RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 CNGB1Q14028 1251 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-215ENST00000554656 ZBTB1Q9Y2K1 713 aa14.29□□□□□ -0.12
SHMT2-215ENST00000554656 COL15A1P39059 1388 aa14.29□□□□□ -0.12
SHMT2-215ENST00000554656 KIF3CO14782 793 aa14.28□□□□□ -0.12
SHMT2-215ENST00000554656 USPL1Q5W0Q7 1092 aa14.28□□□□□ -0.12
SHMT2-215ENST00000554656 ANKRD31Q8N7Z5 1873 aa14.27□□□□□ -0.12
SHMT2-215ENST00000554656 FCHSD2O94868 740 aa14.27□□□□□ -0.13
SHMT2-215ENST00000554656 BCL2L12Q9HB09 334 aa14.27□□□□□ -0.13
SHMT2-215ENST00000554656 CHRNA5P30532 468 aa14.26□□□□□ -0.13
SHMT2-215ENST00000554656 ARHGAP27Q6ZUM4 889 aa14.26□□□□□ -0.13
SHMT2-215ENST00000554656 IL17REQ8NFR9 667 aa14.26□□□□□ -0.13
SHMT2-215ENST00000554656 COL11A2P13942 1736 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-215ENST00000554656 U2SURPO15042 1029 aaKnown RBP14.25□□□□□ -0.13
SHMT2-215ENST00000554656 NFIXQ14938 502 aa14.25□□□□□ -0.13
SHMT2-215ENST00000554656 VSIG10Q8N0Z9 540 aa14.25□□□□□ -0.13
SHMT2-215ENST00000554656 NARFQ9UHQ1 456 aa14.25□□□□□ -0.13
SHMT2-215ENST00000554656 BCORQ6W2J9 1755 aa14.24□□□□□ -0.13
SHMT2-215ENST00000554656 CARMIL3Q8ND23 1372 aa14.24□□□□□ -0.13
SHMT2-215ENST00000554656 CEMIPQ8WUJ3 1361 aa14.24□□□□□ -0.13
SHMT2-215ENST00000554656 ZPR1O75312 459 aa14.24□□□□□ -0.13
SHMT2-215ENST00000554656 CCDC88AQ3V6T2 1871 aa14.23□□□□□ -0.13
SHMT2-215ENST00000554656 HSPA6P17066 643 aa14.23□□□□□ -0.13
SHMT2-215ENST00000554656 ZNF496Q96IT1 587 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-215ENST00000554656 PHACTR3Q96KR7 559 aa14.23□□□□□ -0.13
SHMT2-215ENST00000554656 PIM2Q9P1W9 311 aa14.23□□□□□ -0.13
SHMT2-215ENST00000554656 HEG1Q9ULI3 1381 aa14.22□□□□□ -0.13
SHMT2-215ENST00000554656 GNAT3A8MTJ3 354 aa14.22□□□□□ -0.13
SHMT2-215ENST00000554656 CANXP27824 592 aaKnown RBP14.22□□□□□ -0.13
SHMT2-215ENST00000554656 EIF5P55010 431 aaKnown RBP14.22□□□□□ -0.13
SHMT2-215ENST00000554656 DALRD3Q5D0E6 543 aaKnown RBP14.22□□□□□ -0.13
SHMT2-215ENST00000554656 C9orf131Q5VYM1 1079 aa14.22□□□□□ -0.13
SHMT2-215ENST00000554656 GAS2L2Q8NHY3 880 aa14.22□□□□□ -0.13
SHMT2-215ENST00000554656 RSPH6AQ9H0K4 717 aa14.22□□□□□ -0.13
SHMT2-215ENST00000554656 NMRK2Q9NPI5 230 aa14.22□□□□□ -0.13
SHMT2-215ENST00000554656 ZNF790Q6PG37 636 aa14.21□□□□□ -0.13
SHMT2-215ENST00000554656 TIAM2Q8IVF5 1701 aa14.21□□□□□ -0.14
SHMT2-215ENST00000554656 TNRC6CQ9HCJ0 1690 aaKnown RBP14.2□□□□□ -0.14
SHMT2-215ENST00000554656 DLG5Q8TDM6 1919 aa14.2□□□□□ -0.14
SHMT2-215ENST00000554656 KCNQ3O43525 872 aa14.2□□□□□ -0.14
SHMT2-215ENST00000554656 PRKAR2BP31323 418 aa14.2□□□□□ -0.14
SHMT2-215ENST00000554656 TEFQ10587 303 aa14.2□□□□□ -0.14
SHMT2-215ENST00000554656 TTC5Q8N0Z6 440 aa14.2□□□□□ -0.14
SHMT2-215ENST00000554656 CACNA1SQ13698 1873 aa14.2□□□□□ -0.14
SHMT2-215ENST00000554656 SERPINB2P05120 415 aa14.19□□□□□ -0.14
SHMT2-215ENST00000554656 STARD3NLO95772 234 aa14.18□□□□□ -0.14
SHMT2-215ENST00000554656 PPP2R1AP30153 589 aa14.18□□□□□ -0.14
SHMT2-215ENST00000554656 PRELPP51888 382 aa14.18□□□□□ -0.14
SHMT2-215ENST00000554656 RASSF7Q02833 373 aa14.18□□□□□ -0.14
SHMT2-215ENST00000554656 RNF181Q9P0P0 153 aa14.18□□□□□ -0.14
SHMT2-215ENST00000554656 WDR90Q96KV7 1748 aa14.18□□□□□ -0.14
SHMT2-215ENST00000554656 ARFGEF2Q9Y6D5 1785 aa14.17□□□□□ -0.14
SHMT2-215ENST00000554656 FER1L6Q2WGJ9 1857 aa14.17□□□□□ -0.14
SHMT2-215ENST00000554656 A1BGP04217 495 aa14.17□□□□□ -0.14
SHMT2-215ENST00000554656 TBC1D9BQ66K14 1250 aa14.17□□□□□ -0.14
SHMT2-215ENST00000554656 DICER1Q9UPY3 1922 aaKnown RBP14.16□□□□□ -0.14
SHMT2-215ENST00000554656 PRAMEF22A3QJZ6 481 aa14.16□□□□□ -0.14
SHMT2-215ENST00000554656 DIEXFQ68CQ4 756 aaKnown RBP14.16□□□□□ -0.14
SHMT2-215ENST00000554656 BICDL1Q6ZP65 573 aa14.16□□□□□ -0.14
SHMT2-215ENST00000554656 CFAP53Q96M91 514 aa14.16□□□□□ -0.14
SHMT2-215ENST00000554656 FMNL2Q96PY5 1086 aa14.16□□□□□ -0.14
SHMT2-215ENST00000554656 TBC1D2BQ9UPU7 963 aa14.16□□□□□ -0.14
SHMT2-215ENST00000554656 LAMB4A4D0S4 1761 aa14.16□□□□□ -0.14
SHMT2-215ENST00000554656 KDM3BQ7LBC6 1761 aa14.15□□□□□ -0.14
SHMT2-215ENST00000554656 TOMM70O94826 608 aa14.15□□□□□ -0.14
SHMT2-215ENST00000554656 CAMTA2O94983 1202 aa14.15□□□□□ -0.14
SHMT2-215ENST00000554656 C2CD5Q86YS7 1000 aa14.15□□□□□ -0.14
SHMT2-215ENST00000554656 SLX4Q8IY92 1834 aa14.15□□□□□ -0.14
SHMT2-215ENST00000554656 A0A087WZG4 1122 aa14.14□□□□□ -0.15
SHMT2-215ENST00000554656 BTBD11A6QL63 1104 aa14.14□□□□□ -0.15
SHMT2-215ENST00000554656 U2AF1L5P0DN76 240 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-215ENST00000554656 IL6STP40189 918 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-215ENST00000554656 PIP4K2AP48426 406 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-215ENST00000554656 U2AF1Q01081 240 aaKnown RBP eCLIP14.14□□□□□ -0.15
SHMT2-215ENST00000554656 MCM10Q7L590 875 aa14.14□□□□□ -0.15
SHMT2-215ENST00000554656 CCDC24Q8N4L8 307 aa14.14□□□□□ -0.15
SHMT2-215ENST00000554656 TEX13AQ9BXU3 409 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-215ENST00000554656 ZNF330Q9Y3S2 320 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-215ENST00000554656 USP16Q9Y5T5 823 aa14.14□□□□□ -0.15
SHMT2-215ENST00000554656 NFKBIEO00221 500 aa14.13□□□□□ -0.15
SHMT2-215ENST00000554656 DCTN1Q14203 1278 aa14.13□□□□□ -0.15
SHMT2-215ENST00000554656 PRR5LQ6MZQ0 368 aa14.13□□□□□ -0.15
SHMT2-215ENST00000554656 TTLL6Q8N841 843 aa14.13□□□□□ -0.15
SHMT2-215ENST00000554656 RBM46Q8TBY0 533 aaKnown RBP14.12□□□□□ -0.15
SHMT2-215ENST00000554656 NUDCQ9Y266 331 aa14.12□□□□□ -0.15
SHMT2-215ENST00000554656 H0YIN7 160 aa14.11□□□□□ -0.15
SHMT2-215ENST00000554656 DNAJC5GQ8N7S2 189 aa14.11□□□□□ -0.15
SHMT2-215ENST00000554656 KDM2BQ8NHM5 1336 aa14.11□□□□□ -0.15
SHMT2-215ENST00000554656 APLP1P51693 650 aa14.1□□□□□ -0.15
SHMT2-215ENST00000554656 DZIP3Q86Y13 1208 aaKnown RBP14.1□□□□□ -0.15
SHMT2-215ENST00000554656 BRIP1Q9BX63 1249 aa14.1□□□□□ -0.15
SHMT2-215ENST00000554656 RRAGCQ9HB90 399 aa14.1□□□□□ -0.15
SHMT2-215ENST00000554656 ZC3H4Q9UPT8 1303 aaKnown RBP14.1□□□□□ -0.15
SHMT2-215ENST00000554656 NBPF26B4DH59 902 aa14.09□□□□□ -0.15
SHMT2-215ENST00000554656 LMNB1P20700 586 aa14.09□□□□□ -0.15
SHMT2-215ENST00000554656 NBPF10Q6P3W6 841 aaKnown RBP14.09□□□□□ -0.15
SHMT2-215ENST00000554656 NBPF15Q8N660 670 aa14.09□□□□□ -0.15
SHMT2-215ENST00000554656 NUP98P52948 1817 aa14.08□□□□□ -0.15
SHMT2-215ENST00000554656 SNRPA1P09661 255 aaKnown RBP14.08□□□□□ -0.16
SHMT2-215ENST00000554656 HTRA3P83110 453 aa14.08□□□□□ -0.16
SHMT2-215ENST00000554656 CNBD1Q8NA66 436 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms