RNA–Protein interactions for RNA: ENST00000552773.1

RFX4-210, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 1,659 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-210ENST00000552773 SMARCA5O60264 1052 aaPredicted RBP12.7□□□□□ -0.38
RFX4-210ENST00000552773 SURF6O75683 361 aaKnown RBP12.7□□□□□ -0.38
RFX4-210ENST00000552773 MPRIPQ6WCQ1 1025 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 C16orf71Q8IYS4 520 aaPredicted RBP12.7□□□□□ -0.38
RFX4-210ENST00000552773 IFNL2Q8IZJ0 200 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 CNTROBQ8N137 903 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 RUFY2Q8WXA3 655 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 NECTIN2Q92692 538 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 LGR6Q9HBX8 967 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 DDX21Q9NR30 783 aaKnown RBP eCLIP12.7□□□□□ -0.38
RFX4-210ENST00000552773 C9orf78Q9NZ63 289 aaPredicted RBP12.7□□□□□ -0.38
RFX4-210ENST00000552773 SALL3Q9BXA9 1300 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 ADAMTS7Q9UKP4 1686 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 PI4KAP2A4QPH2 592 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 TRIM6-TRIM34B2RNG4 842 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 SRGAP3O43295 1099 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 LARP1Q6PKG0 1096 aaKnown RBP12.7□□□□□ -0.38
RFX4-210ENST00000552773 CLEC17AQ6ZS10 378 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 CLASRPQ8N2M8 674 aaKnown RBP12.7□□□□□ -0.38
RFX4-210ENST00000552773 PI4KAP1Q8N8J0 262 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 LINS1Q8NG48 757 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 LRRC59Q96AG4 307 aaKnown RBP12.7□□□□□ -0.38
RFX4-210ENST00000552773 BCL11AQ9H165 835 aa12.7□□□□□ -0.38
RFX4-210ENST00000552773 CPDO75976 1380 aa12.69□□□□□ -0.38
RFX4-210ENST00000552773 TMEM94Q12767 1356 aa12.69□□□□□ -0.38
RFX4-210ENST00000552773 HIP1O00291 1037 aa12.69□□□□□ -0.38
RFX4-210ENST00000552773 PPP1R42Q7Z4L9 355 aa12.69□□□□□ -0.38
RFX4-210ENST00000552773 DCAF5Q96JK2 942 aa12.69□□□□□ -0.38
RFX4-210ENST00000552773 ESYT1Q9BSJ8 1104 aa12.69□□□□□ -0.38
RFX4-210ENST00000552773 PHAXQ9H814 394 aaKnown RBP12.69□□□□□ -0.38
RFX4-210ENST00000552773 TNS3Q68CZ2 1445 aa12.69□□□□□ -0.38
RFX4-210ENST00000552773 PNMA6EA0A0J9YXQ4 647 aa12.68□□□□□ -0.38
RFX4-210ENST00000552773 TRAK2O60296 914 aa12.68□□□□□ -0.38
RFX4-210ENST00000552773 GLRX3O76003 335 aaKnown RBP12.68□□□□□ -0.38
RFX4-210ENST00000552773 CSB-PGBD3P0DP91 1061 aa12.68□□□□□ -0.38
RFX4-210ENST00000552773 OS9Q13438 667 aaPredicted RBP12.68□□□□□ -0.38
RFX4-210ENST00000552773 TTC5Q8N0Z6 440 aa12.68□□□□□ -0.38
RFX4-210ENST00000552773 RHPN1Q8TCX5 695 aa12.68□□□□□ -0.38
RFX4-210ENST00000552773 IL17RAQ96F46 866 aa12.68□□□□□ -0.38
RFX4-210ENST00000552773 NLRP2Q9NX02 1062 aa12.68□□□□□ -0.38
RFX4-210ENST00000552773 KIAA1211Q6ZU35 1233 aa12.67□□□□□ -0.38
RFX4-210ENST00000552773 SPRYD3Q8NCJ5 442 aa12.67□□□□□ -0.38
RFX4-210ENST00000552773 RBM33Q96EV2 1170 aaKnown RBP12.67□□□□□ -0.38
RFX4-210ENST00000552773 SLC52A2Q9HAB3 445 aa12.67□□□□□ -0.38
RFX4-210ENST00000552773 ERBB4Q15303 1308 aa12.67□□□□□ -0.38
RFX4-210ENST00000552773 USP42Q9H9J4 1324 aaKnown RBP12.67□□□□□ -0.38
RFX4-210ENST00000552773 GOLGA6L3A6NEY3 463 aa12.67□□□□□ -0.38
RFX4-210ENST00000552773 RILPL2Q969X0 211 aa12.67□□□□□ -0.38
RFX4-210ENST00000552773 UTYO14607 1347 aa12.66□□□□□ -0.38
RFX4-210ENST00000552773 PDIA4P13667 645 aaKnown RBP12.66□□□□□ -0.38
RFX4-210ENST00000552773 CHMLP26374 656 aa12.66□□□□□ -0.38
RFX4-210ENST00000552773 ZNF790Q6PG37 636 aa12.66□□□□□ -0.38
RFX4-210ENST00000552773 OTUD7AQ8TE49 926 aaPredicted RBP12.66□□□□□ -0.38
RFX4-210ENST00000552773 MAP3K2Q9Y2U5 619 aa12.66□□□□□ -0.38
RFX4-210ENST00000552773 SIPA1L3O60292 1781 aaPredicted RBP12.65□□□□□ -0.38
RFX4-210ENST00000552773 SNRPA1P09661 255 aaKnown RBP12.65□□□□□ -0.38
RFX4-210ENST00000552773 PHKG2P15735 406 aa12.65□□□□□ -0.38
RFX4-210ENST00000552773 XPCQ01831 940 aaPredicted RBP12.65□□□□□ -0.38
RFX4-210ENST00000552773 TNPO1Q92973 898 aaKnown RBP12.65□□□□□ -0.38
RFX4-210ENST00000552773 INTS4Q96HW7 963 aaKnown RBP12.65□□□□□ -0.38
RFX4-210ENST00000552773 FMNL2Q96PY5 1086 aa12.65□□□□□ -0.38
RFX4-210ENST00000552773 ADCY9O60503 1353 aa12.65□□□□□ -0.38
RFX4-210ENST00000552773 GRM8O00222 908 aa12.64□□□□□ -0.39
RFX4-210ENST00000552773 ZC3H6P61129 1189 aaKnown RBP12.64□□□□□ -0.39
RFX4-210ENST00000552773 RIC3Q7Z5B4 369 aa12.64□□□□□ -0.39
RFX4-210ENST00000552773 SPATA31A3Q5VYP0 1347 aa12.64□□□□□ -0.39
RFX4-210ENST00000552773 RGPD2P0DJD1 1756 aa12.64□□□□□ -0.39
RFX4-210ENST00000552773 IFIT2P09913 472 aaKnown RBP12.64□□□□□ -0.39
RFX4-210ENST00000552773 MRE11P49959 708 aa12.64□□□□□ -0.39
RFX4-210ENST00000552773 G3BP1Q13283 466 aaKnown RBP eCLIP12.64□□□□□ -0.39
RFX4-210ENST00000552773 TICAM2Q86XR7 235 aa12.64□□□□□ -0.39
RFX4-210ENST00000552773 ANO2Q9NQ90 1003 aa12.64□□□□□ -0.39
RFX4-210ENST00000552773 AXIN2Q9Y2T1 843 aa12.64□□□□□ -0.39
RFX4-210ENST00000552773 MRC1P22897 1456 aa12.63□□□□□ -0.39
RFX4-210ENST00000552773 NBPF7P0C2Y1 421 aaPredicted RBP12.63□□□□□ -0.39
RFX4-210ENST00000552773 ECHDC1Q9NTX5 307 aa12.63□□□□□ -0.39
RFX4-210ENST00000552773 COL15A1P39059 1388 aa12.63□□□□□ -0.39
RFX4-210ENST00000552773 PXDNQ92626 1479 aa12.63□□□□□ -0.39
RFX4-210ENST00000552773 SCN11AQ9UI33 1791 aa12.63□□□□□ -0.39
RFX4-210ENST00000552773 EVI5LQ96CN4 794 aa12.62□□□□□ -0.39
RFX4-210ENST00000552773 PCDH11XQ9BZA7 1347 aa12.61□□□□□ -0.39
RFX4-210ENST00000552773 PCDH11YQ9BZA8 1340 aa12.61□□□□□ -0.39
RFX4-210ENST00000552773 NEK4P51957 841 aa12.61□□□□□ -0.39
RFX4-210ENST00000552773 CABP4P57796 275 aa12.61□□□□□ -0.39
RFX4-210ENST00000552773 DIAPH3Q9NSV4 1193 aa12.61□□□□□ -0.39
RFX4-210ENST00000552773 RAD50Q92878 1312 aa12.61□□□□□ -0.39
RFX4-210ENST00000552773 KCNQ3O43525 872 aa12.61□□□□□ -0.39
RFX4-210ENST00000552773 METTL22Q9BUU2 404 aaPredicted RBP12.61□□□□□ -0.39
RFX4-210ENST00000552773 ERVV-2B6SEH9 535 aa12.6□□□□□ -0.39
RFX4-210ENST00000552773 HSPA4P34932 840 aa12.6□□□□□ -0.39
RFX4-210ENST00000552773 PI4K2BQ8TCG2 481 aa12.6□□□□□ -0.39
RFX4-210ENST00000552773 ANP32BQ92688 251 aaKnown RBP12.6□□□□□ -0.39
RFX4-210ENST00000552773 IL1RAPL2Q9NP60 686 aa12.6□□□□□ -0.39
RFX4-210ENST00000552773 RTN4Q9NQC3 1192 aaKnown RBP12.6□□□□□ -0.39
RFX4-210ENST00000552773 TUBGCP6Q96RT7 1819 aa12.59□□□□□ -0.39
RFX4-210ENST00000552773 COL18A1P39060 1754 aa12.59□□□□□ -0.39
RFX4-210ENST00000552773 PKD1L3Q7Z443 1732 aa12.59□□□□□ -0.39
RFX4-210ENST00000552773 PARP4Q9UKK3 1724 aaKnown RBP12.59□□□□□ -0.39
RFX4-210ENST00000552773 SGSM2O43147 1006 aa12.59□□□□□ -0.39
RFX4-210ENST00000552773 KLHL40Q2TBA0 621 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms