RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 CCDC146Q8IYE0 955 aa27.12■■□□□ 1.93
VTI1B-205ENST00000555543 WDR43Q15061 677 aaKnown RBP eCLIP27.11■■□□□ 1.93
VTI1B-205ENST00000555543 TAF7Q15545 349 aaPredicted RBP27.11■■□□□ 1.93
VTI1B-205ENST00000555543 NLGN1Q8N2Q7 840 aa27.11■■□□□ 1.93
VTI1B-205ENST00000555543 STARD3NLO95772 234 aa27.1■■□□□ 1.93
VTI1B-205ENST00000555543 CANXP27824 592 aaKnown RBP27.1■■□□□ 1.93
VTI1B-205ENST00000555543 MIS18AQ9NYP9 233 aa27.1■■□□□ 1.93
VTI1B-205ENST00000555543 ADAMTS8Q9UP79 889 aa27.1■■□□□ 1.93
VTI1B-205ENST00000555543 KDM3BQ7LBC6 1761 aa27.09■■□□□ 1.93
VTI1B-205ENST00000555543 PRAMEF22A3QJZ6 481 aa27.09■■□□□ 1.93
VTI1B-205ENST00000555543 CD2APQ9Y5K6 639 aa27.09■■□□□ 1.93
VTI1B-205ENST00000555543 DCAF8L1A6NGE4 600 aa27.08■■□□□ 1.93
VTI1B-205ENST00000555543 TMPOP42166 694 aaKnown RBP27.08■■□□□ 1.93
VTI1B-205ENST00000555543 FKBP8Q14318 412 aa27.08■■□□□ 1.93
VTI1B-205ENST00000555543 TEX13AQ9BXU3 409 aaPredicted RBP27.08■■□□□ 1.93
VTI1B-205ENST00000555543 RIPK4P57078 832 aa27.07■■□□□ 1.92
VTI1B-205ENST00000555543 USPL1Q5W0Q7 1092 aa27.06■■□□□ 1.92
VTI1B-205ENST00000555543 RRP7AQ9Y3A4 280 aaKnown RBP27.06■■□□□ 1.92
VTI1B-205ENST00000555543 USP16Q9Y5T5 823 aa27.06■■□□□ 1.92
VTI1B-205ENST00000555543 A1BGP04217 495 aa27.05■■□□□ 1.92
VTI1B-205ENST00000555543 EIF5P55010 431 aaKnown RBP27.05■■□□□ 1.92
VTI1B-205ENST00000555543 CCDC184Q52MB2 194 aa27.04■■□□□ 1.92
VTI1B-205ENST00000555543 RUNDC1Q96C34 613 aa27.04■■□□□ 1.92
VTI1B-205ENST00000555543 NARFQ9UHQ1 456 aa27.04■■□□□ 1.92
VTI1B-205ENST00000555543 ZPR1O75312 459 aa27.03■■□□□ 1.92
VTI1B-205ENST00000555543 SNRPA1P09661 255 aaKnown RBP27.03■■□□□ 1.92
VTI1B-205ENST00000555543 C10orf71Q711Q0 1435 aa27.03■■□□□ 1.92
VTI1B-205ENST00000555543 KIF13BQ9NQT8 1826 aa27.03■■□□□ 1.92
VTI1B-205ENST00000555543 DDR1Q08345 913 aa27.02■■□□□ 1.92
VTI1B-205ENST00000555543 PNISRQ8TF01 805 aaKnown RBP27.02■■□□□ 1.92
VTI1B-205ENST00000555543 BCL2L12Q9HB09 334 aa27.02■■□□□ 1.92
VTI1B-205ENST00000555543 GPR162Q16538 588 aa27.01■■□□□ 1.91
VTI1B-205ENST00000555543 PELP1Q8IZL8 1130 aaKnown RBP27.01■■□□□ 1.91
VTI1B-205ENST00000555543 PARP3Q9Y6F1 533 aa27.01■■□□□ 1.91
VTI1B-205ENST00000555543 LAMB4A4D0S4 1761 aa27.01■■□□□ 1.91
VTI1B-205ENST00000555543 KIAA1551Q9HCM1 1747 aa27.01■■□□□ 1.91
VTI1B-205ENST00000555543 SCN7AQ01118 1682 aa27.01■■□□□ 1.91
VTI1B-205ENST00000555543 PIP4K2AP48426 406 aaPredicted RBP27■■□□□ 1.91
VTI1B-205ENST00000555543 NEUROD2Q15784 382 aa27■■□□□ 1.91
VTI1B-205ENST00000555543 ZNF330Q9Y3S2 320 aaPredicted RBP27■■□□□ 1.91
VTI1B-205ENST00000555543 YBX3P16989 372 aaKnown RBP eCLIP26.99■■□□□ 1.912e-6■■■□□ 16.9
VTI1B-205ENST00000555543 IL6STP40189 918 aaPredicted RBP26.99■■□□□ 1.91
VTI1B-205ENST00000555543 TM4SF1P30408 202 aa26.98■■□□□ 1.91
VTI1B-205ENST00000555543 EIF4A1P60842 406 aaKnown RBP26.98■■□□□ 1.91
VTI1B-205ENST00000555543 LMOD3Q0VAK6 560 aa26.98■■□□□ 1.91
VTI1B-205ENST00000555543 PXDNLA1KZ92 1463 aa26.98■■□□□ 1.91
VTI1B-205ENST00000555543 POLRMTO00411 1230 aaKnown RBP26.97■■□□□ 1.91
VTI1B-205ENST00000555543 TRIM35Q9UPQ4 493 aa26.97■■□□□ 1.91
VTI1B-205ENST00000555543 A0A087WZG4 1122 aa26.96■■□□□ 1.91
VTI1B-205ENST00000555543 NFIXQ14938 502 aa26.96■■□□□ 1.91
VTI1B-205ENST00000555543 TBC1D2BQ9UPU7 963 aa26.96■■□□□ 1.91
VTI1B-205ENST00000555543 TSPYL4Q9UJ04 414 aa26.95■■□□□ 1.9
VTI1B-205ENST00000555543 BCORQ6W2J9 1755 aa26.94■■□□□ 1.9
VTI1B-205ENST00000555543 N4BP2Q86UW6 1770 aaPredicted RBP26.94■■□□□ 1.9
VTI1B-205ENST00000555543 NBPF26B4DH59 902 aa26.94■■□□□ 1.9
VTI1B-205ENST00000555543 ANP32CO43423 234 aa26.94■■□□□ 1.9
VTI1B-205ENST00000555543 GIGYF1O75420 1035 aaPredicted RBP26.94■■□□□ 1.9
VTI1B-205ENST00000555543 YY1P25490 414 aa26.94■■□□□ 1.9
VTI1B-205ENST00000555543 NBPF10Q6P3W6 841 aaKnown RBP26.94■■□□□ 1.9
VTI1B-205ENST00000555543 NBPF15Q8N660 670 aa26.94■■□□□ 1.9
VTI1B-205ENST00000555543 WWC3Q9ULE0 1092 aa26.94■■□□□ 1.9
VTI1B-205ENST00000555543 AFDNP55196 1824 aaKnown RBP26.93■■□□□ 1.9
VTI1B-205ENST00000555543 NRXN2Q9P2S2 1712 aa26.92■■□□□ 1.9
VTI1B-205ENST00000555543 CAMTA2O94983 1202 aa26.91■■□□□ 1.9
VTI1B-205ENST00000555543 APAF1O14727 1248 aa26.9■■□□□ 1.9
VTI1B-205ENST00000555543 DZIP3Q86Y13 1208 aaKnown RBP26.9■■□□□ 1.9
VTI1B-205ENST00000555543 CHD4Q14839 1912 aa26.89■■□□□ 1.9
VTI1B-205ENST00000555543 A0A0G2JLW4 131 aa26.89■■□□□ 1.9
VTI1B-205ENST00000555543 TGFB2P61812 414 aa26.89■■□□□ 1.9
VTI1B-205ENST00000555543 TBC1D9BQ66K14 1250 aa26.89■■□□□ 1.9
VTI1B-205ENST00000555543 BICDL1Q6ZP65 573 aa26.89■■□□□ 1.9
VTI1B-205ENST00000555543 BABAM1Q9NWV8 329 aa26.89■■□□□ 1.9
VTI1B-205ENST00000555543 NPM2Q86SE8 214 aaKnown RBP26.88■■□□□ 1.89
VTI1B-205ENST00000555543 DPEP1P16444 411 aa26.87■■□□□ 1.89
VTI1B-205ENST00000555543 MRS2Q9HD23 443 aa26.87■■□□□ 1.89
VTI1B-205ENST00000555543 CHL1O00533 1208 aa26.86■■□□□ 1.89
VTI1B-205ENST00000555543 SERPINB2P05120 415 aa26.86■■□□□ 1.89
VTI1B-205ENST00000555543 BRCA1P38398 1863 aaKnown RBP26.85■■□□□ 1.89
VTI1B-205ENST00000555543 GRIN3BO60391 1043 aa26.85■■□□□ 1.89
VTI1B-205ENST00000555543 CARMIL3Q8ND23 1372 aa26.84■■□□□ 1.89
VTI1B-205ENST00000555543 LAS1LQ9Y4W2 734 aaKnown RBP26.84■■□□□ 1.89
VTI1B-205ENST00000555543 KCNA3P22001 575 aa26.83■■□□□ 1.89
VTI1B-205ENST00000555543 KRT24Q2M2I5 525 aa26.83■■□□□ 1.89
VTI1B-205ENST00000555543 CHRNA5P30532 468 aa26.81■■□□□ 1.88
VTI1B-205ENST00000555543 SENP3-EIF4A1A0A087X0R7 540 aa26.8■■□□□ 1.88
VTI1B-205ENST00000555543 MYL6BP14649 208 aa26.8■■□□□ 1.88
VTI1B-205ENST00000555543 NGEFQ8N5V2 710 aa26.8■■□□□ 1.88
VTI1B-205ENST00000555543 CFAP44Q96MT7 982 aa26.79■■□□□ 1.88
VTI1B-205ENST00000555543 ANKRD31Q8N7Z5 1873 aa26.79■■□□□ 1.88
VTI1B-205ENST00000555543 EIF2S2P20042 333 aaKnown RBP26.78■■□□□ 1.88
VTI1B-205ENST00000555543 CLEC4GQ6UXB4 293 aa26.78■■□□□ 1.88
VTI1B-205ENST00000555543 SETDB2Q96T68 719 aa26.78■■□□□ 1.88
VTI1B-205ENST00000555543 BCS1LQ9Y276 419 aa26.78■■□□□ 1.88
VTI1B-205ENST00000555543 ERBB4Q15303 1308 aa26.78■■□□□ 1.88
VTI1B-205ENST00000555543 ZNF853P0CG23 659 aa26.77■■□□□ 1.88
VTI1B-205ENST00000555543 PDIA6Q15084 440 aa26.77■■□□□ 1.88
VTI1B-205ENST00000555543 HLFQ16534 295 aa26.77■■□□□ 1.88
VTI1B-205ENST00000555543 PRR5LQ6MZQ0 368 aa26.77■■□□□ 1.88
VTI1B-205ENST00000555543 TTLL7Q6ZT98 887 aa26.77■■□□□ 1.88
VTI1B-205ENST00000555543 CCDC24Q8N4L8 307 aa26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms