RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 TRIM28Q13263 835 aaKnown RBP4.46□□□□□ -1.7
LIMA1-207ENST00000551486 FOXD4L6Q3SYB3 417 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-207ENST00000551486 PRSS36Q5K4E3 855 aa4.46□□□□□ -1.7
LIMA1-207ENST00000551486 FOXD4L3Q6VB84 417 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-207ENST00000551486 TRIM11Q96F44 468 aa4.46□□□□□ -1.7
LIMA1-207ENST00000551486 DDRGK1Q96HY6 314 aa4.46□□□□□ -1.7
LIMA1-207ENST00000551486 GJA3Q9Y6H8 435 aa4.46□□□□□ -1.7
LIMA1-207ENST00000551486 NR1H3Q13133 447 aa4.45□□□□□ -1.7
LIMA1-207ENST00000551486 TMEM259Q4ZIN3 620 aa4.45□□□□□ -1.7
LIMA1-207ENST00000551486 PPARGC1BQ86YN6 1023 aaKnown RBP4.45□□□□□ -1.7
LIMA1-207ENST00000551486 AIDAQ96BJ3 306 aa4.45□□□□□ -1.7
LIMA1-207ENST00000551486 FHDC1Q9C0D6 1143 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-207ENST00000551486 SLC24A3Q9HC58 644 aa4.45□□□□□ -1.7
LIMA1-207ENST00000551486 KHNYNO15037 678 aaKnown RBP4.44□□□□□ -1.7
LIMA1-207ENST00000551486 MAPTP10636 758 aaKnown RBP4.44□□□□□ -1.7
LIMA1-207ENST00000551486 CD33P20138 364 aa4.44□□□□□ -1.7
LIMA1-207ENST00000551486 RFC5P40937 340 aa4.44□□□□□ -1.7
LIMA1-207ENST00000551486 TLR1Q15399 786 aa4.44□□□□□ -1.7
LIMA1-207ENST00000551486 ARSJQ5FYB0 599 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-207ENST00000551486 ZNF468Q5VIY5 522 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-207ENST00000551486 FCHSD1Q86WN1 690 aa4.44□□□□□ -1.7
LIMA1-207ENST00000551486 HRH3Q9Y5N1 445 aa4.44□□□□□ -1.7
LIMA1-207ENST00000551486 ELOA3CA0A087WX78 387 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-207ENST00000551486 DCDC2BA2VCK2 349 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 ELOA3DA6NLF2 546 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-207ENST00000551486 C9orf172C9J069 976 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 COBLO75128 1261 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 H2AFB1P0C5Y9 115 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 H2AFB2P0C5Z0 115 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 TATP17735 454 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-207ENST00000551486 TXKP42681 527 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 PLA2G4AP47712 749 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 PCBP4P57723 403 aaKnown RBP4.43□□□□□ -1.7
LIMA1-207ENST00000551486 TNP2Q05952 138 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 USP4Q13107 963 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 NBPF1Q3BBV0 1214 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 ELOA3BQ3SY89 546 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 FBXO31Q5XUX0 539 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-207ENST00000551486 ELOA3Q8NG57 546 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 SIRT1Q96EB6 747 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 NIFKQ9BYG3 293 aaKnown RBP4.43□□□□□ -1.7
LIMA1-207ENST00000551486 TRIM34Q9BYJ4 488 aa4.43□□□□□ -1.7
LIMA1-207ENST00000551486 ARID1BQ8NFD5 2236 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-207ENST00000551486 A0A1W2PNR3 127 aa4.42□□□□□ -1.7
LIMA1-207ENST00000551486 PAX4O43316 350 aa4.42□□□□□ -1.7
LIMA1-207ENST00000551486 HYAL3O43820 417 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-207ENST00000551486 DNAAF2Q9NVR5 837 aaKnown RBP4.42□□□□□ -1.7
LIMA1-207ENST00000551486 MARK1Q9P0L2 795 aa4.42□□□□□ -1.7
LIMA1-207ENST00000551486 KLF15Q9UIH9 416 aa4.42□□□□□ -1.7
LIMA1-207ENST00000551486 LAMC2Q13753 1193 aa4.41□□□□□ -1.7
LIMA1-207ENST00000551486 FAM157BP0CG42 384 aa4.4□□□□□ -1.71
LIMA1-207ENST00000551486 YBX3P16989 372 aaKnown RBP eCLIP4.4□□□□□ -1.71
LIMA1-207ENST00000551486 NRG1Q02297 640 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-207ENST00000551486 NEUROD1Q13562 356 aa4.4□□□□□ -1.71
LIMA1-207ENST00000551486 FAM229AH3BQW9 127 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 M0R082 166 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 APBB1O00213 710 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 ELNP15502 786 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 MCTP1Q6DN14 999 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 BICDL1Q6ZP65 573 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 SYT9Q86SS6 491 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 ZNF417Q8TAU3 575 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 PCMTD1Q96MG8 357 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-207ENST00000551486 ZNF587Q96SQ5 575 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-207ENST00000551486 ETNK1Q9HBU6 452 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 NEUROD4Q9HD90 331 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 PRDM6Q9NQX0 595 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 CEP126Q9P2H0 1117 aa4.39□□□□□ -1.71
LIMA1-207ENST00000551486 SIN3BO75182 1162 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 ATP4AP20648 1035 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 RAC1P63000 192 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 GRIK4Q16099 956 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 TRAPPC3LQ5T215 181 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 SAMD5Q5TGI4 173 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 TP53INP1Q96A56 240 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 CCDC85AQ96PX6 553 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-207ENST00000551486 CDCA7Q9BWT1 371 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-207ENST00000551486 FAM117AQ9C073 453 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 KDM4CQ9H3R0 1056 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 ZDHHC3Q9NYG2 299 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 DOLKQ9UPQ8 538 aa4.38□□□□□ -1.71
LIMA1-207ENST00000551486 ADARB2-AS1A8MUL3 147 aa4.37□□□□□ -1.71
LIMA1-207ENST00000551486 INHAP05111 366 aa4.37□□□□□ -1.71
LIMA1-207ENST00000551486 ADGRE1Q14246 886 aa4.37□□□□□ -1.71
LIMA1-207ENST00000551486 SLFNL1Q499Z3 407 aa4.37□□□□□ -1.71
LIMA1-207ENST00000551486 TXNRD3Q86VQ6 643 aa4.37□□□□□ -1.71
LIMA1-207ENST00000551486 GJD4Q96KN9 370 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-207ENST00000551486 SMTNP53814 917 aa4.36□□□□□ -1.71
LIMA1-207ENST00000551486 MICALL1Q8N3F8 863 aa4.36□□□□□ -1.71
LIMA1-207ENST00000551486 ZIC5Q96T25 663 aa4.36□□□□□ -1.71
LIMA1-207ENST00000551486 CABP1Q9NZU7 370 aa4.36□□□□□ -1.71
LIMA1-207ENST00000551486 NDUFB9Q9Y6M9 179 aa4.36□□□□□ -1.71
LIMA1-207ENST00000551486 LILRB5O75023 590 aa4.35□□□□□ -1.71
LIMA1-207ENST00000551486 GDF10P55107 478 aa4.35□□□□□ -1.71
LIMA1-207ENST00000551486 MBTPS1Q14703 1052 aa4.35□□□□□ -1.71
LIMA1-207ENST00000551486 OXLD1Q5BKU9 147 aa4.35□□□□□ -1.71
LIMA1-207ENST00000551486 LENG1Q96BZ8 264 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-207ENST00000551486 USP21Q9UK80 565 aa4.35□□□□□ -1.71
LIMA1-207ENST00000551486 RNF112Q9ULX5 631 aa4.35□□□□□ -1.71
LIMA1-207ENST00000551486 COL17A1Q9UMD9 1497 aaPredicted RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms