RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 STK17AQ9UEE5 414 aa7.84□□□□□ -1.15
VIPAS39-204ENST00000553576 NRKQ7Z2Y5 1582 aa7.84□□□□□ -1.15
VIPAS39-204ENST00000553576 NALCNQ8IZF0 1738 aa7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 IL16Q14005 1332 aa7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 PRR36Q9H6K5 1346 aa7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 WFS1O76024 890 aa7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 CT47B1P0C2W7 299 aaPredicted RBP7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 U2AF1L5P0DN76 240 aaPredicted RBP7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 U2AF1Q01081 240 aaKnown RBP eCLIP7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 PLA2G2CQ5R387 149 aa7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 CRIPAKQ8N1N5 446 aa7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 AMOTL2Q9Y2J4 779 aa7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 RBM19Q9Y4C8 960 aaKnown RBP7.83□□□□□ -1.16
VIPAS39-204ENST00000553576 DLG5Q8TDM6 1919 aa7.82□□□□□ -1.16
VIPAS39-204ENST00000553576 TMPOP42166 694 aaKnown RBP7.82□□□□□ -1.16
VIPAS39-204ENST00000553576 PDE3AQ14432 1141 aa7.82□□□□□ -1.16
VIPAS39-204ENST00000553576 SSH2Q76I76 1423 aa7.82□□□□□ -1.16
VIPAS39-204ENST00000553576 CDK12Q9NYV4 1490 aaPredicted RBP7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 AAMPQ13685 434 aa7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 E2F4Q16254 413 aa7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 COG3Q96JB2 828 aa7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 SLC26A8Q96RN1 970 aa7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 PKD2L1Q9P0L9 805 aa7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 DACH1Q9UI36 760 aa7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 USP54Q70EL1 1684 aa7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 FMN2Q9NZ56 1722 aa7.81□□□□□ -1.16
VIPAS39-204ENST00000553576 ACEP12821 1306 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 TTC21BQ7Z4L5 1316 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 TTC21AQ8NDW8 1320 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 ACTN4O43707 911 aaKnown RBP7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 PLIN1O60240 522 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 ADH1BP00325 375 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 IL13P35225 146 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 CRBNQ96SW2 442 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 MYH16Q9H6N6 1097 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 USP31Q70CQ4 1352 aa7.8□□□□□ -1.16
VIPAS39-204ENST00000553576 OVOS2A0A0J9YW53 1432 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 USP6P35125 1406 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 OVOS2Q6IE36 1432 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 ANKARQ7Z5J8 1434 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 WIPF1O43516 503 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 NFX1Q12986 1120 aaKnown RBP7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 LMOD2Q6P5Q4 547 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 ANKLE2Q86XL3 938 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 NME9Q86XW9 330 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 RSPH6AQ9H0K4 717 aa7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 GMPR2Q9P2T1 348 aaKnown RBP7.79□□□□□ -1.16
VIPAS39-204ENST00000553576 LRRC7Q96NW7 1537 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 TCERG1O14776 1098 aaKnown RBP7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 U2SURPO15042 1029 aaKnown RBP7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 AVPP01185 164 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 RARSP54136 660 aaKnown RBP7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 FOXC1Q12948 553 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 NEUROD2Q15784 382 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 KMT5BQ4FZB7 885 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 C20orf194Q5TEA3 1177 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 RGPD1P0DJD0 1748 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 FANCIQ9NVI1 1328 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 MAPK8IP3Q9UPT6 1336 aa7.78□□□□□ -1.16
VIPAS39-204ENST00000553576 BCAR3O75815 825 aa7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 MS4A1P11836 297 aa7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 DNAJB2P25686 324 aa7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 BRPF1P55201 1214 aaPredicted RBP7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 RIPK4P57078 832 aa7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 INSM1Q01101 510 aaPredicted RBP7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 ZNF428Q96B54 188 aa7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 SLC6A16Q9GZN6 736 aa7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 RRP7AQ9Y3A4 280 aaKnown RBP7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 KDM2BQ8NHM5 1336 aa7.77□□□□□ -1.17
VIPAS39-204ENST00000553576 MARF1Q9Y4F3 1742 aaKnown RBP7.76□□□□□ -1.17
VIPAS39-204ENST00000553576 NEFMP07197 916 aa7.76□□□□□ -1.17
VIPAS39-204ENST00000553576 CFHP08603 1231 aa7.76□□□□□ -1.17
VIPAS39-204ENST00000553576 FBLN1P23142 703 aa7.76□□□□□ -1.17
VIPAS39-204ENST00000553576 NFE2L2Q16236 605 aa7.76□□□□□ -1.17
VIPAS39-204ENST00000553576 TMEM134Q9H6X4 195 aa7.76□□□□□ -1.17
VIPAS39-204ENST00000553576 EMILIN1Q9Y6C2 1016 aa7.76□□□□□ -1.17
VIPAS39-204ENST00000553576 KIF24Q5T7B8 1368 aa7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 NR1I2O75469 434 aa7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 KCNA6P17658 529 aa7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 CALD1Q05682 793 aaKnown RBP7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 CENPQQ7L2Z9 268 aaPredicted RBP7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 TOR4AQ9NXH8 423 aa7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 CACNA1FO60840 1977 aa7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 PEAK1Q9H792 1746 aa7.75□□□□□ -1.17
VIPAS39-204ENST00000553576 PIK3C2AO00443 1686 aa7.74□□□□□ -1.17
VIPAS39-204ENST00000553576 AXIN1O15169 862 aa7.74□□□□□ -1.17
VIPAS39-204ENST00000553576 ZNF853P0CG23 659 aa7.74□□□□□ -1.17
VIPAS39-204ENST00000553576 PRKAR2BP31323 418 aa7.74□□□□□ -1.17
VIPAS39-204ENST00000553576 LMOD3Q0VAK6 560 aa7.74□□□□□ -1.17
VIPAS39-204ENST00000553576 ALDH1L2Q3SY69 923 aa7.74□□□□□ -1.17
VIPAS39-204ENST00000553576 NWD1Q149M9 1564 aa7.73□□□□□ -1.17
VIPAS39-204ENST00000553576 PPM1GO15355 546 aaPredicted RBP7.73□□□□□ -1.17
VIPAS39-204ENST00000553576 RRS1Q15050 365 aaKnown RBP7.73□□□□□ -1.17
VIPAS39-204ENST00000553576 CTC1Q2NKJ3 1217 aa7.73□□□□□ -1.17
VIPAS39-204ENST00000553576 NGDNQ8NEJ9 315 aaKnown RBP7.73□□□□□ -1.17
VIPAS39-204ENST00000553576 PHACTR3Q96KR7 559 aa7.73□□□□□ -1.17
VIPAS39-204ENST00000553576 NPHP4O75161 1426 aaPredicted RBP7.72□□□□□ -1.17
VIPAS39-204ENST00000553576 SMCPP49901 116 aaPredicted RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms