RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 RFC4P35249 363 aa13.75□□□□□ -0.21
SHMT2-224ENST00000556737 DCTN1Q14203 1278 aa13.75□□□□□ -0.21
SHMT2-224ENST00000556737 TTC5Q8N0Z6 440 aa13.75□□□□□ -0.21
SHMT2-224ENST00000556737 HTATSF1O43719 755 aaKnown RBP13.74□□□□□ -0.21
SHMT2-224ENST00000556737 YBX3P16989 372 aaKnown RBP eCLIP13.74□□□□□ -0.219e-9■□□□□ 9.1
SHMT2-224ENST00000556737 YY1P25490 414 aa13.74□□□□□ -0.21
SHMT2-224ENST00000556737 NLGN1Q8N2Q7 840 aa13.74□□□□□ -0.21
SHMT2-224ENST00000556737 AFDNP55196 1824 aaKnown RBP13.74□□□□□ -0.21
SHMT2-224ENST00000556737 BTBD11A6QL63 1104 aa13.73□□□□□ -0.21
SHMT2-224ENST00000556737 FKBP8Q14318 412 aa13.73□□□□□ -0.21
SHMT2-224ENST00000556737 RTF1Q92541 710 aaKnown RBP13.73□□□□□ -0.21
SHMT2-224ENST00000556737 DDR1Q08345 913 aa13.72□□□□□ -0.21
SHMT2-224ENST00000556737 NFE2L2Q16236 605 aa13.72□□□□□ -0.21
SHMT2-224ENST00000556737 FMNL2Q96PY5 1086 aa13.72□□□□□ -0.21
SHMT2-224ENST00000556737 GPR162Q16538 588 aa13.71□□□□□ -0.21
SHMT2-224ENST00000556737 PRKRIP1Q9H875 184 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-224ENST00000556737 BCL2L12Q9HB09 334 aa13.71□□□□□ -0.21
SHMT2-224ENST00000556737 DLEC1Q9Y238 1755 aa13.71□□□□□ -0.22
SHMT2-224ENST00000556737 PRAMEF22A3QJZ6 481 aa13.7□□□□□ -0.22
SHMT2-224ENST00000556737 ZNF316A6NFI3 1004 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-224ENST00000556737 EIF5P55010 431 aaKnown RBP13.7□□□□□ -0.22
SHMT2-224ENST00000556737 USPL1Q5W0Q7 1092 aa13.7□□□□□ -0.22
SHMT2-224ENST00000556737 PELP1Q8IZL8 1130 aaKnown RBP13.7□□□□□ -0.22
SHMT2-224ENST00000556737 NARFQ9UHQ1 456 aa13.7□□□□□ -0.22
SHMT2-224ENST00000556737 MAPK8IP3Q9UPT6 1336 aa13.69□□□□□ -0.22
SHMT2-224ENST00000556737 POLRMTO00411 1230 aaKnown RBP13.69□□□□□ -0.22
SHMT2-224ENST00000556737 STARD3NLO95772 234 aa13.69□□□□□ -0.22
SHMT2-224ENST00000556737 CANXP27824 592 aaKnown RBP13.69□□□□□ -0.22
SHMT2-224ENST00000556737 TEX13AQ9BXU3 409 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-224ENST00000556737 TM4SF1P30408 202 aa13.68□□□□□ -0.22
SHMT2-224ENST00000556737 THUMPD2Q9BTF0 503 aaKnown RBP13.68□□□□□ -0.22
SHMT2-224ENST00000556737 PARP3Q9Y6F1 533 aa13.68□□□□□ -0.22
SHMT2-224ENST00000556737 ARFGEF1Q9Y6D6 1849 aa13.68□□□□□ -0.22
SHMT2-224ENST00000556737 ANKRD31Q8N7Z5 1873 aa13.67□□□□□ -0.22
SHMT2-224ENST00000556737 ZPR1O75312 459 aa13.67□□□□□ -0.22
SHMT2-224ENST00000556737 A1BGP04217 495 aa13.67□□□□□ -0.22
SHMT2-224ENST00000556737 NEFMP07197 916 aa13.67□□□□□ -0.22
SHMT2-224ENST00000556737 IL6STP40189 918 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-224ENST00000556737 TAF7Q15545 349 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-224ENST00000556737 PNNQ9H307 717 aaKnown RBP13.67□□□□□ -0.22
SHMT2-224ENST00000556737 USP16Q9Y5T5 823 aa13.67□□□□□ -0.22
SHMT2-224ENST00000556737 COL11A2P13942 1736 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-224ENST00000556737 NFIXQ14938 502 aa13.66□□□□□ -0.22
SHMT2-224ENST00000556737 MIS18AQ9NYP9 233 aa13.66□□□□□ -0.22
SHMT2-224ENST00000556737 WWC3Q9ULE0 1092 aa13.66□□□□□ -0.22
SHMT2-224ENST00000556737 CARMIL3Q8ND23 1372 aa13.66□□□□□ -0.22
SHMT2-224ENST00000556737 GRIN3BO60391 1043 aa13.65□□□□□ -0.22
SHMT2-224ENST00000556737 SNRPA1P09661 255 aaKnown RBP13.65□□□□□ -0.22
SHMT2-224ENST00000556737 TMPOP42166 694 aaKnown RBP13.65□□□□□ -0.22
SHMT2-224ENST00000556737 PIP4K2AP48426 406 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-224ENST00000556737 TGFB2P61812 414 aa13.65□□□□□ -0.22
SHMT2-224ENST00000556737 ADCY9O60503 1353 aa13.65□□□□□ -0.22
SHMT2-224ENST00000556737 A0A087WZG4 1122 aa13.64□□□□□ -0.23
SHMT2-224ENST00000556737 CCDC146Q8IYE0 955 aa13.64□□□□□ -0.23
SHMT2-224ENST00000556737 PNISRQ8TF01 805 aaKnown RBP13.64□□□□□ -0.23
SHMT2-224ENST00000556737 A0A0G2JLW4 131 aa13.63□□□□□ -0.23
SHMT2-224ENST00000556737 NBPF26B4DH59 902 aa13.63□□□□□ -0.23
SHMT2-224ENST00000556737 CAMTA2O94983 1202 aa13.63□□□□□ -0.23
SHMT2-224ENST00000556737 DPEP1P16444 411 aa13.63□□□□□ -0.23
SHMT2-224ENST00000556737 KCNA3P22001 575 aa13.63□□□□□ -0.23
SHMT2-224ENST00000556737 NBPF10Q6P3W6 841 aaKnown RBP13.63□□□□□ -0.23
SHMT2-224ENST00000556737 NBPF15Q8N660 670 aa13.63□□□□□ -0.23
SHMT2-224ENST00000556737 ZNF784Q8NCA9 323 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-224ENST00000556737 TBC1D2BQ9UPU7 963 aa13.63□□□□□ -0.23
SHMT2-224ENST00000556737 ZNF330Q9Y3S2 320 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-224ENST00000556737 RIPK4P57078 832 aa13.62□□□□□ -0.23
SHMT2-224ENST00000556737 EIF4A1P60842 406 aaKnown RBP13.62□□□□□ -0.23
SHMT2-224ENST00000556737 WDR43Q15061 677 aaKnown RBP eCLIP13.62□□□□□ -0.23
SHMT2-224ENST00000556737 TBC1D9BQ66K14 1250 aa13.62□□□□□ -0.23
SHMT2-224ENST00000556737 RUNDC1Q96C34 613 aa13.62□□□□□ -0.23
SHMT2-224ENST00000556737 ADAMTS8Q9UP79 889 aa13.62□□□□□ -0.23
SHMT2-224ENST00000556737 RRP7AQ9Y3A4 280 aaKnown RBP13.62□□□□□ -0.23
SHMT2-224ENST00000556737 GIGYF1O75420 1035 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-224ENST00000556737 SERPINB2P05120 415 aa13.61□□□□□ -0.23
SHMT2-224ENST00000556737 DZIP3Q86Y13 1208 aaKnown RBP13.61□□□□□ -0.23
SHMT2-224ENST00000556737 TRIM35Q9UPQ4 493 aa13.61□□□□□ -0.23
SHMT2-224ENST00000556737 CHRNA5P30532 468 aa13.6□□□□□ -0.23
SHMT2-224ENST00000556737 LMOD3Q0VAK6 560 aa13.6□□□□□ -0.23
SHMT2-224ENST00000556737 ARFGEF2Q9Y6D5 1785 aa13.6□□□□□ -0.23
SHMT2-224ENST00000556737 CCDC184Q52MB2 194 aa13.59□□□□□ -0.23
SHMT2-224ENST00000556737 BICDL1Q6ZP65 573 aa13.59□□□□□ -0.23
SHMT2-224ENST00000556737 TSPYL4Q9UJ04 414 aa13.59□□□□□ -0.23
SHMT2-224ENST00000556737 BCS1LQ9Y276 419 aa13.59□□□□□ -0.23
SHMT2-224ENST00000556737 NUP98P52948 1817 aa13.59□□□□□ -0.23
SHMT2-224ENST00000556737 TNRC6CQ9HCJ0 1690 aaKnown RBP13.59□□□□□ -0.23
SHMT2-224ENST00000556737 ATP10DQ9P241 1426 aa13.58□□□□□ -0.24
SHMT2-224ENST00000556737 BABAM1Q9NWV8 329 aa13.58□□□□□ -0.24
SHMT2-224ENST00000556737 RGL2O15211 777 aa13.57□□□□□ -0.24
SHMT2-224ENST00000556737 PRR5LQ6MZQ0 368 aa13.57□□□□□ -0.24
SHMT2-224ENST00000556737 CACNA1SQ13698 1873 aa13.57□□□□□ -0.24
SHMT2-224ENST00000556737 ANKRD36CQ5JPF3 1778 aa13.56□□□□□ -0.24
SHMT2-224ENST00000556737 NEUROD2Q15784 382 aa13.56□□□□□ -0.24
SHMT2-224ENST00000556737 LRP10Q7Z4F1 713 aa13.56□□□□□ -0.24
SHMT2-224ENST00000556737 PIM2Q9P1W9 311 aa13.56□□□□□ -0.24
SHMT2-224ENST00000556737 ERBB4Q15303 1308 aa13.56□□□□□ -0.24
SHMT2-224ENST00000556737 CHL1O00533 1208 aa13.55□□□□□ -0.24
SHMT2-224ENST00000556737 DALRD3Q5D0E6 543 aaKnown RBP13.55□□□□□ -0.24
SHMT2-224ENST00000556737 CLEC4GQ6UXB4 293 aa13.55□□□□□ -0.24
SHMT2-224ENST00000556737 SBF1O95248 1867 aa13.55□□□□□ -0.24
SHMT2-224ENST00000556737 TIAM2Q8IVF5 1701 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms