RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 CDCA7LQ96GN5 454 aa12.62□□□□□ -0.39
TMEM260-204ENST00000553335 BCL11BQ9C0K0 894 aaPredicted RBP12.62□□□□□ -0.39
TMEM260-204ENST00000553335 MIS18AQ9NYP9 233 aa12.62□□□□□ -0.39
TMEM260-204ENST00000553335 KCNQ2O43526 872 aa12.61□□□□□ -0.39
TMEM260-204ENST00000553335 ZNF790Q6PG37 636 aa12.61□□□□□ -0.39
TMEM260-204ENST00000553335 SMARCC1Q92922 1105 aaPredicted RBP12.61□□□□□ -0.39
TMEM260-204ENST00000553335 MBIPQ9NS73 344 aa12.61□□□□□ -0.39
TMEM260-204ENST00000553335 FANCIQ9NVI1 1328 aa12.61□□□□□ -0.39
TMEM260-204ENST00000553335 LY75O60449 1722 aa12.6□□□□□ -0.39
TMEM260-204ENST00000553335 TNS1Q9HBL0 1735 aaKnown RBP12.6□□□□□ -0.39
TMEM260-204ENST00000553335 TRIM37O94972 964 aa12.6□□□□□ -0.39
TMEM260-204ENST00000553335 SLC39A6Q13433 755 aa12.6□□□□□ -0.39
TMEM260-204ENST00000553335 CCDC125Q86Z20 511 aa12.6□□□□□ -0.39
TMEM260-204ENST00000553335 TRMT2AQ8IZ69 625 aaKnown RBP12.6□□□□□ -0.39
TMEM260-204ENST00000553335 TSR2Q969E8 191 aaKnown RBP12.6□□□□□ -0.39
TMEM260-204ENST00000553335 SF3B2Q13435 895 aaKnown RBP12.59□□□□□ -0.39
TMEM260-204ENST00000553335 DUSP27Q5VZP5 1158 aa12.59□□□□□ -0.39
TMEM260-204ENST00000553335 FMNL2Q96PY5 1086 aa12.59□□□□□ -0.39
TMEM260-204ENST00000553335 ATG3Q9NT62 314 aa12.59□□□□□ -0.39
TMEM260-204ENST00000553335 LAMB4A4D0S4 1761 aa12.58□□□□□ -0.39
TMEM260-204ENST00000553335 ZNF831Q5JPB2 1677 aa12.58□□□□□ -0.4
TMEM260-204ENST00000553335 EIF4A1P60842 406 aaKnown RBP12.58□□□□□ -0.4
TMEM260-204ENST00000553335 ASAP1Q9ULH1 1129 aa12.58□□□□□ -0.4
TMEM260-204ENST00000553335 KCPQ6ZWJ8 1503 aa12.57□□□□□ -0.4
TMEM260-204ENST00000553335 RGPD3A6NKT7 1758 aaPredicted RBP12.57□□□□□ -0.4
TMEM260-204ENST00000553335 RGPD4Q7Z3J3 1758 aa12.57□□□□□ -0.4
TMEM260-204ENST00000553335 KCNQ3O43525 872 aa12.57□□□□□ -0.4
TMEM260-204ENST00000553335 EXOSC9Q06265 439 aaKnown RBP12.57□□□□□ -0.4
TMEM260-204ENST00000553335 CHMP4AQ9BY43 222 aa12.57□□□□□ -0.4
TMEM260-204ENST00000553335 C5P01031 1676 aa12.57□□□□□ -0.4
TMEM260-204ENST00000553335 SOS1Q07889 1333 aaPredicted RBP12.57□□□□□ -0.4
TMEM260-204ENST00000553335 PALLDQ8WX93 1383 aa12.56□□□□□ -0.4
TMEM260-204ENST00000553335 CICQ96RK0 1608 aaPredicted RBP12.56□□□□□ -0.4
TMEM260-204ENST00000553335 PTCD1O75127 700 aaKnown RBP12.56□□□□□ -0.4
TMEM260-204ENST00000553335 CACNA1FO60840 1977 aa12.56□□□□□ -0.4
TMEM260-204ENST00000553335 HEG1Q9ULI3 1381 aa12.56□□□□□ -0.4
TMEM260-204ENST00000553335 TJP1Q07157 1748 aa12.55□□□□□ -0.4
TMEM260-204ENST00000553335 APBA3O96018 575 aa12.55□□□□□ -0.4
TMEM260-204ENST00000553335 HOXB7P09629 217 aa12.55□□□□□ -0.4
TMEM260-204ENST00000553335 SNRPA1P09661 255 aaKnown RBP12.55□□□□□ -0.4
TMEM260-204ENST00000553335 CT47B1P0C2W7 299 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-204ENST00000553335 HMGB2P26583 209 aaKnown RBP12.55□□□□□ -0.4
TMEM260-204ENST00000553335 TWISTNBQ3B726 338 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-204ENST00000553335 PTF1AQ7RTS3 328 aa12.55□□□□□ -0.4
TMEM260-204ENST00000553335 ZNF496Q96IT1 587 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-204ENST00000553335 TEX13AQ9BXU3 409 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-204ENST00000553335 TAF1LQ8IZX4 1826 aa12.55□□□□□ -0.4
TMEM260-204ENST00000553335 ELL2O00472 640 aaPredicted RBP12.54□□□□□ -0.4
TMEM260-204ENST00000553335 PLSCR1O15162 318 aa12.54□□□□□ -0.4
TMEM260-204ENST00000553335 C8orf58Q8NAV2 365 aa12.54□□□□□ -0.4
TMEM260-204ENST00000553335 COL5A3P25940 1745 aaPredicted RBP12.54□□□□□ -0.4
TMEM260-204ENST00000553335 LOC102724428A0A0B4J2F2 783 aa12.53□□□□□ -0.4
TMEM260-204ENST00000553335 STK25O00506 426 aa12.53□□□□□ -0.4
TMEM260-204ENST00000553335 GIGYF1O75420 1035 aaPredicted RBP12.53□□□□□ -0.4
TMEM260-204ENST00000553335 CENPBP07199 599 aaPredicted RBP12.53□□□□□ -0.4
TMEM260-204ENST00000553335 ATP6V1AP38606 617 aa12.53□□□□□ -0.4
TMEM260-204ENST00000553335 SIK1P57059 783 aa12.53□□□□□ -0.4
TMEM260-204ENST00000553335 ZNF428Q96B54 188 aa12.53□□□□□ -0.4
TMEM260-204ENST00000553335 SGIP1Q9BQI5 828 aa12.53□□□□□ -0.4
TMEM260-204ENST00000553335 EP400Q96L91 3159 aa12.52□□□□□ -0.41
TMEM260-204ENST00000553335 PYGBP11216 843 aa12.52□□□□□ -0.41
TMEM260-204ENST00000553335 BAG6P46379 1132 aa12.52□□□□□ -0.41
TMEM260-204ENST00000553335 KRT24Q2M2I5 525 aa12.52□□□□□ -0.41
TMEM260-204ENST00000553335 TSPYL6Q8N831 410 aa12.52□□□□□ -0.41
TMEM260-204ENST00000553335 CCNL1Q9UK58 526 aaPredicted RBP12.52□□□□□ -0.41
TMEM260-204ENST00000553335 VAMP4O75379 141 aa12.51□□□□□ -0.41
TMEM260-204ENST00000553335 STARD3NLO95772 234 aa12.51□□□□□ -0.41
TMEM260-204ENST00000553335 EIF2S2P20042 333 aaKnown RBP12.51□□□□□ -0.41
TMEM260-204ENST00000553335 SLC27A3Q5K4L6 730 aa12.51□□□□□ -0.41
TMEM260-204ENST00000553335 HDGFL1Q5TGJ6 251 aa12.51□□□□□ -0.41
TMEM260-204ENST00000553335 CCDC30Q5VVM6 783 aa12.5□□□□□ -0.41
TMEM260-204ENST00000553335 DNAJC10Q8IXB1 793 aa12.5□□□□□ -0.41
TMEM260-204ENST00000553335 USP16Q9Y5T5 823 aa12.5□□□□□ -0.41
TMEM260-204ENST00000553335 RREB1Q92766 1687 aa12.49□□□□□ -0.41
TMEM260-204ENST00000553335 PRAMEF22A3QJZ6 481 aa12.49□□□□□ -0.41
TMEM260-204ENST00000553335 TXNRD1Q16881 649 aa12.49□□□□□ -0.41
TMEM260-204ENST00000553335 ALDH1L2Q3SY69 923 aa12.49□□□□□ -0.41
TMEM260-204ENST00000553335 CHADLQ6NUI6 762 aa12.49□□□□□ -0.41
TMEM260-204ENST00000553335 DEFB132Q7Z7B7 95 aa12.49□□□□□ -0.41
TMEM260-204ENST00000553335 SLC4A9Q96Q91 983 aa12.49□□□□□ -0.41
TMEM260-204ENST00000553335 STK31Q9BXU1 1019 aa12.49□□□□□ -0.41
TMEM260-204ENST00000553335 C4BP0C0L5 1744 aa12.48□□□□□ -0.41
TMEM260-204ENST00000553335 ERBB4Q15303 1308 aa12.48□□□□□ -0.41
TMEM260-204ENST00000553335 NECTIN2Q92692 538 aa12.48□□□□□ -0.41
TMEM260-204ENST00000553335 DBF4Q9UBU7 674 aaPredicted RBP12.48□□□□□ -0.41
TMEM260-204ENST00000553335 GTPBP6O43824 516 aaPredicted RBP12.47□□□□□ -0.41
TMEM260-204ENST00000553335 CYP19A1P11511 503 aaPredicted RBP12.47□□□□□ -0.41
TMEM260-204ENST00000553335 EN1Q05925 392 aaPredicted RBP12.47□□□□□ -0.41
TMEM260-204ENST00000553335 ITPK1Q13572 414 aa12.47□□□□□ -0.41
TMEM260-204ENST00000553335 RCAN3Q9UKA8 241 aa12.47□□□□□ -0.41
TMEM260-204ENST00000553335 MYH14Q7Z406 1995 aaKnown RBP12.47□□□□□ -0.41
TMEM260-204ENST00000553335 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.46□□□□□ -0.41
TMEM260-204ENST00000553335 RARSP54136 660 aaKnown RBP12.46□□□□□ -0.41
TMEM260-204ENST00000553335 EZH2Q15910 746 aaKnown RBP12.46□□□□□ -0.41
TMEM260-204ENST00000553335 NPM2Q86SE8 214 aaKnown RBP12.46□□□□□ -0.41
TMEM260-204ENST00000553335 ZFP91Q96JP5 570 aaPredicted RBP12.46□□□□□ -0.41
TMEM260-204ENST00000553335 CAMKK2Q96RR4 588 aa12.46□□□□□ -0.41
TMEM260-204ENST00000553335 DDX21Q9NR30 783 aaKnown RBP eCLIP12.46□□□□□ -0.41
TMEM260-204ENST00000553335 SMC4Q9NTJ3 1288 aa12.46□□□□□ -0.41
TMEM260-204ENST00000553335 NUP188Q5SRE5 1749 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms