RNA–Protein interactions for RNA: ENST00000561638.1

TMEM249-201, Transcript of transmembrane protein 249, humanhuman

TSL 2

Gene TMEM249, Length 1,762 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM249-201ENST00000561638 SMC4Q9NTJ3 1288 aa29.92■■■□□ 2.38
TMEM249-201ENST00000561638 ZNF831Q5JPB2 1677 aa29.91■■■□□ 2.38
TMEM249-201ENST00000561638 CYP19A1P11511 503 aaPredicted RBP29.9■■■□□ 2.38
TMEM249-201ENST00000561638 RARSP54136 660 aaKnown RBP29.9■■■□□ 2.38
TMEM249-201ENST00000561638 SSH1Q8WYL5 1049 aa29.9■■■□□ 2.38
TMEM249-201ENST00000561638 CHPF2Q9P2E5 772 aa29.9■■■□□ 2.38
TMEM249-201ENST00000561638 ALDH1L2Q3SY69 923 aa29.89■■■□□ 2.38
TMEM249-201ENST00000561638 LRRC4BQ9NT99 713 aa29.89■■■□□ 2.38
TMEM249-201ENST00000561638 DBF4Q9UBU7 674 aaPredicted RBP29.89■■■□□ 2.38
TMEM249-201ENST00000561638 DEFB132Q7Z7B7 95 aa29.88■■■□□ 2.37
TMEM249-201ENST00000561638 LINC00116Q8NCU8 138 aa29.88■■■□□ 2.37
TMEM249-201ENST00000561638 CICQ96RK0 1608 aaPredicted RBP29.88■■■□□ 2.37
TMEM249-201ENST00000561638 RGPD3A6NKT7 1758 aaPredicted RBP29.87■■■□□ 2.37
TMEM249-201ENST00000561638 RGPD4Q7Z3J3 1758 aa29.87■■■□□ 2.37
TMEM249-201ENST00000561638 A1BGP04217 495 aa29.87■■■□□ 2.37
TMEM249-201ENST00000561638 HMGB2P26583 209 aaKnown RBP29.87■■■□□ 2.37
TMEM249-201ENST00000561638 PROM2Q8N271 834 aa29.87■■■□□ 2.37
TMEM249-201ENST00000561638 SLC4A2P04920 1241 aa29.87■■■□□ 2.37
TMEM249-201ENST00000561638 CRKLP46109 303 aaKnown RBP29.87■■■□□ 2.37
TMEM249-201ENST00000561638 PIP4K2AP48426 406 aaPredicted RBP29.87■■■□□ 2.37
TMEM249-201ENST00000561638 EZH2Q15910 746 aaKnown RBP29.87■■■□□ 2.37
TMEM249-201ENST00000561638 MYL6BP14649 208 aa29.86■■■□□ 2.37
TMEM249-201ENST00000561638 UPF1Q92900 1129 aaKnown RBP eCLIP29.86■■■□□ 2.37
TMEM249-201ENST00000561638 ERBB4Q15303 1308 aa29.85■■■□□ 2.37
TMEM249-201ENST00000561638 CAMKK2Q96RR4 588 aa29.85■■■□□ 2.37
TMEM249-201ENST00000561638 CCDC87Q9NVE4 849 aa29.85■■■□□ 2.37
TMEM249-201ENST00000561638 ZNF330Q9Y3S2 320 aaPredicted RBP29.85■■■□□ 2.37
TMEM249-201ENST00000561638 CANXP27824 592 aaKnown RBP29.85■■■□□ 2.37
TMEM249-201ENST00000561638 BCAR3O75815 825 aa29.84■■■□□ 2.37
TMEM249-201ENST00000561638 ANXA1P04083 346 aa29.84■■■□□ 2.37
TMEM249-201ENST00000561638 DDX21Q9NR30 783 aaKnown RBP eCLIP29.84■■■□□ 2.37
TMEM249-201ENST00000561638 COL5A3P25940 1745 aaPredicted RBP29.84■■■□□ 2.37
TMEM249-201ENST00000561638 NPM2Q86SE8 214 aaKnown RBP29.83■■■□□ 2.37
TMEM249-201ENST00000561638 ZBTB1Q9Y2K1 713 aa29.83■■■□□ 2.37
TMEM249-201ENST00000561638 PROSER3Q2NL68 480 aa29.82■■■□□ 2.36
TMEM249-201ENST00000561638 CNTNAP4Q9C0A0 1308 aa29.82■■■□□ 2.36
TMEM249-201ENST00000561638 HYPKQ9NX55 129 aa29.82■■■□□ 2.36
TMEM249-201ENST00000561638 NBPF26B4DH59 902 aa29.81■■■□□ 2.36
TMEM249-201ENST00000561638 PDIA6Q15084 440 aa29.81■■■□□ 2.36
TMEM249-201ENST00000561638 NBPF14Q5TI25 921 aa29.81■■■□□ 2.36
TMEM249-201ENST00000561638 NBPF10Q6P3W6 841 aaKnown RBP29.81■■■□□ 2.36
TMEM249-201ENST00000561638 NBPF15Q8N660 670 aa29.81■■■□□ 2.36
TMEM249-201ENST00000561638 AK7Q96M32 723 aa29.81■■■□□ 2.36
TMEM249-201ENST00000561638 TAF1LQ8IZX4 1826 aa29.81■■■□□ 2.36
TMEM249-201ENST00000561638 INTS5Q6P9B9 1019 aaKnown RBP29.8■■■□□ 2.36
TMEM249-201ENST00000561638 MRPL50Q8N5N7 158 aaKnown RBP29.8■■■□□ 2.36
TMEM249-201ENST00000561638 FRAT1Q92837 279 aaPredicted RBP29.8■■■□□ 2.36
TMEM249-201ENST00000561638 KIF16BQ96L93 1317 aa29.79■■■□□ 2.36
TMEM249-201ENST00000561638 C4BP0C0L5 1744 aa29.79■■■□□ 2.36
TMEM249-201ENST00000561638 GNPATO15228 680 aa29.79■■■□□ 2.36
TMEM249-201ENST00000561638 RC3H1Q5TC82 1133 aaKnown RBP29.79■■■□□ 2.36
TMEM249-201ENST00000561638 AIMP1Q12904 312 aaKnown RBP29.77■■■□□ 2.36
TMEM249-201ENST00000561638 ARXQ96QS3 562 aa29.77■■■□□ 2.36
TMEM249-201ENST00000561638 PHAXQ9H814 394 aaKnown RBP29.77■■■□□ 2.36
TMEM249-201ENST00000561638 IL6STP40189 918 aaPredicted RBP29.76■■■□□ 2.35
TMEM249-201ENST00000561638 FLIIQ13045 1269 aa29.75■■■□□ 2.35
TMEM249-201ENST00000561638 RTCBQ9Y3I0 505 aaKnown RBP29.75■■■□□ 2.35
TMEM249-201ENST00000561638 MYH14Q7Z406 1995 aaKnown RBP29.75■■■□□ 2.35
TMEM249-201ENST00000561638 BRPF1P55201 1214 aaPredicted RBP29.75■■■□□ 2.35
TMEM249-201ENST00000561638 G2E3Q7L622 706 aa29.75■■■□□ 2.35
TMEM249-201ENST00000561638 NOB1Q9ULX3 412 aaKnown RBP29.75■■■□□ 2.35
TMEM249-201ENST00000561638 CACNA1FO60840 1977 aa29.74■■■□□ 2.35
TMEM249-201ENST00000561638 FKBP5Q13451 457 aaPredicted RBP29.74■■■□□ 2.35
TMEM249-201ENST00000561638 XAGE3Q8WTP9 111 aa29.74■■■□□ 2.35
TMEM249-201ENST00000561638 COPS6Q7L5N1 327 aa29.73■■■□□ 2.35
TMEM249-201ENST00000561638 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.73■■■□□ 2.35
TMEM249-201ENST00000561638 IPO8O15397 1037 aaKnown RBP29.72■■■□□ 2.35
TMEM249-201ENST00000561638 SUPT16HQ9Y5B9 1047 aaKnown RBP29.72■■■□□ 2.35
TMEM249-201ENST00000561638 RREB1Q92766 1687 aa29.72■■■□□ 2.35
TMEM249-201ENST00000561638 RPS6KA4O75676 772 aa29.72■■■□□ 2.35
TMEM249-201ENST00000561638 LRP10Q7Z4F1 713 aa29.72■■■□□ 2.35
TMEM249-201ENST00000561638 TFCP2L1Q9NZI6 479 aa29.72■■■□□ 2.35
TMEM249-201ENST00000561638 PHF14O94880 888 aa29.71■■■□□ 2.35
TMEM249-201ENST00000561638 DDX58O95786 925 aaKnown RBP29.71■■■□□ 2.35
TMEM249-201ENST00000561638 EIF5P55010 431 aaKnown RBP29.71■■■□□ 2.35
TMEM249-201ENST00000561638 PTPRCP08575 1304 aa29.71■■■□□ 2.35
TMEM249-201ENST00000561638 COL15A1P39059 1388 aa29.7■■■□□ 2.35
TMEM249-201ENST00000561638 ZKSCAN2Q63HK3 967 aa29.69■■■□□ 2.34
TMEM249-201ENST00000561638 KIF6Q6ZMV9 814 aa29.69■■■□□ 2.34
TMEM249-201ENST00000561638 ZNF827Q17R98 1081 aa29.69■■■□□ 2.34
TMEM249-201ENST00000561638 STK32BQ9NY57 414 aa29.69■■■□□ 2.34
TMEM249-201ENST00000561638 PLIN1O60240 522 aa29.68■■■□□ 2.34
TMEM249-201ENST00000561638 A0A087WZG4 1122 aa29.67■■■□□ 2.34
TMEM249-201ENST00000561638 RRP1P56182 461 aaKnown RBP29.67■■■□□ 2.34
TMEM249-201ENST00000561638 NUP188Q5SRE5 1749 aa29.67■■■□□ 2.34
TMEM249-201ENST00000561638 DZIP3Q86Y13 1208 aaKnown RBP29.67■■■□□ 2.34
TMEM249-201ENST00000561638 AKT1S1Q96B36 256 aa29.67■■■□□ 2.34
TMEM249-201ENST00000561638 TRAPPC3LQ5T215 181 aa29.67■■■□□ 2.34
TMEM249-201ENST00000561638 TTLL7Q6ZT98 887 aa29.67■■■□□ 2.34
TMEM249-201ENST00000561638 SMIM5Q71RC9 77 aa29.67■■■□□ 2.34
TMEM249-201ENST00000561638 TBC1D2BQ9UPU7 963 aa29.67■■■□□ 2.34
TMEM249-201ENST00000561638 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.66■■■□□ 2.34
TMEM249-201ENST00000561638 ATF7IPQ6VMQ6 1270 aa29.66■■■□□ 2.34
TMEM249-201ENST00000561638 ANKRD13DQ6ZTN6 518 aa29.66■■■□□ 2.34
TMEM249-201ENST00000561638 API5Q9BZZ5 524 aaKnown RBP29.66■■■□□ 2.34
TMEM249-201ENST00000561638 SSFA2P28290 1259 aa29.65■■■□□ 2.34
TMEM249-201ENST00000561638 RIC3Q7Z5B4 369 aa29.65■■■□□ 2.34
TMEM249-201ENST00000561638 ARHGAP45Q92619 1136 aa29.65■■■□□ 2.34
TMEM249-201ENST00000561638 ANO8Q9HCE9 1232 aaPredicted RBP29.65■■■□□ 2.34
TMEM249-201ENST00000561638 ADRA2BP18089 450 aa29.64■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms