RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 RGS3P49796 1198 aa22.49■■□□□ 1.19
SNX1-208ENST00000559844 API5Q9BZZ5 524 aaKnown RBP22.49■■□□□ 1.19
SNX1-208ENST00000559844 PAPPAQ13219 1627 aa22.49■■□□□ 1.19
SNX1-208ENST00000559844 FAM161AQ3B820 660 aa22.49■■□□□ 1.19
SNX1-208ENST00000559844 HDAC1Q13547 482 aaPredicted RBP22.47■■□□□ 1.19
SNX1-208ENST00000559844 BCL11BQ9C0K0 894 aaPredicted RBP22.47■■□□□ 1.19
SNX1-208ENST00000559844 ZBTB40Q9NUA8 1239 aa22.47■■□□□ 1.19
SNX1-208ENST00000559844 TSPYL4Q9UJ04 414 aa22.47■■□□□ 1.19
SNX1-208ENST00000559844 TNS1Q9HBL0 1735 aaKnown RBP22.46■■□□□ 1.19
SNX1-208ENST00000559844 ABCC4O15439 1325 aa22.46■■□□□ 1.19
SNX1-208ENST00000559844 SLC39A6Q13433 755 aa22.46■■□□□ 1.19
SNX1-208ENST00000559844 UBR2Q8IWV8 1755 aa22.45■■□□□ 1.18
SNX1-208ENST00000559844 ASAP1Q9ULH1 1129 aa22.45■■□□□ 1.18
SNX1-208ENST00000559844 MSH5O43196 834 aa22.45■■□□□ 1.18
SNX1-208ENST00000559844 BABAM1Q9NWV8 329 aa22.44■■□□□ 1.18
SNX1-208ENST00000559844 KCNQ3O43525 872 aa22.43■■□□□ 1.18
SNX1-208ENST00000559844 ZNF790Q6PG37 636 aa22.43■■□□□ 1.18
SNX1-208ENST00000559844 ATG3Q9NT62 314 aa22.43■■□□□ 1.18
SNX1-208ENST00000559844 TTC5Q8N0Z6 440 aa22.43■■□□□ 1.18
SNX1-208ENST00000559844 ILDR2Q71H61 639 aa22.42■■□□□ 1.18
SNX1-208ENST00000559844 PDZRN3Q9UPQ7 1066 aa22.41■■□□□ 1.18
SNX1-208ENST00000559844 IPO9Q96P70 1041 aaKnown RBP22.41■■□□□ 1.18
SNX1-208ENST00000559844 ZBTB7BO15156 539 aaPredicted RBP22.4■■□□□ 1.18
SNX1-208ENST00000559844 C8orf34Q49A92 452 aa22.4■■□□□ 1.18
SNX1-208ENST00000559844 SOS1Q07889 1333 aaPredicted RBP22.4■■□□□ 1.18
SNX1-208ENST00000559844 PALLDQ8WX93 1383 aa22.4■■□□□ 1.18
SNX1-208ENST00000559844 KCPQ6ZWJ8 1503 aa22.4■■□□□ 1.18
SNX1-208ENST00000559844 PTPRCP08575 1304 aa22.39■■□□□ 1.18
SNX1-208ENST00000559844 LY75O60449 1722 aa22.39■■□□□ 1.18
SNX1-208ENST00000559844 PTCD1O75127 700 aaKnown RBP22.39■■□□□ 1.17
SNX1-208ENST00000559844 ERICH6Q7L0X2 663 aa22.39■■□□□ 1.17
SNX1-208ENST00000559844 SMARCC1Q92922 1105 aaPredicted RBP22.39■■□□□ 1.17
SNX1-208ENST00000559844 KRT24Q2M2I5 525 aa22.38■■□□□ 1.17
SNX1-208ENST00000559844 ZNF496Q96IT1 587 aaPredicted RBP22.38■■□□□ 1.17
SNX1-208ENST00000559844 APBA3O96018 575 aa22.38■■□□□ 1.17
SNX1-208ENST00000559844 RBM42Q9BTD8 480 aaKnown RBP22.37■■□□□ 1.17
SNX1-208ENST00000559844 EIF4A1P60842 406 aaKnown RBP22.36■■□□□ 1.17
SNX1-208ENST00000559844 SMC5Q8IY18 1101 aa22.36■■□□□ 1.17
SNX1-208ENST00000559844 C5P01031 1676 aa22.36■■□□□ 1.17
SNX1-208ENST00000559844 FMNL2Q96PY5 1086 aa22.36■■□□□ 1.17
SNX1-208ENST00000559844 SF3B2Q13435 895 aaKnown RBP22.35■■□□□ 1.17
SNX1-208ENST00000559844 INTS3Q68E01 1043 aaKnown RBP22.35■■□□□ 1.17
SNX1-208ENST00000559844 NPM2Q86SE8 214 aaKnown RBP22.35■■□□□ 1.17
SNX1-208ENST00000559844 RGPD3A6NKT7 1758 aaPredicted RBP22.34■■□□□ 1.17
SNX1-208ENST00000559844 RGPD4Q7Z3J3 1758 aa22.34■■□□□ 1.17
SNX1-208ENST00000559844 HEG1Q9ULI3 1381 aa22.33■■□□□ 1.17
SNX1-208ENST00000559844 LOC102724428A0A0B4J2F2 783 aa22.33■■□□□ 1.17
SNX1-208ENST00000559844 SIK1P57059 783 aa22.33■■□□□ 1.17
SNX1-208ENST00000559844 TJP1Q07157 1748 aa22.33■■□□□ 1.16
SNX1-208ENST00000559844 ZNF831Q5JPB2 1677 aa22.32■■□□□ 1.16
SNX1-208ENST00000559844 NOP58Q9Y2X3 529 aaKnown RBP22.32■■□□□ 1.16
SNX1-208ENST00000559844 LAMB4A4D0S4 1761 aa22.32■■□□□ 1.16
SNX1-208ENST00000559844 ANP32EQ9BTT0 268 aa22.32■■□□□ 1.16
SNX1-208ENST00000559844 PLSCR1O15162 318 aa22.31■■□□□ 1.16
SNX1-208ENST00000559844 SLC4A2P04920 1241 aa22.31■■□□□ 1.16
SNX1-208ENST00000559844 CCDC125Q86Z20 511 aa22.31■■□□□ 1.16
SNX1-208ENST00000559844 SLC4A9Q96Q91 983 aa22.31■■□□□ 1.16
SNX1-208ENST00000559844 STK31Q9BXU1 1019 aa22.31■■□□□ 1.16
SNX1-208ENST00000559844 TAF1LQ8IZX4 1826 aa22.31■■□□□ 1.16
SNX1-208ENST00000559844 ATP6V1AP38606 617 aa22.3■■□□□ 1.16
SNX1-208ENST00000559844 PRAMEF22A3QJZ6 481 aa22.3■■□□□ 1.16
SNX1-208ENST00000559844 GIGYF1O75420 1035 aaPredicted RBP22.3■■□□□ 1.16
SNX1-208ENST00000559844 SNRPA1P09661 255 aaKnown RBP22.3■■□□□ 1.16
SNX1-208ENST00000559844 KCNQ4P56696 695 aa22.3■■□□□ 1.16
SNX1-208ENST00000559844 CCDC30Q5VVM6 783 aa22.3■■□□□ 1.16
SNX1-208ENST00000559844 GCC1Q96CN9 775 aa22.3■■□□□ 1.16
SNX1-208ENST00000559844 DDRGK1Q96HY6 314 aa22.3■■□□□ 1.16
SNX1-208ENST00000559844 ZBTB47Q9UFB7 747 aaPredicted RBP22.3■■□□□ 1.16
SNX1-208ENST00000559844 CCNL1Q9UK58 526 aaPredicted RBP22.3■■□□□ 1.16
SNX1-208ENST00000559844 CICQ96RK0 1608 aaPredicted RBP22.3■■□□□ 1.16
SNX1-208ENST00000559844 VSIG10Q8N0Z9 540 aa22.29■■□□□ 1.16
SNX1-208ENST00000559844 BAG6P46379 1132 aa22.29■■□□□ 1.16
SNX1-208ENST00000559844 UPF1Q92900 1129 aaKnown RBP eCLIP22.29■■□□□ 1.16
SNX1-208ENST00000559844 COL5A3P25940 1745 aaPredicted RBP22.28■■□□□ 1.16
SNX1-208ENST00000559844 EN1Q05925 392 aaPredicted RBP22.28■■□□□ 1.16
SNX1-208ENST00000559844 DEFB132Q7Z7B7 95 aa22.27■■□□□ 1.16
SNX1-208ENST00000559844 DNAJC10Q8IXB1 793 aa22.27■■□□□ 1.16
SNX1-208ENST00000559844 CHMP4AQ9BY43 222 aa22.27■■□□□ 1.16
SNX1-208ENST00000559844 NUCB1Q02818 461 aa22.27■■□□□ 1.15
SNX1-208ENST00000559844 ITPK1Q13572 414 aa22.27■■□□□ 1.15
SNX1-208ENST00000559844 TXNRD1Q16881 649 aa22.27■■□□□ 1.15
SNX1-208ENST00000559844 SLC27A3Q5K4L6 730 aa22.25■■□□□ 1.15
SNX1-208ENST00000559844 PROM2Q8N271 834 aa22.25■■□□□ 1.15
SNX1-208ENST00000559844 USP16Q9Y5T5 823 aa22.25■■□□□ 1.15
SNX1-208ENST00000559844 HOXB7P09629 217 aa22.25■■□□□ 1.15
SNX1-208ENST00000559844 EZH2Q15910 746 aaKnown RBP22.25■■□□□ 1.15
SNX1-208ENST00000559844 CAMKK2Q96RR4 588 aa22.25■■□□□ 1.15
SNX1-208ENST00000559844 LRRC4BQ9NT99 713 aa22.25■■□□□ 1.15
SNX1-208ENST00000559844 EIF2S2P20042 333 aaKnown RBP22.24■■□□□ 1.15
SNX1-208ENST00000559844 CCT4P50991 539 aaKnown RBP22.24■■□□□ 1.15
SNX1-208ENST00000559844 TEX13AQ9BXU3 409 aaPredicted RBP22.24■■□□□ 1.15
SNX1-208ENST00000559844 C1orf115Q9H7X2 142 aa22.24■■□□□ 1.15
SNX1-208ENST00000559844 RREB1Q92766 1687 aa22.24■■□□□ 1.15
SNX1-208ENST00000559844 MYH14Q7Z406 1995 aaKnown RBP22.23■■□□□ 1.15
SNX1-208ENST00000559844 NECTIN2Q92692 538 aa22.23■■□□□ 1.15
SNX1-208ENST00000559844 HDGFL1Q5TGJ6 251 aa22.23■■□□□ 1.15
SNX1-208ENST00000559844 STARD3NLO95772 234 aa22.22■■□□□ 1.15
SNX1-208ENST00000559844 CHD1LQ86WJ1 897 aa22.22■■□□□ 1.15
SNX1-208ENST00000559844 LINC00116Q8NCU8 138 aa22.22■■□□□ 1.15
SNX1-208ENST00000559844 CACNA1FO60840 1977 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms