RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PRELPP51888 382 aa11.27□□□□□ -0.61
CCDC88C-214ENST00000557507 INTS5Q6P9B9 1019 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-214ENST00000557507 NFATC2IPQ8NCF5 419 aa11.27□□□□□ -0.61
CCDC88C-214ENST00000557507 CARMIL3Q8ND23 1372 aa11.27□□□□□ -0.61
CCDC88C-214ENST00000557507 TM4SF1P30408 202 aa11.26□□□□□ -0.61
CCDC88C-214ENST00000557507 MTHFSP49914 203 aa11.26□□□□□ -0.61
CCDC88C-214ENST00000557507 AMOTQ4VCS5 1084 aa11.26□□□□□ -0.61
CCDC88C-214ENST00000557507 USPL1Q5W0Q7 1092 aa11.26□□□□□ -0.61
CCDC88C-214ENST00000557507 SMC1BQ8NDV3 1235 aa11.26□□□□□ -0.61
CCDC88C-214ENST00000557507 SOS1Q07889 1333 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-214ENST00000557507 SLX4Q8IY92 1834 aa11.25□□□□□ -0.61
CCDC88C-214ENST00000557507 C1orf141Q5JVX7 400 aa11.25□□□□□ -0.61
CCDC88C-214ENST00000557507 DNAJC10Q8IXB1 793 aa11.25□□□□□ -0.61
CCDC88C-214ENST00000557507 TNS4Q8IZW8 715 aa11.25□□□□□ -0.61
CCDC88C-214ENST00000557507 POLR3GLQ9BT43 218 aa11.25□□□□□ -0.61
CCDC88C-214ENST00000557507 ZC3H4Q9UPT8 1303 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-214ENST00000557507 COL15A1P39059 1388 aa11.25□□□□□ -0.61
CCDC88C-214ENST00000557507 NFIXQ14938 502 aa11.24□□□□□ -0.61
CCDC88C-214ENST00000557507 PCGF6Q9BYE7 350 aa11.24□□□□□ -0.61
CCDC88C-214ENST00000557507 SULT6B1Q6IMI4 303 aa11.23□□□□□ -0.61
CCDC88C-214ENST00000557507 GLTPD2A6NH11 291 aa11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 NFKBIEO00221 500 aa11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 ZPR1O75312 459 aa11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 HSPA1AP0DMV8 641 aaKnown RBP11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 HSPA1BP0DMV9 641 aaKnown RBP11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 LMNB1P20700 586 aa11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 SCN4AP35499 1836 aa11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 BCL2L12Q9HB09 334 aa11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 ZBTB1Q9Y2K1 713 aa11.22□□□□□ -0.61
CCDC88C-214ENST00000557507 CYP19A1P11511 503 aaPredicted RBP11.21□□□□□ -0.61
CCDC88C-214ENST00000557507 SLC39A6Q13433 755 aa11.21□□□□□ -0.61
CCDC88C-214ENST00000557507 PANK3Q9H999 370 aa11.21□□□□□ -0.61
CCDC88C-214ENST00000557507 SLC52A2Q9HAB3 445 aa11.21□□□□□ -0.61
CCDC88C-214ENST00000557507 NARFQ9UHQ1 456 aa11.21□□□□□ -0.61
CCDC88C-214ENST00000557507 POTECB2RU33 542 aa11.2□□□□□ -0.62
CCDC88C-214ENST00000557507 SERPINB2P05120 415 aa11.2□□□□□ -0.62
CCDC88C-214ENST00000557507 VEGFAP15692 232 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-214ENST00000557507 IL13P35225 146 aa11.2□□□□□ -0.62
CCDC88C-214ENST00000557507 LGR6Q9HBX8 967 aa11.2□□□□□ -0.62
CCDC88C-214ENST00000557507 AKAP4Q5JQC9 854 aa11.19□□□□□ -0.62
CCDC88C-214ENST00000557507 C2CD5Q86YS7 1000 aa11.19□□□□□ -0.62
CCDC88C-214ENST00000557507 TTLL6Q8N841 843 aa11.19□□□□□ -0.62
CCDC88C-214ENST00000557507 ADAMTSL1Q8N6G6 1762 aa11.18□□□□□ -0.62
CCDC88C-214ENST00000557507 RNMTO43148 476 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-214ENST00000557507 MORC1Q86VD1 984 aa11.18□□□□□ -0.62
CCDC88C-214ENST00000557507 H0YIN7 160 aa11.16□□□□□ -0.62
CCDC88C-214ENST00000557507 HSPA5P11021 654 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-214ENST00000557507 CANXP27824 592 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-214ENST00000557507 BICDL1Q6ZP65 573 aa11.16□□□□□ -0.62
CCDC88C-214ENST00000557507 C21orf2O43822 256 aa11.15□□□□□ -0.62
CCDC88C-214ENST00000557507 HMOX1P09601 288 aa11.15□□□□□ -0.62
CCDC88C-214ENST00000557507 POTEIP0CG38 1075 aa11.15□□□□□ -0.62
CCDC88C-214ENST00000557507 POTEJP0CG39 1038 aa11.15□□□□□ -0.62
CCDC88C-214ENST00000557507 TBC1D9BQ66K14 1250 aa11.15□□□□□ -0.62
CCDC88C-214ENST00000557507 CCDC24Q8N4L8 307 aa11.15□□□□□ -0.62
CCDC88C-214ENST00000557507 ZNF219Q9P2Y4 722 aaPredicted RBP11.15□□□□□ -0.62
CCDC88C-214ENST00000557507 TRPM7Q96QT4 1865 aa11.15□□□□□ -0.63
CCDC88C-214ENST00000557507 COL3A1P02461 1466 aaPredicted RBP11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 LAMB4A4D0S4 1761 aa11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 EIF5P55010 431 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 MTHFSDQ2M296 383 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 ERFEQ4G0M1 354 aa11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 PRR5LQ6MZQ0 368 aa11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 VSIG10Q8N0Z9 540 aa11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 ZNF622Q969S3 477 aaKnown RBP eCLIP11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 MKRN1Q9UHC7 482 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 TIMELESSQ9UNS1 1208 aa11.14□□□□□ -0.63
CCDC88C-214ENST00000557507 LTBP3Q9NS15 1303 aa11.13□□□□□ -0.63
CCDC88C-214ENST00000557507 EIF4G2P78344 907 aaKnown RBP eCLIP11.13□□□□□ -0.63
CCDC88C-214ENST00000557507 CREBZFQ9NS37 354 aa11.13□□□□□ -0.63
CCDC88C-214ENST00000557507 NUP98P52948 1817 aa11.13□□□□□ -0.63
CCDC88C-214ENST00000557507 DDNO94850 711 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 AMER1Q5JTC6 1135 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 CHADLQ6NUI6 762 aa11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 DPY19L2Q6NUT2 758 aa11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 ZNF496Q96IT1 587 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 BRIP1Q9BX63 1249 aa11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 TAOK3Q9H2K8 898 aa11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 CNTNAP1P78357 1384 aa11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 THSD7BQ9C0I4 1608 aa11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 HEG1Q9ULI3 1381 aa11.12□□□□□ -0.63
CCDC88C-214ENST00000557507 DLG5Q8TDM6 1919 aa11.11□□□□□ -0.63
CCDC88C-214ENST00000557507 A0A087WZG4 1122 aa11.11□□□□□ -0.63
CCDC88C-214ENST00000557507 FOXN1O15353 648 aa11.11□□□□□ -0.63
CCDC88C-214ENST00000557507 PDE6BP35913 854 aa11.11□□□□□ -0.63
CCDC88C-214ENST00000557507 TBC1D2BQ9UPU7 963 aa11.11□□□□□ -0.63
CCDC88C-214ENST00000557507 ZNF330Q9Y3S2 320 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-214ENST00000557507 KNSTRNQ9Y448 316 aa11.11□□□□□ -0.63
CCDC88C-214ENST00000557507 LTBP1Q14766 1721 aa11.11□□□□□ -0.63
CCDC88C-214ENST00000557507 PASKQ96RG2 1323 aa11.1□□□□□ -0.63
CCDC88C-214ENST00000557507 STARD3NLO95772 234 aa11.1□□□□□ -0.63
CCDC88C-214ENST00000557507 PRPF40BQ6NWY9 871 aaKnown RBP11.1□□□□□ -0.63
CCDC88C-214ENST00000557507 TTC5Q8N0Z6 440 aa11.1□□□□□ -0.63
CCDC88C-214ENST00000557507 PDZRN3Q9UPQ7 1066 aa11.1□□□□□ -0.63
CCDC88C-214ENST00000557507 CAMTA2O94983 1202 aa11.09□□□□□ -0.63
CCDC88C-214ENST00000557507 SRGNP10124 158 aa11.09□□□□□ -0.63
CCDC88C-214ENST00000557507 ZNF790Q6PG37 636 aa11.09□□□□□ -0.63
CCDC88C-214ENST00000557507 CNBD1Q8NA66 436 aa11.09□□□□□ -0.63
CCDC88C-214ENST00000557507 ZNF541Q9H0D2 1346 aa11.09□□□□□ -0.63
CCDC88C-214ENST00000557507 A1BGP04217 495 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms