RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NAP1L2Q9ULW6 460 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-207ENST00000553837 LRRFIP2Q9Y608 721 aaKnown RBP14.93□□□□□ -0.02
SHMT2-207ENST00000553837 EIF4A1P60842 406 aaKnown RBP14.92□□□□□ -0.02
SHMT2-207ENST00000553837 ATP8B2P98198 1209 aa14.92□□□□□ -0.02
SHMT2-207ENST00000553837 N4BP2Q86UW6 1770 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-207ENST00000553837 NPHP4O75161 1426 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-207ENST00000553837 CACNA1FO60840 1977 aa14.92□□□□□ -0.02
SHMT2-207ENST00000553837 BAG4O95429 457 aaKnown RBP14.92□□□□□ -0.02
SHMT2-207ENST00000553837 SSFA2P28290 1259 aa14.92□□□□□ -0.02
SHMT2-207ENST00000553837 OSBPL3Q9H4L5 887 aa14.92□□□□□ -0.02
SHMT2-207ENST00000553837 SOS1Q07889 1333 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-207ENST00000553837 GCP02774 474 aa14.91□□□□□ -0.02
SHMT2-207ENST00000553837 GNAI3P08754 354 aa14.91□□□□□ -0.02
SHMT2-207ENST00000553837 EIF2S2P20042 333 aaKnown RBP14.91□□□□□ -0.02
SHMT2-207ENST00000553837 PDLIM2Q96JY6 352 aa14.91□□□□□ -0.02
SHMT2-207ENST00000553837 PXDNQ92626 1479 aa14.91□□□□□ -0.02
SHMT2-207ENST00000553837 PHRF1Q9P1Y6 1649 aaKnown RBP14.91□□□□□ -0.02
SHMT2-207ENST00000553837 KDM3BQ7LBC6 1761 aa14.91□□□□□ -0.02
SHMT2-207ENST00000553837 MPRIPQ6WCQ1 1025 aa14.91□□□□□ -0.02
SHMT2-207ENST00000553837 ARHGEF25Q86VW2 580 aa14.91□□□□□ -0.02
SHMT2-207ENST00000553837 KCNH5Q8NCM2 988 aa14.91□□□□□ -0.02
SHMT2-207ENST00000553837 IPO4Q8TEX9 1081 aaKnown RBP14.91□□□□□ -0.02
SHMT2-207ENST00000553837 GTF2E1P29083 439 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-207ENST00000553837 TUBGCP6Q96RT7 1819 aa14.9□□□□□ -0.02
SHMT2-207ENST00000553837 PXDNLA1KZ92 1463 aa14.9□□□□□ -0.02
SHMT2-207ENST00000553837 ANXA1P04083 346 aa14.9□□□□□ -0.02
SHMT2-207ENST00000553837 ZNF530Q6P9A1 599 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-207ENST00000553837 CHPF2Q9P2E5 772 aa14.9□□□□□ -0.02
SHMT2-207ENST00000553837 AXIN2Q9Y2T1 843 aa14.9□□□□□ -0.02
SHMT2-207ENST00000553837 LMO7Q8WWI1 1683 aa14.89□□□□□ -0.03
SHMT2-207ENST00000553837 LRRCC1Q9C099 1032 aa14.89□□□□□ -0.03
SHMT2-207ENST00000553837 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.89□□□□□ -0.03
SHMT2-207ENST00000553837 ZKSCAN5Q9Y2L8 839 aa14.89□□□□□ -0.03
SHMT2-207ENST00000553837 SLIT3O75094 1523 aa14.89□□□□□ -0.03
SHMT2-207ENST00000553837 ZSCAN23Q3MJ62 389 aa14.88□□□□□ -0.03
SHMT2-207ENST00000553837 SASS6Q6UVJ0 657 aa14.88□□□□□ -0.03
SHMT2-207ENST00000553837 NUCB2P80303 420 aa14.88□□□□□ -0.03
SHMT2-207ENST00000553837 RABEP1Q15276 862 aa14.88□□□□□ -0.03
SHMT2-207ENST00000553837 NCAPD2Q15021 1401 aa14.87□□□□□ -0.03
SHMT2-207ENST00000553837 AKAP4Q5JQC9 854 aa14.87□□□□□ -0.03
SHMT2-207ENST00000553837 LMOD2Q6P5Q4 547 aa14.87□□□□□ -0.03
SHMT2-207ENST00000553837 RBSNQ9H1K0 784 aa14.87□□□□□ -0.03
SHMT2-207ENST00000553837 CCDC39Q9UFE4 941 aa14.87□□□□□ -0.03
SHMT2-207ENST00000553837 TRPM3Q9HCF6 1732 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-207ENST00000553837 UBTFL1P0CB47 393 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-207ENST00000553837 CAVIN1Q6NZI2 390 aaKnown RBP14.87□□□□□ -0.03
SHMT2-207ENST00000553837 ANKRD24Q8TF21 1146 aa14.87□□□□□ -0.03
SHMT2-207ENST00000553837 BTBD11A6QL63 1104 aa14.86□□□□□ -0.03
SHMT2-207ENST00000553837 RNMTO43148 476 aaKnown RBP14.86□□□□□ -0.03
SHMT2-207ENST00000553837 NBPF7P0C2Y1 421 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-207ENST00000553837 MX1P20591 662 aa14.86□□□□□ -0.03
SHMT2-207ENST00000553837 MCTP1Q6DN14 999 aa14.86□□□□□ -0.03
SHMT2-207ENST00000553837 SSH3Q8TE77 659 aa14.86□□□□□ -0.03
SHMT2-207ENST00000553837 PRAMEF22A3QJZ6 481 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 ERC2O15083 957 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 PLEKHO1Q53GL0 409 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-207ENST00000553837 BEND3Q5T5X7 828 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 UNC5CLQ8IV45 518 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 ADCY9O60503 1353 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 PI4KAP2A4QPH2 592 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 TEFQ10587 303 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 CASC1Q6TDU7 716 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 PPP1R42Q7Z4L9 355 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 PI4KAP1Q8N8J0 262 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 SRCIN1Q9C0H9 1055 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 IL1RAPL2Q9NP60 686 aa14.85□□□□□ -0.03
SHMT2-207ENST00000553837 DMTNQ08495 405 aa14.84□□□□□ -0.03
SHMT2-207ENST00000553837 PROSER3Q2NL68 480 aa14.84□□□□□ -0.03
SHMT2-207ENST00000553837 KRT28Q7Z3Y7 464 aa14.84□□□□□ -0.03
SHMT2-207ENST00000553837 CCDC94Q9BW85 323 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-207ENST00000553837 LMBRD1Q9NUN5 540 aa14.84□□□□□ -0.03
SHMT2-207ENST00000553837 STAP2Q9UGK3 403 aa14.84□□□□□ -0.03
SHMT2-207ENST00000553837 RGPD5Q99666 1765 aa14.84□□□□□ -0.03
SHMT2-207ENST00000553837 HOXB7P09629 217 aa14.84□□□□□ -0.03
SHMT2-207ENST00000553837 POLA2Q14181 598 aa14.84□□□□□ -0.03
SHMT2-207ENST00000553837 PROSER2Q86WR7 435 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-207ENST00000553837 C1orf167Q5SNV9 1468 aa14.83□□□□□ -0.04
SHMT2-207ENST00000553837 DNAAF4Q8WXU2 420 aa14.83□□□□□ -0.04
SHMT2-207ENST00000553837 AK9Q5TCS8 1911 aa14.83□□□□□ -0.04
SHMT2-207ENST00000553837 REC8O95072 547 aa14.83□□□□□ -0.04
SHMT2-207ENST00000553837 PRIM1P49642 420 aaKnown RBP14.83□□□□□ -0.04
SHMT2-207ENST00000553837 AMOTQ4VCS5 1084 aa14.83□□□□□ -0.04
SHMT2-207ENST00000553837 NUTM1Q86Y26 1132 aa14.83□□□□□ -0.04
SHMT2-207ENST00000553837 ESYT1Q9BSJ8 1104 aa14.83□□□□□ -0.04
SHMT2-207ENST00000553837 IL25Q9H293 177 aa14.83□□□□□ -0.04
SHMT2-207ENST00000553837 CAMTA1Q9Y6Y1 1673 aa14.82□□□□□ -0.04
SHMT2-207ENST00000553837 CHMLP26374 656 aa14.82□□□□□ -0.04
SHMT2-207ENST00000553837 DDX17Q92841 729 aaKnown RBP14.82□□□□□ -0.04
SHMT2-207ENST00000553837 RILPL2Q969X0 211 aa14.81□□□□□ -0.04
SHMT2-207ENST00000553837 CWC22Q9HCG8 908 aaKnown RBP14.81□□□□□ -0.04
SHMT2-207ENST00000553837 HEG1Q9ULI3 1381 aa14.81□□□□□ -0.04
SHMT2-207ENST00000553837 GIGYF1O75420 1035 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-207ENST00000553837 SURF6O75683 361 aaKnown RBP14.81□□□□□ -0.04
SHMT2-207ENST00000553837 KIF20AO95235 890 aa14.81□□□□□ -0.04
SHMT2-207ENST00000553837 ZC3H6P61129 1189 aaKnown RBP14.81□□□□□ -0.04
SHMT2-207ENST00000553837 PKP1Q13835 747 aa14.81□□□□□ -0.04
SHMT2-207ENST00000553837 C1orf141Q5JVX7 400 aa14.81□□□□□ -0.04
SHMT2-207ENST00000553837 PALD1Q9ULE6 856 aa14.81□□□□□ -0.04
SHMT2-207ENST00000553837 LMTK3Q96Q04 1460 aa14.81□□□□□ -0.04
SHMT2-207ENST00000553837 TRIM6-TRIM34B2RNG4 842 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms