RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NFE2L2Q16236 605 aa21.28■■□□□ 1
CCDC88C-209ENST00000554872 MCM10Q7L590 875 aa21.28■■□□□ 1
CCDC88C-209ENST00000554872 KIAA1551Q9HCM1 1747 aa21.27■■□□□ 1
CCDC88C-209ENST00000554872 GPR162Q16538 588 aa21.27■■□□□ 1
CCDC88C-209ENST00000554872 PRKRIP1Q9H875 184 aaPredicted RBP21.27■■□□□ 1
CCDC88C-209ENST00000554872 EIF5P55010 431 aaKnown RBP21.26■□□□□ 0.99
CCDC88C-209ENST00000554872 NARFQ9UHQ1 456 aa21.26■□□□□ 0.99
CCDC88C-209ENST00000554872 MAPK8IP3Q9UPT6 1336 aa21.26■□□□□ 0.99
CCDC88C-209ENST00000554872 GRIN3BO60391 1043 aa21.25■□□□□ 0.99
CCDC88C-209ENST00000554872 TAF7Q15545 349 aaPredicted RBP21.25■□□□□ 0.99
CCDC88C-209ENST00000554872 SRP68Q9UHB9 627 aaKnown RBP21.25■□□□□ 0.99
CCDC88C-209ENST00000554872 KDM3BQ7LBC6 1761 aa21.24■□□□□ 0.99
CCDC88C-209ENST00000554872 ZPR1O75312 459 aa21.24■□□□□ 0.99
CCDC88C-209ENST00000554872 TGFB2P61812 414 aa21.24■□□□□ 0.99
CCDC88C-209ENST00000554872 FKBP8Q14318 412 aa21.24■□□□□ 0.99
CCDC88C-209ENST00000554872 PARP3Q9Y6F1 533 aa21.24■□□□□ 0.99
CCDC88C-209ENST00000554872 PXDNLA1KZ92 1463 aa21.24■□□□□ 0.99
CCDC88C-209ENST00000554872 SCN7AQ01118 1682 aa21.24■□□□□ 0.99
CCDC88C-209ENST00000554872 A0A087WZG4 1122 aa21.23■□□□□ 0.99
CCDC88C-209ENST00000554872 KCNQ3O43525 872 aa21.23■□□□□ 0.99
CCDC88C-209ENST00000554872 YBX3P16989 372 aaKnown RBP eCLIP21.23■□□□□ 0.99
CCDC88C-209ENST00000554872 TM4SF1P30408 202 aa21.23■□□□□ 0.99
CCDC88C-209ENST00000554872 IL6STP40189 918 aaPredicted RBP21.23■□□□□ 0.99
CCDC88C-209ENST00000554872 DCTN1Q14203 1278 aa21.23■□□□□ 0.99
CCDC88C-209ENST00000554872 PNISRQ8TF01 805 aaKnown RBP21.23■□□□□ 0.99
CCDC88C-209ENST00000554872 NRXN2Q9P2S2 1712 aa21.23■□□□□ 0.99
CCDC88C-209ENST00000554872 SNRPA1P09661 255 aaKnown RBP21.22■□□□□ 0.99
CCDC88C-209ENST00000554872 DDR1Q08345 913 aa21.21■□□□□ 0.99
CCDC88C-209ENST00000554872 USPL1Q5W0Q7 1092 aa21.21■□□□□ 0.99
CCDC88C-209ENST00000554872 LAMB4A4D0S4 1761 aa21.2■□□□□ 0.99
CCDC88C-209ENST00000554872 POLRMTO00411 1230 aaKnown RBP21.2■□□□□ 0.98
CCDC88C-209ENST00000554872 CANXP27824 592 aaKnown RBP21.19■□□□□ 0.98
CCDC88C-209ENST00000554872 BCL2L12Q9HB09 334 aa21.19■□□□□ 0.98
CCDC88C-209ENST00000554872 RGL2O15211 777 aa21.18■□□□□ 0.98
CCDC88C-209ENST00000554872 LMOD3Q0VAK6 560 aa21.18■□□□□ 0.98
CCDC88C-209ENST00000554872 BABAM1Q9NWV8 329 aa21.18■□□□□ 0.98
CCDC88C-209ENST00000554872 BRCA1P38398 1863 aaKnown RBP21.18■□□□□ 0.98
CCDC88C-209ENST00000554872 USP16Q9Y5T5 823 aa21.17■□□□□ 0.98
CCDC88C-209ENST00000554872 BCORQ6W2J9 1755 aa21.17■□□□□ 0.98
CCDC88C-209ENST00000554872 A1BGP04217 495 aa21.16■□□□□ 0.98
CCDC88C-209ENST00000554872 TMPOP42166 694 aaKnown RBP21.16■□□□□ 0.98
CCDC88C-209ENST00000554872 NFIXQ14938 502 aa21.16■□□□□ 0.98
CCDC88C-209ENST00000554872 PELP1Q8IZL8 1130 aaKnown RBP21.16■□□□□ 0.98
CCDC88C-209ENST00000554872 WDR43Q15061 677 aaKnown RBP eCLIP21.15■□□□□ 0.98
CCDC88C-209ENST00000554872 N4BP2Q86UW6 1770 aaPredicted RBP21.15■□□□□ 0.98
CCDC88C-209ENST00000554872 AFDNP55196 1824 aaKnown RBP21.14■□□□□ 0.97
CCDC88C-209ENST00000554872 RIPK4P57078 832 aa21.14■□□□□ 0.97
CCDC88C-209ENST00000554872 RUNDC1Q96C34 613 aa21.14■□□□□ 0.97
CCDC88C-209ENST00000554872 PRAMEF22A3QJZ6 481 aa21.13■□□□□ 0.97
CCDC88C-209ENST00000554872 EIF4A1P60842 406 aaKnown RBP21.13■□□□□ 0.97
CCDC88C-209ENST00000554872 GIGYF1O75420 1035 aaPredicted RBP21.12■□□□□ 0.97
CCDC88C-209ENST00000554872 CAMTA2O94983 1202 aa21.12■□□□□ 0.97
CCDC88C-209ENST00000554872 THUMPD2Q9BTF0 503 aaKnown RBP21.12■□□□□ 0.97
CCDC88C-209ENST00000554872 ADAMTS8Q9UP79 889 aa21.12■□□□□ 0.97
CCDC88C-209ENST00000554872 ZNF316A6NFI3 1004 aaPredicted RBP21.11■□□□□ 0.97
CCDC88C-209ENST00000554872 KCNA3P22001 575 aa21.11■□□□□ 0.97
CCDC88C-209ENST00000554872 NPM2Q86SE8 214 aaKnown RBP21.11■□□□□ 0.97
CCDC88C-209ENST00000554872 ZNF784Q8NCA9 323 aaPredicted RBP21.11■□□□□ 0.97
CCDC88C-209ENST00000554872 MIS18AQ9NYP9 233 aa21.11■□□□□ 0.97
CCDC88C-209ENST00000554872 CARMIL3Q8ND23 1372 aa21.1■□□□□ 0.97
CCDC88C-209ENST00000554872 DPEP1P16444 411 aa21.1■□□□□ 0.97
CCDC88C-209ENST00000554872 CLEC4GQ6UXB4 293 aa21.1■□□□□ 0.97
CCDC88C-209ENST00000554872 ARFGEF1Q9Y6D6 1849 aa21.1■□□□□ 0.97
CCDC88C-209ENST00000554872 ERBB4Q15303 1308 aa21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 A0A0G2JLW4 131 aa21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 NBPF26B4DH59 902 aa21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 SERPINB2P05120 415 aa21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 NBPF10Q6P3W6 841 aaKnown RBP21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 DZIP3Q86Y13 1208 aaKnown RBP21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 NBPF15Q8N660 670 aa21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 TBC1D2BQ9UPU7 963 aa21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 DLEC1Q9Y238 1755 aa21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 ADCY9O60503 1353 aa21.09■□□□□ 0.97
CCDC88C-209ENST00000554872 TBC1D9BQ66K14 1250 aa21.08■□□□□ 0.97
CCDC88C-209ENST00000554872 CCDC146Q8IYE0 955 aa21.07■□□□□ 0.96
CCDC88C-209ENST00000554872 TSPYL4Q9UJ04 414 aa21.07■□□□□ 0.96
CCDC88C-209ENST00000554872 TRIM35Q9UPQ4 493 aa21.07■□□□□ 0.96
CCDC88C-209ENST00000554872 PIM2Q9P1W9 311 aa21.06■□□□□ 0.96
CCDC88C-209ENST00000554872 PDZRN3Q9UPQ7 1066 aa21.06■□□□□ 0.96
CCDC88C-209ENST00000554872 ZNF652Q9Y2D9 606 aa21.06■□□□□ 0.96
CCDC88C-209ENST00000554872 ZNF330Q9Y3S2 320 aaPredicted RBP21.06■□□□□ 0.96
CCDC88C-209ENST00000554872 CHL1O00533 1208 aa21.04■□□□□ 0.96
CCDC88C-209ENST00000554872 SETDB2Q96T68 719 aa21.04■□□□□ 0.96
CCDC88C-209ENST00000554872 BCS1LQ9Y276 419 aa21.04■□□□□ 0.96
CCDC88C-209ENST00000554872 PIP4K2AP48426 406 aaPredicted RBP21.03■□□□□ 0.96
CCDC88C-209ENST00000554872 RRP7AQ9Y3A4 280 aaKnown RBP21.03■□□□□ 0.96
CCDC88C-209ENST00000554872 ANKRD31Q8N7Z5 1873 aa21.03■□□□□ 0.96
CCDC88C-209ENST00000554872 ERVV-1B6SEH8 477 aa21.02■□□□□ 0.96
CCDC88C-209ENST00000554872 DALRD3Q5D0E6 543 aaKnown RBP21.02■□□□□ 0.96
CCDC88C-209ENST00000554872 BRIP1Q9BX63 1249 aa21.02■□□□□ 0.96
CCDC88C-209ENST00000554872 CHRNA5P30532 468 aa21.01■□□□□ 0.95
CCDC88C-209ENST00000554872 PRR5LQ6MZQ0 368 aa21.01■□□□□ 0.95
CCDC88C-209ENST00000554872 ATP10DQ9P241 1426 aa21.01■□□□□ 0.95
CCDC88C-209ENST00000554872 BICDL1Q6ZP65 573 aa21■□□□□ 0.95
CCDC88C-209ENST00000554872 WWC3Q9ULE0 1092 aa21■□□□□ 0.95
CCDC88C-209ENST00000554872 HOXB7P09629 217 aa20.99■□□□□ 0.95
CCDC88C-209ENST00000554872 PDE6BP35913 854 aa20.99■□□□□ 0.95
CCDC88C-209ENST00000554872 NEUROD2Q15784 382 aa20.99■□□□□ 0.95
CCDC88C-209ENST00000554872 LRP10Q7Z4F1 713 aa20.99■□□□□ 0.95
CCDC88C-209ENST00000554872 CNBD1Q8NA66 436 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms