RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 STARD3NLO95772 234 aa13.73□□□□□ -0.21
CLK3-205ENST00000561673 TM4SF1P30408 202 aa13.73□□□□□ -0.21
CLK3-205ENST00000561673 USPL1Q5W0Q7 1092 aa13.73□□□□□ -0.21
CLK3-205ENST00000561673 CHD4Q14839 1912 aa13.72□□□□□ -0.21
CLK3-205ENST00000561673 BTBD11A6QL63 1104 aa13.72□□□□□ -0.21
CLK3-205ENST00000561673 KCNQ3O43525 872 aa13.72□□□□□ -0.21
CLK3-205ENST00000561673 CANXP27824 592 aaKnown RBP13.72□□□□□ -0.21
CLK3-205ENST00000561673 DDR1Q08345 913 aa13.72□□□□□ -0.21
CLK3-205ENST00000561673 MCM10Q7L590 875 aa13.72□□□□□ -0.21
CLK3-205ENST00000561673 DPEP1P16444 411 aa13.71□□□□□ -0.21
CLK3-205ENST00000561673 RTF1Q92541 710 aaKnown RBP13.71□□□□□ -0.21
CLK3-205ENST00000561673 TEX13AQ9BXU3 409 aaPredicted RBP13.71□□□□□ -0.21
CLK3-205ENST00000561673 NARFQ9UHQ1 456 aa13.71□□□□□ -0.21
CLK3-205ENST00000561673 PXDNLA1KZ92 1463 aa13.71□□□□□ -0.21
CLK3-205ENST00000561673 C10orf71Q711Q0 1435 aa13.71□□□□□ -0.22
CLK3-205ENST00000561673 COL15A1P39059 1388 aa13.71□□□□□ -0.22
CLK3-205ENST00000561673 HEG1Q9ULI3 1381 aa13.71□□□□□ -0.22
CLK3-205ENST00000561673 C4AP0C0L4 1744 aa13.7□□□□□ -0.22
CLK3-205ENST00000561673 VIRMAQ69YN4 1812 aaKnown RBP13.7□□□□□ -0.22
CLK3-205ENST00000561673 POLRMTO00411 1230 aaKnown RBP13.7□□□□□ -0.22
CLK3-205ENST00000561673 EIF5P55010 431 aaKnown RBP13.7□□□□□ -0.22
CLK3-205ENST00000561673 DCTN1Q14203 1278 aa13.7□□□□□ -0.22
CLK3-205ENST00000561673 FMNL2Q96PY5 1086 aa13.7□□□□□ -0.22
CLK3-205ENST00000561673 HTATSF1O43719 755 aaKnown RBP13.69□□□□□ -0.22
CLK3-205ENST00000561673 KCNA3P22001 575 aa13.69□□□□□ -0.22
CLK3-205ENST00000561673 DDX10Q13206 875 aaKnown RBP13.69□□□□□ -0.22
CLK3-205ENST00000561673 PLEKHF1Q96S99 279 aa13.69□□□□□ -0.22
CLK3-205ENST00000561673 BCL2L12Q9HB09 334 aa13.69□□□□□ -0.22
CLK3-205ENST00000561673 UBR2Q8IWV8 1755 aa13.68□□□□□ -0.22
CLK3-205ENST00000561673 A1BGP04217 495 aa13.68□□□□□ -0.22
CLK3-205ENST00000561673 NFIXQ14938 502 aa13.68□□□□□ -0.22
CLK3-205ENST00000561673 BCS1LQ9Y276 419 aa13.68□□□□□ -0.22
CLK3-205ENST00000561673 A0A087WZG4 1122 aa13.67□□□□□ -0.22
CLK3-205ENST00000561673 RALBP1Q15311 655 aa13.67□□□□□ -0.22
CLK3-205ENST00000561673 USP16Q9Y5T5 823 aa13.67□□□□□ -0.22
CLK3-205ENST00000561673 SIPA1L3O60292 1781 aaPredicted RBP13.67□□□□□ -0.22
CLK3-205ENST00000561673 KIF13BQ9NQT8 1826 aa13.67□□□□□ -0.22
CLK3-205ENST00000561673 PRAMEF22A3QJZ6 481 aa13.66□□□□□ -0.22
CLK3-205ENST00000561673 HOXD11P31277 338 aaPredicted RBP13.66□□□□□ -0.22
CLK3-205ENST00000561673 TAF7Q15545 349 aaPredicted RBP13.66□□□□□ -0.22
CLK3-205ENST00000561673 KIAA1551Q9HCM1 1747 aa13.65□□□□□ -0.22
CLK3-205ENST00000561673 NEFMP07197 916 aa13.65□□□□□ -0.22
CLK3-205ENST00000561673 CHRNA5P30532 468 aa13.65□□□□□ -0.22
CLK3-205ENST00000561673 IL6STP40189 918 aaPredicted RBP13.65□□□□□ -0.22
CLK3-205ENST00000561673 MIS18AQ9NYP9 233 aa13.65□□□□□ -0.22
CLK3-205ENST00000561673 PIM2Q9P1W9 311 aa13.65□□□□□ -0.22
CLK3-205ENST00000561673 TBC1D2BQ9UPU7 963 aa13.65□□□□□ -0.22
CLK3-205ENST00000561673 ZNF330Q9Y3S2 320 aaPredicted RBP13.65□□□□□ -0.22
CLK3-205ENST00000561673 N4BP2Q86UW6 1770 aaPredicted RBP13.65□□□□□ -0.22
CLK3-205ENST00000561673 SERPINB2P05120 415 aa13.64□□□□□ -0.23
CLK3-205ENST00000561673 SNRPA1P09661 255 aaKnown RBP13.64□□□□□ -0.23
CLK3-205ENST00000561673 C1QTNF8P60827 252 aa13.64□□□□□ -0.23
CLK3-205ENST00000561673 NFE2L2Q16236 605 aa13.64□□□□□ -0.23
CLK3-205ENST00000561673 BICDL1Q6ZP65 573 aa13.64□□□□□ -0.23
CLK3-205ENST00000561673 ARHGAP27Q6ZUM4 889 aa13.64□□□□□ -0.23
CLK3-205ENST00000561673 PNNQ9H307 717 aaKnown RBP13.64□□□□□ -0.23
CLK3-205ENST00000561673 ATP10DQ9P241 1426 aa13.64□□□□□ -0.23
CLK3-205ENST00000561673 ADCY9O60503 1353 aa13.63□□□□□ -0.23
CLK3-205ENST00000561673 GIGYF1O75420 1035 aaPredicted RBP13.63□□□□□ -0.23
CLK3-205ENST00000561673 PIP4K2AP48426 406 aaPredicted RBP13.63□□□□□ -0.23
CLK3-205ENST00000561673 DALRD3Q5D0E6 543 aaKnown RBP13.63□□□□□ -0.23
CLK3-205ENST00000561673 TBC1D9BQ66K14 1250 aa13.63□□□□□ -0.23
CLK3-205ENST00000561673 CAMTA2O94983 1202 aa13.62□□□□□ -0.23
CLK3-205ENST00000561673 NPM2Q86SE8 214 aaKnown RBP13.62□□□□□ -0.23
CLK3-205ENST00000561673 ZNF526Q8TF50 670 aaPredicted RBP13.61□□□□□ -0.23
CLK3-205ENST00000561673 THUMPD2Q9BTF0 503 aaKnown RBP13.61□□□□□ -0.23
CLK3-205ENST00000561673 GPBP1L1Q9HC44 474 aaPredicted RBP13.61□□□□□ -0.23
CLK3-205ENST00000561673 MAPK8IP3Q9UPT6 1336 aa13.61□□□□□ -0.23
CLK3-205ENST00000561673 NBPF26B4DH59 902 aa13.6□□□□□ -0.23
CLK3-205ENST00000561673 NBPF10Q6P3W6 841 aaKnown RBP13.6□□□□□ -0.23
CLK3-205ENST00000561673 DZIP3Q86Y13 1208 aaKnown RBP13.6□□□□□ -0.23
CLK3-205ENST00000561673 NBPF15Q8N660 670 aa13.6□□□□□ -0.23
CLK3-205ENST00000561673 PNISRQ8TF01 805 aaKnown RBP13.6□□□□□ -0.23
CLK3-205ENST00000561673 MYBBP1AQ9BQG0 1328 aaKnown RBP13.6□□□□□ -0.23
CLK3-205ENST00000561673 SETDB2Q96T68 719 aa13.59□□□□□ -0.23
CLK3-205ENST00000561673 CARMIL3Q8ND23 1372 aa13.58□□□□□ -0.23
CLK3-205ENST00000561673 CEP350Q5VT06 3117 aa13.58□□□□□ -0.24
CLK3-205ENST00000561673 RIPK4P57078 832 aa13.58□□□□□ -0.24
CLK3-205ENST00000561673 EIF4A1P60842 406 aaKnown RBP13.58□□□□□ -0.24
CLK3-205ENST00000561673 C2CD5Q86YS7 1000 aa13.58□□□□□ -0.24
CLK3-205ENST00000561673 CCDC24Q8N4L8 307 aa13.58□□□□□ -0.24
CLK3-205ENST00000561673 NRXN2Q9P2S2 1712 aa13.58□□□□□ -0.24
CLK3-205ENST00000561673 H0YIN7 160 aa13.57□□□□□ -0.24
CLK3-205ENST00000561673 SLC4A2P04920 1241 aa13.57□□□□□ -0.24
CLK3-205ENST00000561673 C9orf131Q5VYM1 1079 aa13.57□□□□□ -0.24
CLK3-205ENST00000561673 PRR5LQ6MZQ0 368 aa13.57□□□□□ -0.24
CLK3-205ENST00000561673 CLEC4GQ6UXB4 293 aa13.57□□□□□ -0.24
CLK3-205ENST00000561673 BRIP1Q9BX63 1249 aa13.57□□□□□ -0.24
CLK3-205ENST00000561673 BRCA1P38398 1863 aaKnown RBP13.57□□□□□ -0.24
CLK3-205ENST00000561673 AFDNP55196 1824 aaKnown RBP13.56□□□□□ -0.24
CLK3-205ENST00000561673 TMPOP42166 694 aaKnown RBP13.56□□□□□ -0.24
CLK3-205ENST00000561673 TTLL6Q8N841 843 aa13.56□□□□□ -0.24
CLK3-205ENST00000561673 PDE6BP35913 854 aa13.55□□□□□ -0.24
CLK3-205ENST00000561673 CCDC146Q8IYE0 955 aa13.55□□□□□ -0.24
CLK3-205ENST00000561673 CNBD1Q8NA66 436 aa13.55□□□□□ -0.24
CLK3-205ENST00000561673 PRKRIP1Q9H875 184 aaPredicted RBP13.55□□□□□ -0.24
CLK3-205ENST00000561673 SCN7AQ01118 1682 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 SENP3-EIF4A1A0A087X0R7 540 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 NPHP1O15259 732 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 HLFQ16534 295 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms