RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 SMC4Q9NTJ3 1288 aa15.88■□□□□ 0.13
TPM1-209ENST00000558072 RGPD3A6NKT7 1758 aaPredicted RBP15.87■□□□□ 0.13
TPM1-209ENST00000558072 RGPD4Q7Z3J3 1758 aa15.87■□□□□ 0.13
TPM1-209ENST00000558072 TCERG1O14776 1098 aaKnown RBP15.87■□□□□ 0.13
TPM1-209ENST00000558072 STARD3NLO95772 234 aa15.87■□□□□ 0.13
TPM1-209ENST00000558072 HDGFL1Q5TGJ6 251 aa15.87■□□□□ 0.13
TPM1-209ENST00000558072 SMIM5Q71RC9 77 aa15.87■□□□□ 0.13
TPM1-209ENST00000558072 DNAJC10Q8IXB1 793 aa15.87■□□□□ 0.13
TPM1-209ENST00000558072 LRRC4BQ9NT99 713 aa15.87■□□□□ 0.13
TPM1-209ENST00000558072 CICQ96RK0 1608 aaPredicted RBP15.86■□□□□ 0.13
TPM1-209ENST00000558072 LOC102724428A0A0B4J2F2 783 aa15.86■□□□□ 0.13
TPM1-209ENST00000558072 CANXP27824 592 aaKnown RBP15.86■□□□□ 0.13
TPM1-209ENST00000558072 SIK1P57059 783 aa15.86■□□□□ 0.13
TPM1-209ENST00000558072 PROM2Q8N271 834 aa15.86■□□□□ 0.13
TPM1-209ENST00000558072 DBF4Q9UBU7 674 aaPredicted RBP15.86■□□□□ 0.13
TPM1-209ENST00000558072 TUBGCP6Q96RT7 1819 aa15.86■□□□□ 0.13
TPM1-209ENST00000558072 LINC00116Q8NCU8 138 aa15.85■□□□□ 0.13
TPM1-209ENST00000558072 ARHGAP45Q92619 1136 aa15.85■□□□□ 0.13
TPM1-209ENST00000558072 CCNL1Q9UK58 526 aaPredicted RBP15.85■□□□□ 0.13
TPM1-209ENST00000558072 C4BP0C0L5 1744 aa15.85■□□□□ 0.13
TPM1-209ENST00000558072 ATP6V1AP38606 617 aa15.84■□□□□ 0.13
TPM1-209ENST00000558072 TXNRD1Q16881 649 aa15.84■□□□□ 0.13
TPM1-209ENST00000558072 HYPKQ9NX55 129 aa15.84■□□□□ 0.13
TPM1-209ENST00000558072 SUPT16HQ9Y5B9 1047 aaKnown RBP15.84■□□□□ 0.13
TPM1-209ENST00000558072 CACNA1FO60840 1977 aa15.84■□□□□ 0.13
TPM1-209ENST00000558072 ZNF831Q5JPB2 1677 aa15.83■□□□□ 0.13
TPM1-209ENST00000558072 ANXA1P04083 346 aa15.83■□□□□ 0.12
TPM1-209ENST00000558072 NPM2Q86SE8 214 aaKnown RBP15.83■□□□□ 0.12
TPM1-209ENST00000558072 SSH1Q8WYL5 1049 aa15.83■□□□□ 0.12
TPM1-209ENST00000558072 CAMKK2Q96RR4 588 aa15.83■□□□□ 0.12
TPM1-209ENST00000558072 USP16Q9Y5T5 823 aa15.83■□□□□ 0.12
TPM1-209ENST00000558072 MYH14Q7Z406 1995 aaKnown RBP15.83■□□□□ 0.12
TPM1-209ENST00000558072 PTPRCP08575 1304 aa15.83■□□□□ 0.12
TPM1-209ENST00000558072 RNF123Q5XPI4 1314 aa15.83■□□□□ 0.12
TPM1-209ENST00000558072 SLC4A2P04920 1241 aa15.82■□□□□ 0.12
TPM1-209ENST00000558072 EIF2S2P20042 333 aaKnown RBP15.82■□□□□ 0.12
TPM1-209ENST00000558072 RRP1P56182 461 aaKnown RBP15.82■□□□□ 0.12
TPM1-209ENST00000558072 SF3B2Q13435 895 aaKnown RBP15.82■□□□□ 0.12
TPM1-209ENST00000558072 ZKSCAN2Q63HK3 967 aa15.82■□□□□ 0.12
TPM1-209ENST00000558072 AMIGO3Q86WK7 504 aa15.82■□□□□ 0.12
TPM1-209ENST00000558072 API5Q9BZZ5 524 aaKnown RBP15.82■□□□□ 0.12
TPM1-209ENST00000558072 DDX21Q9NR30 783 aaKnown RBP eCLIP15.82■□□□□ 0.12
TPM1-209ENST00000558072 DDX58O95786 925 aaKnown RBP15.81■□□□□ 0.12
TPM1-209ENST00000558072 BAG6P46379 1132 aa15.81■□□□□ 0.12
TPM1-209ENST00000558072 PDE3AQ14432 1141 aa15.81■□□□□ 0.12
TPM1-209ENST00000558072 PROSER3Q2NL68 480 aa15.81■□□□□ 0.12
TPM1-209ENST00000558072 SLC27A3Q5K4L6 730 aa15.81■□□□□ 0.12
TPM1-209ENST00000558072 MRPL50Q8N5N7 158 aaKnown RBP15.81■□□□□ 0.12
TPM1-209ENST00000558072 CHMP4BQ9H444 224 aaKnown RBP15.81■□□□□ 0.12
TPM1-209ENST00000558072 ANO8Q9HCE9 1232 aaPredicted RBP15.81■□□□□ 0.12
TPM1-209ENST00000558072 ZNF827Q17R98 1081 aa15.8■□□□□ 0.12
TPM1-209ENST00000558072 ERICH6BQ5W0A0 696 aa15.8■□□□□ 0.12
TPM1-209ENST00000558072 CCDC125Q86Z20 511 aa15.8■□□□□ 0.12
TPM1-209ENST00000558072 BCL2L13Q9BXK5 485 aa15.8■□□□□ 0.12
TPM1-209ENST00000558072 PLSCR1O15162 318 aa15.79■□□□□ 0.12
TPM1-209ENST00000558072 BCAR3O75815 825 aa15.79■□□□□ 0.12
TPM1-209ENST00000558072 A1BGP04217 495 aa15.79■□□□□ 0.12
TPM1-209ENST00000558072 FRAT1Q92837 279 aaPredicted RBP15.79■□□□□ 0.12
TPM1-209ENST00000558072 ZBTB1Q9Y2K1 713 aa15.79■□□□□ 0.12
TPM1-209ENST00000558072 UBR3Q6ZT12 1888 aa15.78■□□□□ 0.12
TPM1-209ENST00000558072 CYP19A1P11511 503 aaPredicted RBP15.78■□□□□ 0.12
TPM1-209ENST00000558072 CRKLP46109 303 aaKnown RBP15.78■□□□□ 0.12
TPM1-209ENST00000558072 ATF7IPQ6VMQ6 1270 aa15.78■□□□□ 0.12
TPM1-209ENST00000558072 FTSJ3Q8IY81 847 aaKnown RBP15.78■□□□□ 0.12
TPM1-209ENST00000558072 C4AP0C0L4 1744 aa15.77■□□□□ 0.12
TPM1-209ENST00000558072 NBPF26B4DH59 902 aa15.77■□□□□ 0.12
TPM1-209ENST00000558072 AAMPQ13685 434 aa15.77■□□□□ 0.12
TPM1-209ENST00000558072 NBPF14Q5TI25 921 aa15.77■□□□□ 0.12
TPM1-209ENST00000558072 NBPF10Q6P3W6 841 aaKnown RBP15.77■□□□□ 0.12
TPM1-209ENST00000558072 NBPF15Q8N660 670 aa15.77■□□□□ 0.12
TPM1-209ENST00000558072 CHPF2Q9P2E5 772 aa15.77■□□□□ 0.12
TPM1-209ENST00000558072 NOB1Q9ULX3 412 aaKnown RBP15.77■□□□□ 0.12
TPM1-209ENST00000558072 ZNF330Q9Y3S2 320 aaPredicted RBP15.77■□□□□ 0.12
TPM1-209ENST00000558072 MYL6BP14649 208 aa15.76■□□□□ 0.11
TPM1-209ENST00000558072 FLIIQ13045 1269 aa15.76■□□□□ 0.11
TPM1-209ENST00000558072 RC3H1Q5TC82 1133 aaKnown RBP15.76■□□□□ 0.11
TPM1-209ENST00000558072 INTS5Q6P9B9 1019 aaKnown RBP15.76■□□□□ 0.11
TPM1-209ENST00000558072 PHF14O94880 888 aa15.75■□□□□ 0.11
TPM1-209ENST00000558072 DZIP1LQ8IYY4 767 aaKnown RBP15.75■□□□□ 0.11
TPM1-209ENST00000558072 A0A087WZG4 1122 aa15.74■□□□□ 0.11
TPM1-209ENST00000558072 GNPATO15228 680 aa15.74■□□□□ 0.11
TPM1-209ENST00000558072 IL6STP40189 918 aaPredicted RBP15.74■□□□□ 0.11
TPM1-209ENST00000558072 FKBP5Q13451 457 aaPredicted RBP15.74■□□□□ 0.11
TPM1-209ENST00000558072 PDIA6Q15084 440 aa15.74■□□□□ 0.11
TPM1-209ENST00000558072 G2E3Q7L622 706 aa15.74■□□□□ 0.11
TPM1-209ENST00000558072 CCDC87Q9NVE4 849 aa15.74■□□□□ 0.11
TPM1-209ENST00000558072 CNTNAP4Q9C0A0 1308 aa15.73■□□□□ 0.11
TPM1-209ENST00000558072 RGL2O15211 777 aa15.72■□□□□ 0.11
TPM1-209ENST00000558072 CCT4P50991 539 aaKnown RBP15.72■□□□□ 0.11
TPM1-209ENST00000558072 KSR2Q6VAB6 950 aa15.72■□□□□ 0.11
TPM1-209ENST00000558072 AKT1S1Q96B36 256 aa15.72■□□□□ 0.11
TPM1-209ENST00000558072 AK7Q96M32 723 aa15.72■□□□□ 0.11
TPM1-209ENST00000558072 PHAXQ9H814 394 aaKnown RBP15.72■□□□□ 0.11
TPM1-209ENST00000558072 HDAC5Q9UQL6 1122 aa15.72■□□□□ 0.11
TPM1-209ENST00000558072 TNNQ9UQP3 1299 aa15.72■□□□□ 0.11
TPM1-209ENST00000558072 BCORQ6W2J9 1755 aa15.72■□□□□ 0.11
TPM1-209ENST00000558072 SCN7AQ01118 1682 aa15.71■□□□□ 0.11
TPM1-209ENST00000558072 TRIM27P14373 513 aa15.71■□□□□ 0.11
TPM1-209ENST00000558072 NEXNQ0ZGT2 675 aa15.71■□□□□ 0.11
TPM1-209ENST00000558072 KIF6Q6ZMV9 814 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms