RNA–Protein interactions for RNA: ENST00000556063.1

TDP1-214, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 1,076 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-214ENST00000556063 CNKSR2Q8WXI2 1034 aa9.85□□□□□ -0.83
TDP1-214ENST00000556063 SLC4A9Q96Q91 983 aa9.85□□□□□ -0.83
TDP1-214ENST00000556063 LRRC4BQ9NT99 713 aa9.85□□□□□ -0.83
TDP1-214ENST00000556063 ERBB4Q15303 1308 aa9.84□□□□□ -0.83
TDP1-214ENST00000556063 CT47B1P0C2W7 299 aaPredicted RBP9.84□□□□□ -0.83
TDP1-214ENST00000556063 CYP19A1P11511 503 aaPredicted RBP9.84□□□□□ -0.83
TDP1-214ENST00000556063 EIF2S2P20042 333 aaKnown RBP9.84□□□□□ -0.83
TDP1-214ENST00000556063 CRKLP46109 303 aaKnown RBP9.84□□□□□ -0.83
TDP1-214ENST00000556063 EXOSC9Q06265 439 aaKnown RBP9.84□□□□□ -0.83
TDP1-214ENST00000556063 TWISTNBQ3B726 338 aaPredicted RBP9.84□□□□□ -0.83
TDP1-214ENST00000556063 LINC00116Q8NCU8 138 aa9.84□□□□□ -0.83
TDP1-214ENST00000556063 FLAD1Q8NFF5 587 aa9.84□□□□□ -0.83
TDP1-214ENST00000556063 CDCA7LQ96GN5 454 aa9.84□□□□□ -0.83
TDP1-214ENST00000556063 SPINK5Q9NQ38 1064 aaPredicted RBP9.84□□□□□ -0.83
TDP1-214ENST00000556063 CCDC87Q9NVE4 849 aa9.84□□□□□ -0.83
TDP1-214ENST00000556063 RTCBQ9Y3I0 505 aaKnown RBP9.84□□□□□ -0.83
TDP1-214ENST00000556063 USP16Q9Y5T5 823 aa9.84□□□□□ -0.83
TDP1-214ENST00000556063 TAF1LQ8IZX4 1826 aa9.84□□□□□ -0.83
TDP1-214ENST00000556063 C5P01031 1676 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 RREB1Q92766 1687 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 CICQ96RK0 1608 aaPredicted RBP9.83□□□□□ -0.84
TDP1-214ENST00000556063 ELL2O00472 640 aaPredicted RBP9.83□□□□□ -0.84
TDP1-214ENST00000556063 GNPATO15228 680 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 RPS6KA4O75676 772 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 HDGFL1Q5TGJ6 251 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 CCDC30Q5VVM6 783 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 TRMT2AQ8IZ69 625 aaKnown RBP9.83□□□□□ -0.84
TDP1-214ENST00000556063 C8orf58Q8NAV2 365 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 ZNF428Q96B54 188 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 TFCP2L1Q9NZI6 479 aa9.83□□□□□ -0.84
TDP1-214ENST00000556063 A0A087WZG4 1122 aa9.82□□□□□ -0.84
TDP1-214ENST00000556063 CANXP27824 592 aaKnown RBP9.82□□□□□ -0.84
TDP1-214ENST00000556063 SLC15A2Q16348 729 aa9.82□□□□□ -0.84
TDP1-214ENST00000556063 KRT24Q2M2I5 525 aa9.82□□□□□ -0.84
TDP1-214ENST00000556063 STK31Q9BXU1 1019 aa9.82□□□□□ -0.84
TDP1-214ENST00000556063 DBF4Q9UBU7 674 aaPredicted RBP9.82□□□□□ -0.84
TDP1-214ENST00000556063 C4BP0C0L5 1744 aa9.82□□□□□ -0.84
TDP1-214ENST00000556063 TJP1Q07157 1748 aa9.82□□□□□ -0.84
TDP1-214ENST00000556063 NUP188Q5SRE5 1749 aa9.82□□□□□ -0.84
TDP1-214ENST00000556063 CACNA1FO60840 1977 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 LAMB4A4D0S4 1761 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 PRAMEF22A3QJZ6 481 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 VAMP4O75379 141 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 A1BGP04217 495 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 SSFA2P28290 1259 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 IL6STP40189 918 aaPredicted RBP9.81□□□□□ -0.84
TDP1-214ENST00000556063 TRAPPC3LQ5T215 181 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 INTS5Q6P9B9 1019 aaKnown RBP9.81□□□□□ -0.84
TDP1-214ENST00000556063 TSPYL6Q8N831 410 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 AKT1S1Q96B36 256 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 DDX21Q9NR30 783 aaKnown RBP eCLIP9.81□□□□□ -0.84
TDP1-214ENST00000556063 ZBTB1Q9Y2K1 713 aa9.81□□□□□ -0.84
TDP1-214ENST00000556063 COL5A3P25940 1745 aaPredicted RBP9.81□□□□□ -0.84
TDP1-214ENST00000556063 MYH14Q7Z406 1995 aaKnown RBP9.81□□□□□ -0.84
TDP1-214ENST00000556063 NECTIN2Q92692 538 aa9.8□□□□□ -0.84
TDP1-214ENST00000556063 HYPKQ9NX55 129 aa9.8□□□□□ -0.84
TDP1-214ENST00000556063 ZNF330Q9Y3S2 320 aaPredicted RBP9.8□□□□□ -0.84
TDP1-214ENST00000556063 EP400Q96L91 3159 aa9.79□□□□□ -0.84
TDP1-214ENST00000556063 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.79□□□□□ -0.84
TDP1-214ENST00000556063 RFC4P35249 363 aa9.79□□□□□ -0.84
TDP1-214ENST00000556063 EIF5P55010 431 aaKnown RBP9.79□□□□□ -0.84
TDP1-214ENST00000556063 ZNF827Q17R98 1081 aa9.79□□□□□ -0.84
TDP1-214ENST00000556063 ARXQ96QS3 562 aa9.79□□□□□ -0.84
TDP1-214ENST00000556063 ANO8Q9HCE9 1232 aaPredicted RBP9.79□□□□□ -0.84
TDP1-214ENST00000556063 NBPF26B4DH59 902 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 ZPR1O75312 459 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 PHF14O94880 888 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 MYL6BP14649 208 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 NBPF10Q6P3W6 841 aaKnown RBP9.78□□□□□ -0.84
TDP1-214ENST00000556063 KIF6Q6ZMV9 814 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 NBPF15Q8N660 670 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 SLC16A10Q8TF71 515 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 CHPF2Q9P2E5 772 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 UBR3Q6ZT12 1888 aa9.78□□□□□ -0.84
TDP1-214ENST00000556063 COL15A1P39059 1388 aa9.77□□□□□ -0.84
TDP1-214ENST00000556063 DDX58O95786 925 aaKnown RBP9.77□□□□□ -0.85
TDP1-214ENST00000556063 SLC4A2P04920 1241 aa9.77□□□□□ -0.85
TDP1-214ENST00000556063 R3HDM1Q15032 1099 aaKnown RBP9.77□□□□□ -0.85
TDP1-214ENST00000556063 ALDH1L2Q3SY69 923 aa9.77□□□□□ -0.85
TDP1-214ENST00000556063 DZIP3Q86Y13 1208 aaKnown RBP9.77□□□□□ -0.85
TDP1-214ENST00000556063 ARHGEF1Q92888 912 aaKnown RBP9.77□□□□□ -0.85
TDP1-214ENST00000556063 ZNF652Q9Y2D9 606 aa9.77□□□□□ -0.85
TDP1-214ENST00000556063 PNPLA7Q6ZV29 1317 aa9.77□□□□□ -0.85
TDP1-214ENST00000556063 QSER1Q2KHR3 1735 aa9.76□□□□□ -0.85
TDP1-214ENST00000556063 RGL2O15211 777 aa9.76□□□□□ -0.85
TDP1-214ENST00000556063 PIP4K2AP48426 406 aaPredicted RBP9.76□□□□□ -0.85
TDP1-214ENST00000556063 PDIA6Q15084 440 aa9.76□□□□□ -0.85
TDP1-214ENST00000556063 COL23A1Q86Y22 540 aaPredicted RBP9.76□□□□□ -0.85
TDP1-214ENST00000556063 SMC4Q9NTJ3 1288 aa9.76□□□□□ -0.85
TDP1-214ENST00000556063 NARFQ9UHQ1 456 aa9.76□□□□□ -0.85
TDP1-214ENST00000556063 PSDA5PKW4 1024 aaPredicted RBP9.75□□□□□ -0.85
TDP1-214ENST00000556063 ERVV-1B6SEH8 477 aa9.75□□□□□ -0.85
TDP1-214ENST00000556063 TCERG1O14776 1098 aaKnown RBP9.75□□□□□ -0.85
TDP1-214ENST00000556063 ANXA1P04083 346 aa9.75□□□□□ -0.85
TDP1-214ENST00000556063 AIMP1Q12904 312 aaKnown RBP9.75□□□□□ -0.85
TDP1-214ENST00000556063 PROSER3Q2NL68 480 aa9.75□□□□□ -0.85
TDP1-214ENST00000556063 COPS6Q7L5N1 327 aa9.75□□□□□ -0.85
TDP1-214ENST00000556063 NLGN1Q8N2Q7 840 aa9.75□□□□□ -0.85
TDP1-214ENST00000556063 XAGE3Q8WTP9 111 aa9.75□□□□□ -0.85
TDP1-214ENST00000556063 TBC1D2BQ9UPU7 963 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms