RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 PRIM1P49642 420 aaKnown RBP17.57■□□□□ 0.4
SMPD3-205ENST00000563455 DCAF5Q96JK2 942 aa17.57■□□□□ 0.4
SMPD3-205ENST00000563455 PDGFDQ9GZP0 370 aaPredicted RBP17.56■□□□□ 0.4
SMPD3-205ENST00000563455 POLD1P28340 1107 aa17.55■□□□□ 0.4
SMPD3-205ENST00000563455 ARXQ96QS3 562 aa17.55■□□□□ 0.4
SMPD3-205ENST00000563455 TFCP2L1Q9NZI6 479 aa17.55■□□□□ 0.4
SMPD3-205ENST00000563455 KDM2BQ8NHM5 1336 aa17.54■□□□□ 0.4
SMPD3-205ENST00000563455 BTBD11A6QL63 1104 aa17.54■□□□□ 0.4
SMPD3-205ENST00000563455 ELL2O00472 640 aaPredicted RBP17.54■□□□□ 0.4
SMPD3-205ENST00000563455 ITPRIPQ8IWB1 547 aa17.54■□□□□ 0.4
SMPD3-205ENST00000563455 SYT17Q9BSW7 474 aa17.54■□□□□ 0.4
SMPD3-205ENST00000563455 ABCC4O15439 1325 aa17.53■□□□□ 0.4
SMPD3-205ENST00000563455 PCDH11XQ9BZA7 1347 aa17.53■□□□□ 0.4
SMPD3-205ENST00000563455 PCDH11YQ9BZA8 1340 aa17.53■□□□□ 0.4
SMPD3-205ENST00000563455 NHSQ6T4R5 1651 aa17.53■□□□□ 0.4
SMPD3-205ENST00000563455 PHKG2P15735 406 aa17.53■□□□□ 0.4
SMPD3-205ENST00000563455 LRRC4BQ9NT99 713 aa17.53■□□□□ 0.4
SMPD3-205ENST00000563455 RLBP1P12271 317 aa17.52■□□□□ 0.4
SMPD3-205ENST00000563455 INTS3Q68E01 1043 aaKnown RBP17.52■□□□□ 0.4
SMPD3-205ENST00000563455 AKT1S1Q96B36 256 aa17.52■□□□□ 0.4
SMPD3-205ENST00000563455 FHDC1Q9C0D6 1143 aaPredicted RBP17.52■□□□□ 0.4
SMPD3-205ENST00000563455 SLC4A2P04920 1241 aa17.51■□□□□ 0.39
SMPD3-205ENST00000563455 EIF4A1P60842 406 aaKnown RBP17.51■□□□□ 0.39
SMPD3-205ENST00000563455 MPRIPQ6WCQ1 1025 aa17.51■□□□□ 0.39
SMPD3-205ENST00000563455 ZBTB40Q9NUA8 1239 aa17.51■□□□□ 0.39
SMPD3-205ENST00000563455 CCNL1Q9UK58 526 aaPredicted RBP17.51■□□□□ 0.39
SMPD3-205ENST00000563455 ERVV-2B6SEH9 535 aa17.5■□□□□ 0.39
SMPD3-205ENST00000563455 CCT4P50991 539 aaKnown RBP17.5■□□□□ 0.39
SMPD3-205ENST00000563455 HDAC1Q13547 482 aaPredicted RBP17.5■□□□□ 0.39
SMPD3-205ENST00000563455 NKX1-1Q15270 411 aaPredicted RBP17.5■□□□□ 0.39
SMPD3-205ENST00000563455 SGIP1Q9BQI5 828 aa17.5■□□□□ 0.39
SMPD3-205ENST00000563455 SLC52A2Q9HAB3 445 aa17.5■□□□□ 0.39
SMPD3-205ENST00000563455 LGR6Q9HBX8 967 aa17.5■□□□□ 0.39
SMPD3-205ENST00000563455 ADAMTS7Q9UKP4 1686 aa17.5■□□□□ 0.39
SMPD3-205ENST00000563455 TMEM57Q8N5G2 664 aa17.49■□□□□ 0.39
SMPD3-205ENST00000563455 FLAD1Q8NFF5 587 aa17.49■□□□□ 0.39
SMPD3-205ENST00000563455 ZNF827Q17R98 1081 aa17.48■□□□□ 0.39
SMPD3-205ENST00000563455 SMARCC1Q92922 1105 aaPredicted RBP17.48■□□□□ 0.39
SMPD3-205ENST00000563455 MIS18AQ9NYP9 233 aa17.48■□□□□ 0.39
SMPD3-205ENST00000563455 CASZ1Q86V15 1759 aa17.48■□□□□ 0.39
SMPD3-205ENST00000563455 MEGF6O75095 1541 aa17.47■□□□□ 0.39
SMPD3-205ENST00000563455 ZBTB7BO15156 539 aaPredicted RBP17.47■□□□□ 0.39
SMPD3-205ENST00000563455 HDGFL1Q5TGJ6 251 aa17.47■□□□□ 0.39
SMPD3-205ENST00000563455 HEG1Q9ULI3 1381 aa17.47■□□□□ 0.39
SMPD3-205ENST00000563455 RGPD2P0DJD1 1756 aa17.46■□□□□ 0.39
SMPD3-205ENST00000563455 MSH5O43196 834 aa17.46■□□□□ 0.39
SMPD3-205ENST00000563455 DBF4Q9UBU7 674 aaPredicted RBP17.46■□□□□ 0.39
SMPD3-205ENST00000563455 HDAC5Q9UQL6 1122 aa17.46■□□□□ 0.39
SMPD3-205ENST00000563455 PKD1L3Q7Z443 1732 aa17.46■□□□□ 0.39
SMPD3-205ENST00000563455 ZNF790Q6PG37 636 aa17.45■□□□□ 0.38
SMPD3-205ENST00000563455 TTC5Q8N0Z6 440 aa17.45■□□□□ 0.38
SMPD3-205ENST00000563455 PNPLA7Q6ZV29 1317 aa17.45■□□□□ 0.38
SMPD3-205ENST00000563455 MRC1P22897 1456 aa17.44■□□□□ 0.38
SMPD3-205ENST00000563455 CYP27B1O15528 508 aa17.44■□□□□ 0.38
SMPD3-205ENST00000563455 CABP4P57796 275 aa17.44■□□□□ 0.38
SMPD3-205ENST00000563455 GPR162Q16538 588 aa17.44■□□□□ 0.38
SMPD3-205ENST00000563455 CACNA1FO60840 1977 aa17.44■□□□□ 0.38
SMPD3-205ENST00000563455 BTAF1O14981 1849 aa17.43■□□□□ 0.38
SMPD3-205ENST00000563455 GIGYF1O75420 1035 aaPredicted RBP17.43■□□□□ 0.38
SMPD3-205ENST00000563455 FLIIQ13045 1269 aa17.43■□□□□ 0.38
SMPD3-205ENST00000563455 RPAP2Q8IXW5 612 aaPredicted RBP17.43■□□□□ 0.38
SMPD3-205ENST00000563455 HYPKQ9NX55 129 aa17.43■□□□□ 0.38
SMPD3-205ENST00000563455 KAT6BQ8WYB5 2073 aa17.43■□□□□ 0.38
SMPD3-205ENST00000563455 KRT24Q2M2I5 525 aa17.42■□□□□ 0.38
SMPD3-205ENST00000563455 GCC1Q96CN9 775 aa17.42■□□□□ 0.38
SMPD3-205ENST00000563455 TSHZ2Q9NRE2 1034 aa17.42■□□□□ 0.38
SMPD3-205ENST00000563455 PCDHB15Q9Y5E8 787 aa17.42■□□□□ 0.38
SMPD3-205ENST00000563455 KDM3BQ7LBC6 1761 aa17.42■□□□□ 0.38
SMPD3-205ENST00000563455 PXDNLA1KZ92 1463 aa17.42■□□□□ 0.38
SMPD3-205ENST00000563455 IBTKQ9P2D0 1353 aaPredicted RBP17.41■□□□□ 0.38
SMPD3-205ENST00000563455 GNAI3P08754 354 aa17.41■□□□□ 0.38
SMPD3-205ENST00000563455 SNRPA1P09661 255 aaKnown RBP17.41■□□□□ 0.38
SMPD3-205ENST00000563455 KCNQ4P56696 695 aa17.41■□□□□ 0.38
SMPD3-205ENST00000563455 KLHL34Q8N239 644 aa17.41■□□□□ 0.38
SMPD3-205ENST00000563455 FMNL2Q96PY5 1086 aa17.41■□□□□ 0.38
SMPD3-205ENST00000563455 ERBB4Q15303 1308 aa17.41■□□□□ 0.38
SMPD3-205ENST00000563455 KDM6AO15550 1401 aaPredicted RBP17.4■□□□□ 0.38
SMPD3-205ENST00000563455 DDX58O95786 925 aaKnown RBP17.4■□□□□ 0.38
SMPD3-205ENST00000563455 FKBP5Q13451 457 aaPredicted RBP17.4■□□□□ 0.38
SMPD3-205ENST00000563455 NFATC2IPQ8NCF5 419 aa17.4■□□□□ 0.38
SMPD3-205ENST00000563455 TNNQ9UQP3 1299 aa17.4■□□□□ 0.38
SMPD3-205ENST00000563455 PAPPAQ13219 1627 aa17.39■□□□□ 0.38
SMPD3-205ENST00000563455 SMC5Q8IY18 1101 aa17.39■□□□□ 0.37
SMPD3-205ENST00000563455 PALLDQ8WX93 1383 aa17.39■□□□□ 0.37
SMPD3-205ENST00000563455 GRIN3BO60391 1043 aa17.38■□□□□ 0.37
SMPD3-205ENST00000563455 HMMRO75330 724 aa17.38■□□□□ 0.37
SMPD3-205ENST00000563455 IGHDP01880 384 aa17.38■□□□□ 0.37
SMPD3-205ENST00000563455 COL23A1Q86Y22 540 aaPredicted RBP17.38■□□□□ 0.37
SMPD3-205ENST00000563455 AK7Q96M32 723 aa17.38■□□□□ 0.37
SMPD3-205ENST00000563455 TEX13AQ9BXU3 409 aaPredicted RBP17.38■□□□□ 0.37
SMPD3-205ENST00000563455 DDX21Q9NR30 783 aaKnown RBP eCLIP17.38■□□□□ 0.37
SMPD3-205ENST00000563455 TMOD3Q9NYL9 352 aa17.38■□□□□ 0.37
SMPD3-205ENST00000563455 SCN11AQ9UI33 1791 aa17.38■□□□□ 0.37
SMPD3-205ENST00000563455 SIPA1L3O60292 1781 aaPredicted RBP17.36■□□□□ 0.37
SMPD3-205ENST00000563455 PIGBQ92521 554 aa17.36■□□□□ 0.37
SMPD3-205ENST00000563455 EIF2S2P20042 333 aaKnown RBP17.35■□□□□ 0.37
SMPD3-205ENST00000563455 EIF5BO60841 1220 aaKnown RBP17.34■□□□□ 0.37
SMPD3-205ENST00000563455 ALDH1L1O75891 902 aa17.34■□□□□ 0.37
SMPD3-205ENST00000563455 VSIG10Q8N0Z9 540 aa17.34■□□□□ 0.37
SMPD3-205ENST00000563455 ZNF784Q8NCA9 323 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms