204ENST00000565023 ADAMTS8Q9UP79 889 aa17.92■□□□□ 0.46
VPS9D1-204ENST00000565023 NBPF26B4DH59 902 aa17.91■□□□□ 0.46
VPS9D1-204ENST00000565023 NBPF10Q6P3W6 841 aaKnown RBP17.91■□□□□ 0.46
VPS9D1-204ENST00000565023 NBPF15Q8N660 670 aa17.91■□□□□ 0.46
VPS9D1-204ENST00000565023 RUNDC1Q96C34 613 aa17.91■□□□□ 0.46
VPS9D1-204ENST00000565023 NRXN2Q9P2S2 1712 aa17.91■□□□□ 0.46
VPS9D1-204ENST00000565023 NPHP1O15259 732 aa17.9■□□□□ 0.46
VPS9D1-204ENST00000565023 CAMTA2O94983 1202 aa17.9■□□□□ 0.46
VPS9D1-204ENST00000565023 KCNA3P22001 575 aa17.9■□□□□ 0.46
VPS9D1-204ENST00000565023 EIF4A1P60842 406 aaKnown RBP17.9■□□□□ 0.46
VPS9D1-204ENST00000565023 ARHGAP27Q6ZUM4 889 aa17.9■□□□□ 0.46
VPS9D1-204ENST00000565023 PIM2Q9P1W9 311 aa17.9■□□□□ 0.46
VPS9D1-204ENST00000565023 LAS1LQ9Y4W2 734 aaKnown RBP17.9■□□□□ 0.46
VPS9D1-204ENST00000565023 CARMIL3Q8ND23 1372 aa17.9■□□□□ 0.46
VPS9D1-204ENST00000565023 LMOD3Q0VAK6 560 aa17.89■□□□□ 0.45
VPS9D1-204ENST00000565023 ARFGEF1Q9Y6D6 1849 aa17.88■□□□□ 0.45
VPS9D1-204ENST00000565023 MYL6BP14649 208 aa17.88■□□□□ 0.45
VPS9D1-204ENST00000565023 ZNF526Q8TF50 670 aaPredicted RBP17.88■□□□□ 0.45
VPS9D1-204ENST00000565023 ANKRD31Q8N7Z5 1873 aa17.87■□□□□ 0.45
VPS9D1-204ENST00000565023 DALRD3Q5D0E6 543 aaKnown RBP17.87■□□□□ 0.45
VPS9D1-204ENST00000565023 SETDB2Q96T68 719 aa17.87■□□□□ 0.45
VPS9D1-204ENST00000565023 FAM177BA6PVY3 158 aa17.86■□□□□ 0.45
VPS9D1-204ENST00000565023 EIF2S2P20042 333 aaKnown RBP17.86■□□□□ 0.45
VPS9D1-204ENST00000565023 C2CD5Q86YS7 1000 aa17.86■□□□□ 0.45
VPS9D1-204ENST00000565023 ATP10DQ9P241 1426 aa17.86■□□□□ 0.45
VPS9D1-204ENST00000565023 CACNA1SQ13698 1873 aa17.86■□□□□ 0.45
VPS9D1-204ENST00000565023 ANP32CO43423 234 aa17.85■□□□□ 0.45
VPS9D1-204ENST00000565023 CCDC184Q52MB2 194 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms