RNA–Protein interactions for RNA: ENST00000560483.1

LRRC28-219, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-219ENST00000560483 PCDH11XQ9BZA7 1347 aa10.74□□□□□ -0.69
LRRC28-219ENST00000560483 PCDH11YQ9BZA8 1340 aa10.74□□□□□ -0.69
LRRC28-219ENST00000560483 ARHGAP33O14559 1287 aa10.73□□□□□ -0.69
LRRC28-219ENST00000560483 HMOX1P09601 288 aa10.73□□□□□ -0.69
LRRC28-219ENST00000560483 EZH2Q15910 746 aaKnown RBP10.73□□□□□ -0.69
LRRC28-219ENST00000560483 SULT6B1Q6IMI4 303 aa10.73□□□□□ -0.69
LRRC28-219ENST00000560483 NPC1L1Q9UHC9 1359 aa10.72□□□□□ -0.69
LRRC28-219ENST00000560483 KCNQ2O43526 872 aa10.71□□□□□ -0.69
LRRC28-219ENST00000560483 PLEKHO1Q53GL0 409 aaPredicted RBP10.71□□□□□ -0.69
LRRC28-219ENST00000560483 C1orf141Q5JVX7 400 aa10.71□□□□□ -0.69
LRRC28-219ENST00000560483 SBF2Q86WG5 1849 aa10.71□□□□□ -0.69
LRRC28-219ENST00000560483 NUDCQ9Y266 331 aa10.71□□□□□ -0.69
LRRC28-219ENST00000560483 TNS1Q9HBL0 1735 aaKnown RBP10.7□□□□□ -0.7
LRRC28-219ENST00000560483 PPP2R1AP30153 589 aa10.7□□□□□ -0.7
LRRC28-219ENST00000560483 NBPF14Q5TI25 921 aa10.7□□□□□ -0.7
LRRC28-219ENST00000560483 ZNF530Q6P9A1 599 aaPredicted RBP10.7□□□□□ -0.7
LRRC28-219ENST00000560483 AEBP1Q8IUX7 1158 aa10.7□□□□□ -0.7
LRRC28-219ENST00000560483 HCSTQ9UBK5 93 aa10.7□□□□□ -0.7
LRRC28-219ENST00000560483 IGSF1Q8N6C5 1336 aa10.69□□□□□ -0.7
LRRC28-219ENST00000560483 PSDA5PKW4 1024 aaPredicted RBP10.69□□□□□ -0.7
LRRC28-219ENST00000560483 IL13P35225 146 aa10.69□□□□□ -0.7
LRRC28-219ENST00000560483 PRIM1P49642 420 aaKnown RBP10.69□□□□□ -0.7
LRRC28-219ENST00000560483 MPRIPQ6WCQ1 1025 aa10.69□□□□□ -0.7
LRRC28-219ENST00000560483 PTF1AQ7RTS3 328 aa10.69□□□□□ -0.7
LRRC28-219ENST00000560483 IFNL2Q8IZJ0 200 aa10.69□□□□□ -0.7
LRRC28-219ENST00000560483 DOT1LQ8TEK3 1739 aa10.68□□□□□ -0.7
LRRC28-219ENST00000560483 NEFMP07197 916 aa10.68□□□□□ -0.7
LRRC28-219ENST00000560483 U2AF1L5P0DN76 240 aaPredicted RBP10.68□□□□□ -0.7
LRRC28-219ENST00000560483 U2AF1Q01081 240 aaKnown RBP eCLIP10.68□□□□□ -0.7
LRRC28-219ENST00000560483 AMOTQ4VCS5 1084 aa10.68□□□□□ -0.7
LRRC28-219ENST00000560483 PTCD2Q8WV60 388 aaKnown RBP10.68□□□□□ -0.7
LRRC28-219ENST00000560483 KCTD12Q96CX2 325 aaKnown RBP10.68□□□□□ -0.7
LRRC28-219ENST00000560483 CYP27B1O15528 508 aa10.67□□□□□ -0.7
LRRC28-219ENST00000560483 RALBP1Q15311 655 aa10.67□□□□□ -0.7
LRRC28-219ENST00000560483 PLPP6Q8IY26 295 aa10.67□□□□□ -0.7
LRRC28-219ENST00000560483 CAMKK2Q96RR4 588 aa10.67□□□□□ -0.7
LRRC28-219ENST00000560483 TAOK2Q9UL54 1235 aa10.67□□□□□ -0.7
LRRC28-219ENST00000560483 NHSQ6T4R5 1651 aa10.66□□□□□ -0.7
LRRC28-219ENST00000560483 PARD3Q8TEW0 1356 aa10.66□□□□□ -0.7
LRRC28-219ENST00000560483 BTAF1O14981 1849 aa10.66□□□□□ -0.7
LRRC28-219ENST00000560483 HSP90AB1P08238 724 aaKnown RBP10.66□□□□□ -0.7
LRRC28-219ENST00000560483 PHKG2P15735 406 aa10.66□□□□□ -0.7
LRRC28-219ENST00000560483 DSG2Q14126 1118 aa10.66□□□□□ -0.7
LRRC28-219ENST00000560483 R3HDM1Q15032 1099 aaKnown RBP10.66□□□□□ -0.7
LRRC28-219ENST00000560483 TMOD3Q9NYL9 352 aa10.66□□□□□ -0.7
LRRC28-219ENST00000560483 SHANK3Q9BYB0 1731 aa10.66□□□□□ -0.7
LRRC28-219ENST00000560483 PLSCR1O15162 318 aa10.65□□□□□ -0.7
LRRC28-219ENST00000560483 TXNRD1Q16881 649 aa10.65□□□□□ -0.7
LRRC28-219ENST00000560483 STK32BQ9NY57 414 aa10.65□□□□□ -0.7
LRRC28-219ENST00000560483 BCL9O00512 1426 aa10.65□□□□□ -0.7
LRRC28-219ENST00000560483 PKD1L3Q7Z443 1732 aa10.64□□□□□ -0.71
LRRC28-219ENST00000560483 CABP4P57796 275 aa10.64□□□□□ -0.71
LRRC28-219ENST00000560483 TK2O00142 265 aa10.63□□□□□ -0.71
LRRC28-219ENST00000560483 PRKAR2BP31323 418 aa10.63□□□□□ -0.71
LRRC28-219ENST00000560483 FOXK1P85037 733 aa10.63□□□□□ -0.71
LRRC28-219ENST00000560483 DCAF5Q96JK2 942 aa10.63□□□□□ -0.71
LRRC28-219ENST00000560483 KCNK17Q96T54 332 aa10.63□□□□□ -0.71
LRRC28-219ENST00000560483 CCNL1Q9UK58 526 aaPredicted RBP10.63□□□□□ -0.71
LRRC28-219ENST00000560483 MYBBP1AQ9BQG0 1328 aaKnown RBP10.62□□□□□ -0.71
LRRC28-219ENST00000560483 NCAPD2Q15021 1401 aa10.62□□□□□ -0.71
LRRC28-219ENST00000560483 ANP32CO43423 234 aa10.62□□□□□ -0.71
LRRC28-219ENST00000560483 KCNQ4P56696 695 aa10.62□□□□□ -0.71
LRRC28-219ENST00000560483 WDR43Q15061 677 aaKnown RBP eCLIP10.62□□□□□ -0.71
LRRC28-219ENST00000560483 GAS2L2Q8NHY3 880 aa10.62□□□□□ -0.71
LRRC28-219ENST00000560483 SMARCC1Q92922 1105 aaPredicted RBP10.62□□□□□ -0.71
LRRC28-219ENST00000560483 ITGB4P16144 1822 aa10.62□□□□□ -0.71
LRRC28-219ENST00000560483 MAPK8IP3Q9UPT6 1336 aa10.61□□□□□ -0.71
LRRC28-219ENST00000560483 MTHFSDQ2M296 383 aaKnown RBP10.61□□□□□ -0.71
LRRC28-219ENST00000560483 AKAP4Q5JQC9 854 aa10.61□□□□□ -0.71
LRRC28-219ENST00000560483 KDRP35968 1356 aa10.61□□□□□ -0.71
LRRC28-219ENST00000560483 NUP188Q5SRE5 1749 aa10.61□□□□□ -0.71
LRRC28-219ENST00000560483 COL3A1P02461 1466 aaPredicted RBP10.61□□□□□ -0.71
LRRC28-219ENST00000560483 RREB1Q92766 1687 aa10.6□□□□□ -0.71
LRRC28-219ENST00000560483 NKX1-1Q15270 411 aaPredicted RBP10.6□□□□□ -0.71
LRRC28-219ENST00000560483 PIGBQ92521 554 aa10.6□□□□□ -0.71
LRRC28-219ENST00000560483 RTF1Q92541 710 aaKnown RBP10.6□□□□□ -0.71
LRRC28-219ENST00000560483 PNNQ9H307 717 aaKnown RBP10.6□□□□□ -0.71
LRRC28-219ENST00000560483 PALLDQ8WX93 1383 aa10.6□□□□□ -0.71
LRRC28-219ENST00000560483 RGPD3A6NKT7 1758 aaPredicted RBP10.6□□□□□ -0.71
LRRC28-219ENST00000560483 RGPD4Q7Z3J3 1758 aa10.6□□□□□ -0.71
LRRC28-219ENST00000560483 TOGARAM1Q9Y4F4 1720 aa10.59□□□□□ -0.71
LRRC28-219ENST00000560483 GNAT3A8MTJ3 354 aa10.59□□□□□ -0.71
LRRC28-219ENST00000560483 ERVV-2B6SEH9 535 aa10.59□□□□□ -0.71
LRRC28-219ENST00000560483 TEFQ10587 303 aa10.59□□□□□ -0.71
LRRC28-219ENST00000560483 SLC27A3Q5K4L6 730 aa10.59□□□□□ -0.71
LRRC28-219ENST00000560483 NFATC2IPQ8NCF5 419 aa10.59□□□□□ -0.71
LRRC28-219ENST00000560483 PRKRIP1Q9H875 184 aaPredicted RBP10.59□□□□□ -0.71
LRRC28-219ENST00000560483 TFCP2L1Q9NZI6 479 aa10.59□□□□□ -0.71
LRRC28-219ENST00000560483 PLEKHG2Q9H7P9 1386 aa10.58□□□□□ -0.72
LRRC28-219ENST00000560483 FCHSD2O94868 740 aa10.58□□□□□ -0.72
LRRC28-219ENST00000560483 ATP6V1AP38606 617 aa10.58□□□□□ -0.72
LRRC28-219ENST00000560483 PPP4R3BQ5MIZ7 849 aa10.58□□□□□ -0.72
LRRC28-219ENST00000560483 RSPH6AQ9H0K4 717 aa10.58□□□□□ -0.72
LRRC28-219ENST00000560483 ANO8Q9HCE9 1232 aaPredicted RBP10.58□□□□□ -0.72
LRRC28-219ENST00000560483 GPHNQ9NQX3 736 aaPredicted RBP10.58□□□□□ -0.72
LRRC28-219ENST00000560483 PPP1R1BQ9UD71 204 aaPredicted RBP10.58□□□□□ -0.72
LRRC28-219ENST00000560483 ASAP1Q9ULH1 1129 aa10.58□□□□□ -0.72
LRRC28-219ENST00000560483 MAP3K5Q99683 1374 aa10.57□□□□□ -0.72
LRRC28-219ENST00000560483 VIRMAQ69YN4 1812 aaKnown RBP10.57□□□□□ -0.72
LRRC28-219ENST00000560483 RNMTO43148 476 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms