RNA–Protein interactions for RNA: ENST00000562729.5

CHRFAM7A-204, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

TSL 4

Gene CHRFAM7A, Length 573 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-204ENST00000562729 KDM6AO15550 1401 aaPredicted RBP12.44□□□□□ -0.42
CHRFAM7A-204ENST00000562729 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.43□□□□□ -0.42
CHRFAM7A-204ENST00000562729 NEFMP07197 916 aa12.43□□□□□ -0.42
CHRFAM7A-204ENST00000562729 SSFA2P28290 1259 aa12.43□□□□□ -0.42
CHRFAM7A-204ENST00000562729 PCDH10Q9P2E7 1040 aa12.43□□□□□ -0.42
CHRFAM7A-204ENST00000562729 RTCBQ9Y3I0 505 aaKnown RBP12.43□□□□□ -0.42
CHRFAM7A-204ENST00000562729 U2AF1L5P0DN76 240 aaPredicted RBP12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 PPP2R1AP30153 589 aa12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 U2AF1Q01081 240 aaKnown RBP eCLIP12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 ITPK1Q13572 414 aa12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 MTHFSDQ2M296 383 aaKnown RBP12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 PLCD3Q8N3E9 789 aa12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 GAS2L2Q8NHY3 880 aa12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 FAM163AQ96GL9 167 aaPredicted RBP12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 SGIP1Q9BQI5 828 aa12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 COLQQ9Y215 455 aaPredicted RBP12.42□□□□□ -0.42
CHRFAM7A-204ENST00000562729 SCN11AQ9UI33 1791 aa12.41□□□□□ -0.42
CHRFAM7A-204ENST00000562729 TEFQ10587 303 aa12.41□□□□□ -0.42
CHRFAM7A-204ENST00000562729 GPR162Q16538 588 aa12.41□□□□□ -0.42
CHRFAM7A-204ENST00000562729 TRAPPC3LQ5T215 181 aa12.41□□□□□ -0.42
CHRFAM7A-204ENST00000562729 SLC52A2Q9HAB3 445 aa12.41□□□□□ -0.42
CHRFAM7A-204ENST00000562729 GNAT3A8MTJ3 354 aa12.4□□□□□ -0.42
CHRFAM7A-204ENST00000562729 RNMTO43148 476 aaKnown RBP12.4□□□□□ -0.42
CHRFAM7A-204ENST00000562729 YY1P25490 414 aa12.4□□□□□ -0.42
CHRFAM7A-204ENST00000562729 TTC5Q8N0Z6 440 aa12.4□□□□□ -0.42
CHRFAM7A-204ENST00000562729 LGR6Q9HBX8 967 aa12.4□□□□□ -0.42
CHRFAM7A-204ENST00000562729 COL3A1P02461 1466 aaPredicted RBP12.4□□□□□ -0.43
CHRFAM7A-204ENST00000562729 PRKAR2BP31323 418 aa12.39□□□□□ -0.43
CHRFAM7A-204ENST00000562729 RFC4P35249 363 aa12.39□□□□□ -0.43
CHRFAM7A-204ENST00000562729 NUBP1P53384 320 aa12.39□□□□□ -0.43
CHRFAM7A-204ENST00000562729 SMIM5Q71RC9 77 aa12.39□□□□□ -0.43
CHRFAM7A-204ENST00000562729 UBR3Q6ZT12 1888 aa12.39□□□□□ -0.43
CHRFAM7A-204ENST00000562729 MAP3K5Q99683 1374 aa12.39□□□□□ -0.43
CHRFAM7A-204ENST00000562729 RTF1Q92541 710 aaKnown RBP12.38□□□□□ -0.43
CHRFAM7A-204ENST00000562729 CNTNAP4Q9C0A0 1308 aa12.37□□□□□ -0.43
CHRFAM7A-204ENST00000562729 VIRMAQ69YN4 1812 aaKnown RBP12.37□□□□□ -0.43
CHRFAM7A-204ENST00000562729 SLC39A6Q13433 755 aa12.37□□□□□ -0.43
CHRFAM7A-204ENST00000562729 RC3H1Q5TC82 1133 aaKnown RBP12.37□□□□□ -0.43
CHRFAM7A-204ENST00000562729 PCDHB13Q9Y5F0 798 aa12.37□□□□□ -0.43
CHRFAM7A-204ENST00000562729 ZNF831Q5JPB2 1677 aa12.37□□□□□ -0.43
CHRFAM7A-204ENST00000562729 SEC24BO95487 1268 aa12.36□□□□□ -0.43
CHRFAM7A-204ENST00000562729 CRKLP46109 303 aaKnown RBP12.36□□□□□ -0.43
CHRFAM7A-204ENST00000562729 DDX10Q13206 875 aaKnown RBP12.36□□□□□ -0.43
CHRFAM7A-204ENST00000562729 AMIGO3Q86WK7 504 aa12.36□□□□□ -0.43
CHRFAM7A-204ENST00000562729 SLC4A9Q96Q91 983 aa12.36□□□□□ -0.43
CHRFAM7A-204ENST00000562729 TRIM35Q9UPQ4 493 aa12.36□□□□□ -0.43
CHRFAM7A-204ENST00000562729 COL5A3P25940 1745 aaPredicted RBP12.36□□□□□ -0.43
CHRFAM7A-204ENST00000562729 COL24A1Q17RW2 1714 aa12.36□□□□□ -0.43
CHRFAM7A-204ENST00000562729 RPS6KA4O75676 772 aa12.35□□□□□ -0.43
CHRFAM7A-204ENST00000562729 FCHSD2O94868 740 aa12.35□□□□□ -0.43
CHRFAM7A-204ENST00000562729 NPM2Q86SE8 214 aaKnown RBP12.35□□□□□ -0.43
CHRFAM7A-204ENST00000562729 NLGN1Q8N2Q7 840 aa12.35□□□□□ -0.43
CHRFAM7A-204ENST00000562729 NLGN2Q8NFZ4 835 aa12.35□□□□□ -0.43
CHRFAM7A-204ENST00000562729 RSPH6AQ9H0K4 717 aa12.35□□□□□ -0.43
CHRFAM7A-204ENST00000562729 PNNQ9H307 717 aaKnown RBP12.35□□□□□ -0.43
CHRFAM7A-204ENST00000562729 CD2APQ9Y5K6 639 aa12.35□□□□□ -0.43
CHRFAM7A-204ENST00000562729 ZPR1O75312 459 aa12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 MMP10P09238 476 aa12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 DNAJC10Q8IXB1 793 aa12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 ARHGEF1Q92888 912 aaKnown RBP12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 PHACTR3Q96KR7 559 aa12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 CCDC87Q9NVE4 849 aa12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 ZBTB47Q9UFB7 747 aaPredicted RBP12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 MAPK8IP3Q9UPT6 1336 aa12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 MRC1P22897 1456 aa12.34□□□□□ -0.43
CHRFAM7A-204ENST00000562729 BTBD11A6QL63 1104 aa12.33□□□□□ -0.44
CHRFAM7A-204ENST00000562729 STARD3NLO95772 234 aa12.33□□□□□ -0.44
CHRFAM7A-204ENST00000562729 ZEB1P37275 1124 aaPredicted RBP12.33□□□□□ -0.44
CHRFAM7A-204ENST00000562729 RALBP1Q15311 655 aa12.33□□□□□ -0.44
CHRFAM7A-204ENST00000562729 IER5LQ5T953 404 aa12.33□□□□□ -0.44
CHRFAM7A-204ENST00000562729 PARP3Q9Y6F1 533 aa12.33□□□□□ -0.44
CHRFAM7A-204ENST00000562729 TJP1Q07157 1748 aa12.32□□□□□ -0.44
CHRFAM7A-204ENST00000562729 GRIN3BO60391 1043 aa12.32□□□□□ -0.44
CHRFAM7A-204ENST00000562729 IFNL1Q8IU54 200 aa12.32□□□□□ -0.44
CHRFAM7A-204ENST00000562729 ZNF330Q9Y3S2 320 aaPredicted RBP12.32□□□□□ -0.44
CHRFAM7A-204ENST00000562729 ZNF790Q6PG37 636 aa12.31□□□□□ -0.44
CHRFAM7A-204ENST00000562729 VSIG10Q8N0Z9 540 aa12.31□□□□□ -0.44
CHRFAM7A-204ENST00000562729 IL17REQ8NFR9 667 aa12.31□□□□□ -0.44
CHRFAM7A-204ENST00000562729 FMNL2Q96PY5 1086 aa12.31□□□□□ -0.44
CHRFAM7A-204ENST00000562729 TEX13AQ9BXU3 409 aaPredicted RBP12.31□□□□□ -0.44
CHRFAM7A-204ENST00000562729 ADAMTS7Q9UKP4 1686 aa12.3□□□□□ -0.44
CHRFAM7A-204ENST00000562729 CYP19A1P11511 503 aaPredicted RBP12.3□□□□□ -0.44
CHRFAM7A-204ENST00000562729 GYS1P13807 737 aa12.3□□□□□ -0.44
CHRFAM7A-204ENST00000562729 CANXP27824 592 aaKnown RBP12.3□□□□□ -0.44
CHRFAM7A-204ENST00000562729 MCM10Q7L590 875 aa12.3□□□□□ -0.44
CHRFAM7A-204ENST00000562729 WWC3Q9ULE0 1092 aa12.3□□□□□ -0.44
CHRFAM7A-204ENST00000562729 KCPQ6ZWJ8 1503 aa12.3□□□□□ -0.44
CHRFAM7A-204ENST00000562729 C4AP0C0L4 1744 aa12.29□□□□□ -0.44
CHRFAM7A-204ENST00000562729 INTS5Q6P9B9 1019 aaKnown RBP12.29□□□□□ -0.44
CHRFAM7A-204ENST00000562729 SRP68Q9UHB9 627 aaKnown RBP12.29□□□□□ -0.44
CHRFAM7A-204ENST00000562729 USP42Q9H9J4 1324 aaKnown RBP12.29□□□□□ -0.44
CHRFAM7A-204ENST00000562729 CICQ96RK0 1608 aaPredicted RBP12.29□□□□□ -0.44
CHRFAM7A-204ENST00000562729 MYH14Q7Z406 1995 aaKnown RBP12.29□□□□□ -0.44
CHRFAM7A-204ENST00000562729 A0A087WZG4 1122 aa12.28□□□□□ -0.44
CHRFAM7A-204ENST00000562729 HTATSF1O43719 755 aaKnown RBP12.28□□□□□ -0.44
CHRFAM7A-204ENST00000562729 WDR43Q15061 677 aaKnown RBP eCLIP12.28□□□□□ -0.44
CHRFAM7A-204ENST00000562729 USPL1Q5W0Q7 1092 aa12.28□□□□□ -0.44
CHRFAM7A-204ENST00000562729 ZNF496Q96IT1 587 aaPredicted RBP12.28□□□□□ -0.44
CHRFAM7A-204ENST00000562729 ZBTB1Q9Y2K1 713 aa12.28□□□□□ -0.44
CHRFAM7A-204ENST00000562729 CHD4Q14839 1912 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms