RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 PDE1AP54750 535 aa12.53□□□□□ -0.4
TMEM260-211ENST00000556648 ABCC6O95255 1503 aa12.52□□□□□ -0.4
TMEM260-211ENST00000556648 HSCBQ8IWL3 235 aa12.52□□□□□ -0.4
TMEM260-211ENST00000556648 PPP1R42Q7Z4L9 355 aa12.52□□□□□ -0.41
TMEM260-211ENST00000556648 LRRCC1Q9C099 1032 aa12.52□□□□□ -0.41
TMEM260-211ENST00000556648 SLC52A2Q9HAB3 445 aa12.52□□□□□ -0.41
TMEM260-211ENST00000556648 DBF4Q9UBU7 674 aaPredicted RBP12.52□□□□□ -0.41
TMEM260-211ENST00000556648 CPDO75976 1380 aa12.51□□□□□ -0.41
TMEM260-211ENST00000556648 SSH3Q8TE77 659 aa12.51□□□□□ -0.41
TMEM260-211ENST00000556648 MAP3K2Q9Y2U5 619 aa12.51□□□□□ -0.41
TMEM260-211ENST00000556648 ABCA3Q99758 1704 aa12.51□□□□□ -0.41
TMEM260-211ENST00000556648 MRC1P22897 1456 aa12.51□□□□□ -0.41
TMEM260-211ENST00000556648 CYP27B1O15528 508 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 POLA2Q14181 598 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 PDIA6Q15084 440 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 NFATC2IPQ8NCF5 419 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 OSBPL3Q9H4L5 887 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 IL1RAPL2Q9NP60 686 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 SPG7Q9UQ90 795 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 ZNF790Q6PG37 636 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 SNX21Q969T3 373 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 GLI3P10071 1580 aa12.5□□□□□ -0.41
TMEM260-211ENST00000556648 MX1P20591 662 aa12.49□□□□□ -0.41
TMEM260-211ENST00000556648 CWF19L2Q2TBE0 894 aaKnown RBP12.49□□□□□ -0.41
TMEM260-211ENST00000556648 SRGAP3O43295 1099 aa12.49□□□□□ -0.41
TMEM260-211ENST00000556648 AIMP1Q12904 312 aaKnown RBP12.49□□□□□ -0.41
TMEM260-211ENST00000556648 NUTM1Q86Y26 1132 aa12.49□□□□□ -0.41
TMEM260-211ENST00000556648 USP26Q9BXU7 913 aa12.49□□□□□ -0.41
TMEM260-211ENST00000556648 SURF6O75683 361 aaKnown RBP12.48□□□□□ -0.41
TMEM260-211ENST00000556648 PIP4K2AP48426 406 aaPredicted RBP12.48□□□□□ -0.41
TMEM260-211ENST00000556648 KSR2Q6VAB6 950 aa12.48□□□□□ -0.41
TMEM260-211ENST00000556648 IFNL2Q8IZJ0 200 aa12.48□□□□□ -0.41
TMEM260-211ENST00000556648 ZNF496Q96IT1 587 aaPredicted RBP12.48□□□□□ -0.41
TMEM260-211ENST00000556648 MYL6BP14649 208 aa12.47□□□□□ -0.41
TMEM260-211ENST00000556648 UNC5CLQ8IV45 518 aa12.47□□□□□ -0.41
TMEM260-211ENST00000556648 SLAIN2Q9P270 581 aa12.47□□□□□ -0.41
TMEM260-211ENST00000556648 SOS2Q07890 1332 aaPredicted RBP12.47□□□□□ -0.41
TMEM260-211ENST00000556648 PARP4Q9UKK3 1724 aaKnown RBP12.47□□□□□ -0.41
TMEM260-211ENST00000556648 PRDM11Q9NQV5 511 aa12.47□□□□□ -0.41
TMEM260-211ENST00000556648 DDX21Q9NR30 783 aaKnown RBP eCLIP12.47□□□□□ -0.41
TMEM260-211ENST00000556648 FOXD4L1Q9NU39 408 aa12.47□□□□□ -0.41
TMEM260-211ENST00000556648 HYPKQ9NX55 129 aa12.47□□□□□ -0.41
TMEM260-211ENST00000556648 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.47□□□□□ -0.412e-7■■■■■ 28.3
TMEM260-211ENST00000556648 HSP90AB1P08238 724 aaKnown RBP12.46□□□□□ -0.41
TMEM260-211ENST00000556648 DDIT3P35638 169 aa12.46□□□□□ -0.41
TMEM260-211ENST00000556648 CHMP4AQ9BY43 222 aa12.46□□□□□ -0.41
TMEM260-211ENST00000556648 STAP2Q9UGK3 403 aa12.46□□□□□ -0.41
TMEM260-211ENST00000556648 COL5A2P05997 1499 aaPredicted RBP12.46□□□□□ -0.42
TMEM260-211ENST00000556648 RHPN1Q8TCX5 695 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 DCAF5Q96JK2 942 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 SHANK3Q9BYB0 1731 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 ALDH1L1O75891 902 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 MAP4K4O95819 1239 aaPredicted RBP12.45□□□□□ -0.42
TMEM260-211ENST00000556648 CASC1Q6TDU7 716 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 XAGE3Q8WTP9 111 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 RILPL2Q969X0 211 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 SUCLG2Q96I99 432 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 CHMP5Q9NZZ3 219 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 USP16Q9Y5T5 823 aa12.45□□□□□ -0.42
TMEM260-211ENST00000556648 WDR17Q8IZU2 1322 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 TRIM6-TRIM34B2RNG4 842 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 ERC2O15083 957 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 RAB11FIP3O75154 756 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 IGKV5-2P06315 115 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 LRP10Q7Z4F1 713 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 KAZALD1Q96I82 304 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 C9orf78Q9NZ63 289 aaPredicted RBP12.44□□□□□ -0.42
TMEM260-211ENST00000556648 PA2G4Q9UQ80 394 aaKnown RBP12.44□□□□□ -0.42
TMEM260-211ENST00000556648 LAMB4A4D0S4 1761 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 K7ELQ4 463 aaPredicted RBP12.44□□□□□ -0.42
TMEM260-211ENST00000556648 TOM1L2Q6ZVM7 507 aa12.44□□□□□ -0.42
TMEM260-211ENST00000556648 NHSL1Q5SYE7 1610 aa12.43□□□□□ -0.42
TMEM260-211ENST00000556648 CHMLP26374 656 aa12.43□□□□□ -0.42
TMEM260-211ENST00000556648 GSE1Q14687 1217 aa12.43□□□□□ -0.42
TMEM260-211ENST00000556648 COPS6Q7L5N1 327 aa12.43□□□□□ -0.42
TMEM260-211ENST00000556648 LINS1Q8NG48 757 aa12.43□□□□□ -0.42
TMEM260-211ENST00000556648 ESYT1Q9BSJ8 1104 aa12.43□□□□□ -0.42
TMEM260-211ENST00000556648 IL25Q9H293 177 aa12.43□□□□□ -0.42
TMEM260-211ENST00000556648 GRM8O00222 908 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 CABP4P57796 275 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 MTX1Q13505 466 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 RABEP1Q15276 862 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 RIC3Q7Z5B4 369 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 TTC5Q8N0Z6 440 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 PI4K2BQ8TCG2 481 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 AOX1Q06278 1338 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 ARFGEF2Q9Y6D5 1785 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 AK9Q5TCS8 1911 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 PLEKHG2Q9H7P9 1386 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 DDX58O95786 925 aaKnown RBP12.42□□□□□ -0.42
TMEM260-211ENST00000556648 PIAS4Q8N2W9 510 aaPredicted RBP12.42□□□□□ -0.42
TMEM260-211ENST00000556648 JARID2Q92833 1246 aaPredicted RBP12.42□□□□□ -0.42
TMEM260-211ENST00000556648 KIF1BPQ96EK5 621 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 MYD88Q99836 296 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 BICC1Q9H694 974 aaKnown RBP12.42□□□□□ -0.42
TMEM260-211ENST00000556648 STRN4Q9NRL3 753 aa12.42□□□□□ -0.42
TMEM260-211ENST00000556648 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.42□□□□□ -0.42
TMEM260-211ENST00000556648 AFDNP55196 1824 aaKnown RBP12.41□□□□□ -0.42
TMEM260-211ENST00000556648 REC8O95072 547 aa12.41□□□□□ -0.42
TMEM260-211ENST00000556648 SNRPA1P09661 255 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms