RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 CEP57L1Q8IYX8 460 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 ZRANB1Q9UGI0 708 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 A0A1W2PP64 1363 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 ZBTB7BO15156 539 aaPredicted RBP5.86□□□□□ -1.47
SYNE2-223ENST00000557005 KRT24Q2M2I5 525 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 HS1BP3Q53T59 392 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 BBXQ8WY36 941 aaPredicted RBP5.86□□□□□ -1.47
SYNE2-223ENST00000557005 CCDC102AQ96A19 550 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 CCDC8Q9H0W5 538 aaPredicted RBP5.86□□□□□ -1.47
SYNE2-223ENST00000557005 C14orf93Q9H972 538 aaKnown RBP5.86□□□□□ -1.47
SYNE2-223ENST00000557005 TRIM35Q9UPQ4 493 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 SHROOM2Q13796 1616 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 ARHGEF5Q12774 1597 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 TRAPPC8Q9Y2L5 1435 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 GSPT1P15170 499 aaKnown RBP5.86□□□□□ -1.47
SYNE2-223ENST00000557005 ATP2B1P20020 1258 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 SNW1Q13573 536 aaKnown RBP5.86□□□□□ -1.47
SYNE2-223ENST00000557005 DNAJC25Q9H1X3 360 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 BIN1O00499 593 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 PDE1AP54750 535 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 AK2P54819 239 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 ZNF445P59923 1031 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 CCT2P78371 535 aaKnown RBP5.86□□□□□ -1.47
SYNE2-223ENST00000557005 TRDNQ13061 729 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 CCDC186Q7Z3E2 898 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 CHMP4CQ96CF2 233 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 BOLA2Q9H3K6 86 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 CFAP45Q9UL16 551 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 PLXNC1O60486 1568 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 USP19O94966 1318 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 RALYLQ86SE5 291 aaKnown RBP5.85□□□□□ -1.47
SYNE2-223ENST00000557005 LUZP1Q86V48 1076 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 RAB11FIP4Q86YS3 637 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 PAXBP1Q9Y5B6 917 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 ADCY10Q96PN6 1610 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 ERICH2A1L162 156 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 CPA1P15085 419 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 MYRIPQ8NFW9 859 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 NUDT16Q96DE0 195 aaKnown RBP5.85□□□□□ -1.47
SYNE2-223ENST00000557005 SMTNL1A8MU46 457 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 TRMT2AQ8IZ69 625 aaKnown RBP5.85□□□□□ -1.47
SYNE2-223ENST00000557005 FANCAO15360 1455 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 URI1O94763 535 aaPredicted RBP5.85□□□□□ -1.47
SYNE2-223ENST00000557005 NLRP6P59044 892 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 PSME1Q06323 249 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 ANKRD20A12PQ8NF67 263 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 KIF18AQ8NI77 898 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 TRIM34Q9BYJ4 488 aa5.85□□□□□ -1.47
SYNE2-223ENST00000557005 RRP12Q5JTH9 1297 aaKnown RBP5.84□□□□□ -1.47
SYNE2-223ENST00000557005 PPFIBP1Q86W92 1011 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 ABTB2Q8N961 1025 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 ERCC4Q92889 916 aaPredicted RBP5.84□□□□□ -1.47
SYNE2-223ENST00000557005 SMARCE1Q969G3 411 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 SH2B1Q9NRF2 756 aaPredicted RBP5.84□□□□□ -1.47
SYNE2-223ENST00000557005 OGFRQ9NZT2 677 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 TMEM63CQ9P1W3 806 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 PPIP5K1Q6PFW1 1433 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 AXDND1Q5T1B0 1012 aaPredicted RBP5.84□□□□□ -1.47
SYNE2-223ENST00000557005 VPS53Q5VIR6 699 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 FSIP1Q8NA03 581 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 JARID2Q92833 1246 aaPredicted RBP5.84□□□□□ -1.47
SYNE2-223ENST00000557005 PPP1R9BQ96SB3 815 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 ANO10Q9NW15 660 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 ANKRD44Q8N8A2 993 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 KIF1BPQ96EK5 621 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 MTMR7Q9Y216 660 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 E9PCH4 1651 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 TARBP1Q13395 1621 aaKnown RBP5.84□□□□□ -1.47
SYNE2-223ENST00000557005 TTC37Q6PGP7 1564 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 TYRO3Q06418 890 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 SAFBQ15424 915 aaKnown RBP eCLIP5.84□□□□□ -1.47
SYNE2-223ENST00000557005 CFAP100Q494V2 611 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 KRT222Q8N1A0 295 aa5.84□□□□□ -1.47
SYNE2-223ENST00000557005 CCDC171Q6TFL3 1326 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 RIMS2Q9UQ26 1411 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 VGLL3A8MV65 326 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 VAMP4O75379 141 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 AOPEPQ8N6M6 819 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 GTF3C6Q969F1 213 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 PHACTR3Q96KR7 559 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 TIGD1Q96MW7 591 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 CALCOCO1Q9P1Z2 691 aa5.84□□□□□ -1.48
SYNE2-223ENST00000557005 UGGT1Q9NYU2 1555 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 UBXN4Q92575 508 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 ARHGAP45Q92619 1136 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 TCEANC2Q96MN5 208 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 LRRC2Q9BYS8 371 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 CFAP74Q9C0B2 1584 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 LIG1P18858 919 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 IBSPP21815 317 aaPredicted RBP5.83□□□□□ -1.48
SYNE2-223ENST00000557005 FKBP4Q02790 459 aaKnown RBP eCLIP5.83□□□□□ -1.48
SYNE2-223ENST00000557005 FLIIQ13045 1269 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 GPATCH11Q8N954 259 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 DDX19AQ9NUU7 478 aaKnown RBP5.83□□□□□ -1.48
SYNE2-223ENST00000557005 PREX2Q70Z35 1606 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 ZNF518AQ6AHZ1 1483 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 CCDC69A6NI79 296 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 H0YHG0 523 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 RAPGEF3O95398 923 aa5.83□□□□□ -1.48
SYNE2-223ENST00000557005 LMAN1P49257 510 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms