RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 BCL2L12Q9HB09 334 aa23.74■■□□□ 1.39
HDDC3-205ENST00000559898 NUDCQ9Y266 331 aa23.74■■□□□ 1.39
HDDC3-205ENST00000559898 AFDNP55196 1824 aaKnown RBP23.74■■□□□ 1.39
HDDC3-205ENST00000559898 COL15A1P39059 1388 aa23.74■■□□□ 1.39
HDDC3-205ENST00000559898 PARP3Q9Y6F1 533 aa23.73■■□□□ 1.39
HDDC3-205ENST00000559898 HEG1Q9ULI3 1381 aa23.73■■□□□ 1.39
HDDC3-205ENST00000559898 PRAMEF22A3QJZ6 481 aa23.72■■□□□ 1.39
HDDC3-205ENST00000559898 DPEP1P16444 411 aa23.72■■□□□ 1.39
HDDC3-205ENST00000559898 TTC5Q8N0Z6 440 aa23.72■■□□□ 1.39
HDDC3-205ENST00000559898 VSIG10Q8N0Z9 540 aa23.72■■□□□ 1.39
HDDC3-205ENST00000559898 POLRMTO00411 1230 aaKnown RBP23.71■■□□□ 1.39
HDDC3-205ENST00000559898 FCHSD2O94868 740 aa23.71■■□□□ 1.39
HDDC3-205ENST00000559898 TM4SF1P30408 202 aa23.71■■□□□ 1.39
HDDC3-205ENST00000559898 KCNA3P22001 575 aa23.7■■□□□ 1.38
HDDC3-205ENST00000559898 BTBD11A6QL63 1104 aa23.69■■□□□ 1.38
HDDC3-205ENST00000559898 PIP4K2AP48426 406 aaPredicted RBP23.69■■□□□ 1.38
HDDC3-205ENST00000559898 DDX10Q13206 875 aaKnown RBP23.69■■□□□ 1.38
HDDC3-205ENST00000559898 A1BGP04217 495 aa23.68■■□□□ 1.38
HDDC3-205ENST00000559898 NFIXQ14938 502 aa23.68■■□□□ 1.38
HDDC3-205ENST00000559898 NARFQ9UHQ1 456 aa23.68■■□□□ 1.38
HDDC3-205ENST00000559898 ZPR1O75312 459 aa23.67■■□□□ 1.38
HDDC3-205ENST00000559898 EIF5P55010 431 aaKnown RBP23.67■■□□□ 1.38
HDDC3-205ENST00000559898 TGFB2P61812 414 aa23.67■■□□□ 1.38
HDDC3-205ENST00000559898 PLEKHF1Q96S99 279 aa23.67■■□□□ 1.38
HDDC3-205ENST00000559898 NRXN2Q9P2S2 1712 aa23.67■■□□□ 1.38
HDDC3-205ENST00000559898 CHRNA5P30532 468 aa23.66■■□□□ 1.38
HDDC3-205ENST00000559898 MIS18AQ9NYP9 233 aa23.66■■□□□ 1.38
HDDC3-205ENST00000559898 BCS1LQ9Y276 419 aa23.66■■□□□ 1.38
HDDC3-205ENST00000559898 USP16Q9Y5T5 823 aa23.66■■□□□ 1.38
HDDC3-205ENST00000559898 ATP10DQ9P241 1426 aa23.66■■□□□ 1.38
HDDC3-205ENST00000559898 FMNL2Q96PY5 1086 aa23.65■■□□□ 1.38
HDDC3-205ENST00000559898 SCN7AQ01118 1682 aa23.64■■□□□ 1.38
HDDC3-205ENST00000559898 ZNF330Q9Y3S2 320 aaPredicted RBP23.64■■□□□ 1.37
HDDC3-205ENST00000559898 ADCY9O60503 1353 aa23.64■■□□□ 1.37
HDDC3-205ENST00000559898 STARD3NLO95772 234 aa23.63■■□□□ 1.37
HDDC3-205ENST00000559898 BICDL1Q6ZP65 573 aa23.63■■□□□ 1.37
HDDC3-205ENST00000559898 THUMPD2Q9BTF0 503 aaKnown RBP23.63■■□□□ 1.37
HDDC3-205ENST00000559898 TBC1D2BQ9UPU7 963 aa23.63■■□□□ 1.37
HDDC3-205ENST00000559898 CARMIL3Q8ND23 1372 aa23.63■■□□□ 1.37
HDDC3-205ENST00000559898 RTF1Q92541 710 aaKnown RBP23.62■■□□□ 1.37
HDDC3-205ENST00000559898 ARFGEF1Q9Y6D6 1849 aa23.61■■□□□ 1.37
HDDC3-205ENST00000559898 ZNF526Q8TF50 670 aaPredicted RBP23.61■■□□□ 1.37
HDDC3-205ENST00000559898 ANKRD31Q8N7Z5 1873 aa23.6■■□□□ 1.37
HDDC3-205ENST00000559898 TBC1D9BQ66K14 1250 aa23.6■■□□□ 1.37
HDDC3-205ENST00000559898 BCORQ6W2J9 1755 aa23.6■■□□□ 1.37
HDDC3-205ENST00000559898 KDM3BQ7LBC6 1761 aa23.6■■□□□ 1.37
HDDC3-205ENST00000559898 SERPINB2P05120 415 aa23.59■■□□□ 1.37
HDDC3-205ENST00000559898 CCDC24Q8N4L8 307 aa23.59■■□□□ 1.37
HDDC3-205ENST00000559898 ARHGAP27Q6ZUM4 889 aa23.57■■□□□ 1.36
HDDC3-205ENST00000559898 TEX13AQ9BXU3 409 aaPredicted RBP23.57■■□□□ 1.36
HDDC3-205ENST00000559898 DLEC1Q9Y238 1755 aa23.56■■□□□ 1.36
HDDC3-205ENST00000559898 NBPF26B4DH59 902 aa23.56■■□□□ 1.36
HDDC3-205ENST00000559898 HTATSF1O43719 755 aaKnown RBP23.56■■□□□ 1.36
HDDC3-205ENST00000559898 CAMTA2O94983 1202 aa23.56■■□□□ 1.36
HDDC3-205ENST00000559898 IL6STP40189 918 aaPredicted RBP23.56■■□□□ 1.36
HDDC3-205ENST00000559898 C1QTNF8P60827 252 aa23.56■■□□□ 1.36
HDDC3-205ENST00000559898 NFE2L2Q16236 605 aa23.56■■□□□ 1.36
HDDC3-205ENST00000559898 NBPF10Q6P3W6 841 aaKnown RBP23.56■■□□□ 1.36
HDDC3-205ENST00000559898 NBPF15Q8N660 670 aa23.56■■□□□ 1.36
HDDC3-205ENST00000559898 TAF7Q15545 349 aaPredicted RBP23.55■■□□□ 1.36
HDDC3-205ENST00000559898 PIM2Q9P1W9 311 aa23.55■■□□□ 1.36
HDDC3-205ENST00000559898 COL11A2P13942 1736 aaPredicted RBP23.54■■□□□ 1.36
HDDC3-205ENST00000559898 GIGYF1O75420 1035 aaPredicted RBP23.54■■□□□ 1.36
HDDC3-205ENST00000559898 RALBP1Q15311 655 aa23.54■■□□□ 1.36
HDDC3-205ENST00000559898 LAMB4A4D0S4 1761 aa23.54■■□□□ 1.36
HDDC3-205ENST00000559898 A0A087WZG4 1122 aa23.53■■□□□ 1.36
HDDC3-205ENST00000559898 SNRPA1P09661 255 aaKnown RBP23.53■■□□□ 1.36
HDDC3-205ENST00000559898 DALRD3Q5D0E6 543 aaKnown RBP23.51■■□□□ 1.35
HDDC3-205ENST00000559898 DZIP3Q86Y13 1208 aaKnown RBP23.51■■□□□ 1.35
HDDC3-205ENST00000559898 SBF1O95248 1867 aa23.51■■□□□ 1.35
HDDC3-205ENST00000559898 CCDC146Q8IYE0 955 aa23.5■■□□□ 1.35
HDDC3-205ENST00000559898 PRR5LQ6MZQ0 368 aa23.49■■□□□ 1.35
HDDC3-205ENST00000559898 RRP7AQ9Y3A4 280 aaKnown RBP23.49■■□□□ 1.35
HDDC3-205ENST00000559898 MYBBP1AQ9BQG0 1328 aaKnown RBP23.49■■□□□ 1.35
HDDC3-205ENST00000559898 PRELPP51888 382 aa23.48■■□□□ 1.35
HDDC3-205ENST00000559898 EIF4A1P60842 406 aaKnown RBP23.48■■□□□ 1.35
HDDC3-205ENST00000559898 C2CD5Q86YS7 1000 aa23.48■■□□□ 1.35
HDDC3-205ENST00000559898 GPBP1L1Q9HC44 474 aaPredicted RBP23.48■■□□□ 1.35
HDDC3-205ENST00000559898 MAPK8IP3Q9UPT6 1336 aa23.48■■□□□ 1.35
HDDC3-205ENST00000559898 CACNA1SQ13698 1873 aa23.47■■□□□ 1.35
HDDC3-205ENST00000559898 RASSF7Q02833 373 aa23.47■■□□□ 1.35
HDDC3-205ENST00000559898 NEFMP07197 916 aa23.46■■□□□ 1.35
HDDC3-205ENST00000559898 RIPK4P57078 832 aa23.46■■□□□ 1.35
HDDC3-205ENST00000559898 C9orf131Q5VYM1 1079 aa23.46■■□□□ 1.35
HDDC3-205ENST00000559898 SENP3-EIF4A1A0A087X0R7 540 aa23.45■■□□□ 1.34
HDDC3-205ENST00000559898 HLFQ16534 295 aa23.45■■□□□ 1.34
HDDC3-205ENST00000559898 NGEFQ8N5V2 710 aa23.45■■□□□ 1.34
HDDC3-205ENST00000559898 TMPOP42166 694 aaKnown RBP23.44■■□□□ 1.34
HDDC3-205ENST00000559898 CCDC88AQ3V6T2 1871 aa23.44■■□□□ 1.34
HDDC3-205ENST00000559898 KIF3CO14782 793 aa23.43■■□□□ 1.34
HDDC3-205ENST00000559898 SETDB2Q96T68 719 aa23.43■■□□□ 1.34
HDDC3-205ENST00000559898 NEUROD2Q15784 382 aa23.42■■□□□ 1.34
HDDC3-205ENST00000559898 ZNF219Q9P2Y4 722 aaPredicted RBP23.42■■□□□ 1.34
HDDC3-205ENST00000559898 NUP98P52948 1817 aa23.42■■□□□ 1.34
HDDC3-205ENST00000559898 SLX4Q8IY92 1834 aa23.42■■□□□ 1.34
HDDC3-205ENST00000559898 H0YIN7 160 aa23.41■■□□□ 1.34
HDDC3-205ENST00000559898 TTLL7Q6ZT98 887 aa23.41■■□□□ 1.34
HDDC3-205ENST00000559898 PRKRIP1Q9H875 184 aaPredicted RBP23.41■■□□□ 1.34
HDDC3-205ENST00000559898 ADAMTS8Q9UP79 889 aa23.41■■□□□ 1.34
HDDC3-205ENST00000559898 FAM177BA6PVY3 158 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms