RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CAMK4Q16566 473 aa17.8■□□□□ 0.44
CUX1-215ENST00000556210 PRDM11Q9NQV5 511 aa17.8■□□□□ 0.44
CUX1-215ENST00000556210 GAS2L3Q86XJ1 694 aa17.8■□□□□ 0.44
CUX1-215ENST00000556210 HECW2Q9P2P5 1572 aa17.8■□□□□ 0.44
CUX1-215ENST00000556210 RTL1A6NKG5 1358 aa17.8■□□□□ 0.44
CUX1-215ENST00000556210 FKBP4Q02790 459 aaKnown RBP eCLIP17.8■□□□□ 0.44
CUX1-215ENST00000556210 KCNH5Q8NCM2 988 aa17.8■□□□□ 0.44
CUX1-215ENST00000556210 LRRC2Q9BYS8 371 aa17.8■□□□□ 0.44
CUX1-215ENST00000556210 ZBTB3Q9H5J0 574 aa17.8■□□□□ 0.44
CUX1-215ENST00000556210 FSD2A1L4K1 749 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 CHMLP26374 656 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 RNF20Q5VTR2 975 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 LARP1BQ659C4 914 aaKnown RBP17.79■□□□□ 0.44
CUX1-215ENST00000556210 COPS6Q7L5N1 327 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 USP44Q9H0E7 712 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 CLASP1Q7Z460 1538 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 TFIP11Q9UBB9 837 aaKnown RBP17.79■□□□□ 0.44
CUX1-215ENST00000556210 ATP6V1DQ9Y5K8 247 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 TTC21AQ8NDW8 1320 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 PLEKHG3A1L390 1219 aa17.79■□□□□ 0.44
CUX1-215ENST00000556210 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.79■□□□□ 0.44
CUX1-215ENST00000556210 GLRX3O76003 335 aaKnown RBP17.78■□□□□ 0.44
CUX1-215ENST00000556210 PHF14O94880 888 aa17.78■□□□□ 0.44
CUX1-215ENST00000556210 PRIM1P49642 420 aaKnown RBP17.78■□□□□ 0.44
CUX1-215ENST00000556210 SF3A1Q15459 793 aaKnown RBP17.78■□□□□ 0.44
CUX1-215ENST00000556210 RAB11FIP3O75154 756 aa17.78■□□□□ 0.44
CUX1-215ENST00000556210 MCM2P49736 904 aa17.78■□□□□ 0.44
CUX1-215ENST00000556210 XAGE3Q8WTP9 111 aa17.77■□□□□ 0.44
CUX1-215ENST00000556210 ADGRB3O60242 1522 aa17.77■□□□□ 0.44
CUX1-215ENST00000556210 ZSCAN23Q3MJ62 389 aa17.77■□□□□ 0.44
CUX1-215ENST00000556210 SNRKQ9NRH2 765 aa17.77■□□□□ 0.44
CUX1-215ENST00000556210 A0A087WZG4 1122 aa17.77■□□□□ 0.43
CUX1-215ENST00000556210 TBX22Q9Y458 520 aa17.77■□□□□ 0.43
CUX1-215ENST00000556210 PIK3R4Q99570 1358 aa17.76■□□□□ 0.43
CUX1-215ENST00000556210 BLOC1S2Q6QNY1 142 aa17.76■□□□□ 0.43
CUX1-215ENST00000556210 EDC3Q96F86 508 aaKnown RBP17.76■□□□□ 0.43
CUX1-215ENST00000556210 TSPY26PQ9H489 355 aa17.76■□□□□ 0.43
CUX1-215ENST00000556210 ECHDC1Q9NTX5 307 aa17.76■□□□□ 0.43
CUX1-215ENST00000556210 WDR33Q9C0J8 1336 aaKnown RBP17.76■□□□□ 0.43
CUX1-215ENST00000556210 RAB11FIP4Q86YS3 637 aa17.76■□□□□ 0.43
CUX1-215ENST00000556210 GUCY1B3Q02153 619 aa17.75■□□□□ 0.43
CUX1-215ENST00000556210 MBD3O95983 291 aa17.75■□□□□ 0.43
CUX1-215ENST00000556210 FAM135BQ49AJ0 1406 aa17.75■□□□□ 0.43
CUX1-215ENST00000556210 KIDINS220Q9ULH0 1771 aa17.75■□□□□ 0.43
CUX1-215ENST00000556210 QRICH2Q9H0J4 1663 aa17.75■□□□□ 0.43
CUX1-215ENST00000556210 PROSER3Q2NL68 480 aa17.75■□□□□ 0.43
CUX1-215ENST00000556210 KLHL40Q2TBA0 621 aa17.75■□□□□ 0.43
CUX1-215ENST00000556210 DDX46Q7L014 1031 aaKnown RBP17.75■□□□□ 0.43
CUX1-215ENST00000556210 CHAF1AQ13111 956 aaPredicted RBP17.74■□□□□ 0.43
CUX1-215ENST00000556210 FAM173BQ6P4H8 233 aa17.74■□□□□ 0.43
CUX1-215ENST00000556210 CSPP1Q1MSJ5 1256 aa17.74■□□□□ 0.43
CUX1-215ENST00000556210 CHMP4CQ96CF2 233 aa17.74■□□□□ 0.43
CUX1-215ENST00000556210 MAP3K5Q99683 1374 aa17.74■□□□□ 0.43
CUX1-215ENST00000556210 SETD1BQ9UPS6 1966 aaKnown RBP17.74■□□□□ 0.43
CUX1-215ENST00000556210 ZNF830Q96NB3 372 aaPredicted RBP17.74■□□□□ 0.43
CUX1-215ENST00000556210 CNPY2Q9Y2B0 182 aa17.74■□□□□ 0.43
CUX1-215ENST00000556210 UQCRHLA0A096LP55 91 aa17.73■□□□□ 0.43
CUX1-215ENST00000556210 UQCRHP07919 91 aa17.73■□□□□ 0.43
CUX1-215ENST00000556210 HSPA2P54652 639 aa17.73■□□□□ 0.43
CUX1-215ENST00000556210 ABCA9Q8IUA7 1624 aa17.73■□□□□ 0.43
CUX1-215ENST00000556210 IQGAP1P46940 1657 aa17.73■□□□□ 0.43
CUX1-215ENST00000556210 ERC1Q8IUD2 1116 aa17.72■□□□□ 0.43
CUX1-215ENST00000556210 USP25Q9UHP3 1055 aa17.72■□□□□ 0.43
CUX1-215ENST00000556210 FMNL2Q96PY5 1086 aa17.72■□□□□ 0.43
CUX1-215ENST00000556210 SOS1Q07889 1333 aaPredicted RBP17.72■□□□□ 0.43
CUX1-215ENST00000556210 SBNO1A3KN83 1393 aa17.72■□□□□ 0.43
CUX1-215ENST00000556210 INO80Q9ULG1 1556 aaPredicted RBP17.72■□□□□ 0.43
CUX1-215ENST00000556210 AMOTQ4VCS5 1084 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 IP6K1Q92551 441 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 ZNF592Q92610 1267 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 CCDC39Q9UFE4 941 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 GJB2P29033 226 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 AK2P54819 239 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 CKAP2LQ8IYA6 745 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 BICC1Q9H694 974 aaKnown RBP17.71■□□□□ 0.43
CUX1-215ENST00000556210 LIMCH1Q9UPQ0 1083 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 ARAP3Q8WWN8 1544 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 A2ML1A8K2U0 1454 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 LARP1Q6PKG0 1096 aaKnown RBP17.71■□□□□ 0.43
CUX1-215ENST00000556210 PDCL3Q9H2J4 239 aa17.71■□□□□ 0.43
CUX1-215ENST00000556210 CPLX1O14810 134 aa17.7■□□□□ 0.42
CUX1-215ENST00000556210 GPTP24298 496 aa17.7■□□□□ 0.42
CUX1-215ENST00000556210 GRM8O00222 908 aa17.7■□□□□ 0.42
CUX1-215ENST00000556210 GTF2E1P29083 439 aaPredicted RBP17.7■□□□□ 0.42
CUX1-215ENST00000556210 CCT2P78371 535 aaKnown RBP17.7■□□□□ 0.42
CUX1-215ENST00000556210 GIMAP6Q6P9H5 292 aa17.7■□□□□ 0.42
CUX1-215ENST00000556210 FAM227BQ96M60 508 aa17.7■□□□□ 0.42
CUX1-215ENST00000556210 ATP2B1P20020 1258 aa17.7■□□□□ 0.42
CUX1-215ENST00000556210 PSMA5P28066 241 aa17.7■□□□□ 0.42
CUX1-215ENST00000556210 NCBP3Q53F19 620 aaKnown RBP17.7■□□□□ 0.42
CUX1-215ENST00000556210 USP48Q86UV5 1035 aa17.7■□□□□ 0.42
CUX1-215ENST00000556210 ANKRD13DQ6ZTN6 518 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 PNPLA6Q8IY17 1366 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 BECN2A8MW95 431 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 AKAP4Q5JQC9 854 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 LAMC1P11047 1609 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 ADGRB1O14514 1584 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 HCLS1P14317 486 aaPredicted RBP17.69■□□□□ 0.42
CUX1-215ENST00000556210 EIF4A1P60842 406 aaKnown RBP17.69■□□□□ 0.42
CUX1-215ENST00000556210 KSR2Q6VAB6 950 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms