RNA–Protein interactions for RNA: ENST00000550519.5

SMARCC2-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, humanhuman

TSL 3

Gene SMARCC2, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC2-210ENST00000550519 COL15A1P39059 1388 aa29.27■■■□□ 2.28
SMARCC2-210ENST00000550519 CHRNA5P30532 468 aa29.26■■■□□ 2.27
SMARCC2-210ENST00000550519 NFIXQ14938 502 aa29.25■■■□□ 2.27
SMARCC2-210ENST00000550519 U2SURPO15042 1029 aaKnown RBP29.24■■■□□ 2.27
SMARCC2-210ENST00000550519 IL17REQ8NFR9 667 aa29.24■■■□□ 2.27
SMARCC2-210ENST00000550519 BCL2L12Q9HB09 334 aa29.24■■■□□ 2.27
SMARCC2-210ENST00000550519 VIRMAQ69YN4 1812 aaKnown RBP29.24■■■□□ 2.27
SMARCC2-210ENST00000550519 ARFGEF1Q9Y6D6 1849 aa29.23■■■□□ 2.27
SMARCC2-210ENST00000550519 CNGB1Q14028 1251 aaPredicted RBP29.23■■■□□ 2.27
SMARCC2-210ENST00000550519 C9orf131Q5VYM1 1079 aa29.23■■■□□ 2.27
SMARCC2-210ENST00000550519 GAS2L2Q8NHY3 880 aa29.23■■■□□ 2.27
SMARCC2-210ENST00000550519 TTC5Q8N0Z6 440 aa29.22■■■□□ 2.27
SMARCC2-210ENST00000550519 GNAT3A8MTJ3 354 aa29.21■■■□□ 2.27
SMARCC2-210ENST00000550519 UBR2Q8IWV8 1755 aa29.21■■■□□ 2.27
SMARCC2-210ENST00000550519 STARD3NLO95772 234 aa29.2■■■□□ 2.26
SMARCC2-210ENST00000550519 CANXP27824 592 aaKnown RBP29.2■■■□□ 2.26
SMARCC2-210ENST00000550519 TOMM70O94826 608 aa29.19■■■□□ 2.26
SMARCC2-210ENST00000550519 EIF5P55010 431 aaKnown RBP29.19■■■□□ 2.26
SMARCC2-210ENST00000550519 TEFQ10587 303 aa29.19■■■□□ 2.26
SMARCC2-210ENST00000550519 ZNF790Q6PG37 636 aa29.19■■■□□ 2.26
SMARCC2-210ENST00000550519 ZNF496Q96IT1 587 aaPredicted RBP29.19■■■□□ 2.26
SMARCC2-210ENST00000550519 NMRK2Q9NPI5 230 aa29.19■■■□□ 2.26
SMARCC2-210ENST00000550519 SERPINB2P05120 415 aa29.18■■■□□ 2.26
SMARCC2-210ENST00000550519 HEG1Q9ULI3 1381 aa29.16■■■□□ 2.26
SMARCC2-210ENST00000550519 TEX13AQ9BXU3 409 aaPredicted RBP29.16■■■□□ 2.26
SMARCC2-210ENST00000550519 NRXN2Q9P2S2 1712 aa29.16■■■□□ 2.26
SMARCC2-210ENST00000550519 RNF181Q9P0P0 153 aa29.15■■■□□ 2.26
SMARCC2-210ENST00000550519 CEMIPQ8WUJ3 1361 aa29.14■■■□□ 2.26
SMARCC2-210ENST00000550519 A0A087WZG4 1122 aa29.14■■■□□ 2.26
SMARCC2-210ENST00000550519 PHACTR3Q96KR7 559 aa29.14■■■□□ 2.26
SMARCC2-210ENST00000550519 AFDNP55196 1824 aaKnown RBP29.13■■■□□ 2.25
SMARCC2-210ENST00000550519 RSPH6AQ9H0K4 717 aa29.13■■■□□ 2.25
SMARCC2-210ENST00000550519 CFAP53Q96M91 514 aa29.12■■■□□ 2.25
SMARCC2-210ENST00000550519 PRKAR2BP31323 418 aa29.11■■■□□ 2.25
SMARCC2-210ENST00000550519 FMNL2Q96PY5 1086 aa29.11■■■□□ 2.25
SMARCC2-210ENST00000550519 APLP1P51693 650 aa29.1■■■□□ 2.25
SMARCC2-210ENST00000550519 BICDL1Q6ZP65 573 aa29.1■■■□□ 2.25
SMARCC2-210ENST00000550519 SIPA1L3O60292 1781 aaPredicted RBP29.09■■■□□ 2.25
SMARCC2-210ENST00000550519 IL6STP40189 918 aaPredicted RBP29.09■■■□□ 2.25
SMARCC2-210ENST00000550519 TTLL6Q8N841 843 aa29.09■■■□□ 2.25
SMARCC2-210ENST00000550519 KDM2BQ8NHM5 1336 aa29.09■■■□□ 2.25
SMARCC2-210ENST00000550519 CARMIL3Q8ND23 1372 aa29.09■■■□□ 2.25
SMARCC2-210ENST00000550519 TBC1D9BQ66K14 1250 aa29.08■■■□□ 2.25
SMARCC2-210ENST00000550519 C2CD5Q86YS7 1000 aa29.08■■■□□ 2.25
SMARCC2-210ENST00000550519 RBM46Q8TBY0 533 aaKnown RBP29.08■■■□□ 2.25
SMARCC2-210ENST00000550519 TBC1D2BQ9UPU7 963 aa29.07■■■□□ 2.24
SMARCC2-210ENST00000550519 NUDCQ9Y266 331 aa29.07■■■□□ 2.24
SMARCC2-210ENST00000550519 BTBD11A6QL63 1104 aa29.06■■■□□ 2.24
SMARCC2-210ENST00000550519 H0YIN7 160 aa29.06■■■□□ 2.24
SMARCC2-210ENST00000550519 KCNQ3O43525 872 aa29.06■■■□□ 2.24
SMARCC2-210ENST00000550519 RASSF7Q02833 373 aa29.06■■■□□ 2.24
SMARCC2-210ENST00000550519 A1BGP04217 495 aa29.05■■■□□ 2.24
SMARCC2-210ENST00000550519 SBF1O95248 1867 aa29.04■■■□□ 2.24
SMARCC2-210ENST00000550519 ZC3H4Q9UPT8 1303 aaKnown RBP29.04■■■□□ 2.24
SMARCC2-210ENST00000550519 PPP2R1AP30153 589 aa29.04■■■□□ 2.24
SMARCC2-210ENST00000550519 C16orf71Q8IYS4 520 aaPredicted RBP29.04■■■□□ 2.24
SMARCC2-210ENST00000550519 ZNF330Q9Y3S2 320 aaPredicted RBP29.04■■■□□ 2.24
SMARCC2-210ENST00000550519 LMNB1P20700 586 aa29.03■■■□□ 2.24
SMARCC2-210ENST00000550519 PRELPP51888 382 aa29.03■■■□□ 2.24
SMARCC2-210ENST00000550519 DLEC1Q9Y238 1755 aa29.03■■■□□ 2.24
SMARCC2-210ENST00000550519 U2AF1L5P0DN76 240 aaPredicted RBP29.02■■■□□ 2.24
SMARCC2-210ENST00000550519 U2AF1Q01081 240 aaKnown RBP eCLIP29.02■■■□□ 2.24
SMARCC2-210ENST00000550519 DNAJC5GQ8N7S2 189 aa29.02■■■□□ 2.24
SMARCC2-210ENST00000550519 BRIP1Q9BX63 1249 aa29.02■■■□□ 2.24
SMARCC2-210ENST00000550519 RRAGCQ9HB90 399 aa29.02■■■□□ 2.24
SMARCC2-210ENST00000550519 CAMTA2O94983 1202 aa29.01■■■□□ 2.23
SMARCC2-210ENST00000550519 IFFO2Q5TF58 517 aa29.01■■■□□ 2.23
SMARCC2-210ENST00000550519 PRR5LQ6MZQ0 368 aa29.01■■■□□ 2.23
SMARCC2-210ENST00000550519 PDZRN3Q9UPQ7 1066 aa29.01■■■□□ 2.23
SMARCC2-210ENST00000550519 SCN7AQ01118 1682 aa29.01■■■□□ 2.23
SMARCC2-210ENST00000550519 FSTL1Q12841 308 aa29■■■□□ 2.23
SMARCC2-210ENST00000550519 USP16Q9Y5T5 823 aa29■■■□□ 2.23
SMARCC2-210ENST00000550519 PDE6BP35913 854 aa28.99■■■□□ 2.23
SMARCC2-210ENST00000550519 NPM2Q86SE8 214 aaKnown RBP28.99■■■□□ 2.23
SMARCC2-210ENST00000550519 NFKBIEO00221 500 aa28.98■■■□□ 2.23
SMARCC2-210ENST00000550519 MCM10Q7L590 875 aa28.98■■■□□ 2.23
SMARCC2-210ENST00000550519 RTF1Q92541 710 aaKnown RBP28.98■■■□□ 2.23
SMARCC2-210ENST00000550519 CCDC24Q8N4L8 307 aa28.97■■■□□ 2.23
SMARCC2-210ENST00000550519 SETDB2Q96T68 719 aa28.97■■■□□ 2.23
SMARCC2-210ENST00000550519 PRAMEF22A3QJZ6 481 aa28.96■■■□□ 2.23
SMARCC2-210ENST00000550519 GLTPD2A6NH11 291 aa28.96■■■□□ 2.23
SMARCC2-210ENST00000550519 DZIP3Q86Y13 1208 aaKnown RBP28.96■■■□□ 2.23
SMARCC2-210ENST00000550519 ZNF622Q969S3 477 aaKnown RBP eCLIP28.96■■■□□ 2.232e-8■■□□□ 12
SMARCC2-210ENST00000550519 HTATSF1O43719 755 aaKnown RBP28.95■■■□□ 2.22
SMARCC2-210ENST00000550519 SNRPA1P09661 255 aaKnown RBP28.95■■■□□ 2.22
SMARCC2-210ENST00000550519 ANKRD31Q8N7Z5 1873 aa28.95■■■□□ 2.22
SMARCC2-210ENST00000550519 TNRC6CQ9HCJ0 1690 aaKnown RBP28.94■■■□□ 2.22
SMARCC2-210ENST00000550519 CNBD1Q8NA66 436 aa28.94■■■□□ 2.22
SMARCC2-210ENST00000550519 PIP4K2AP48426 406 aaPredicted RBP28.93■■■□□ 2.22
SMARCC2-210ENST00000550519 DCTN1Q14203 1278 aa28.93■■■□□ 2.22
SMARCC2-210ENST00000550519 C21orf2O43822 256 aa28.91■■■□□ 2.22
SMARCC2-210ENST00000550519 CLEC4GQ6UXB4 293 aa28.91■■■□□ 2.22
SMARCC2-210ENST00000550519 VEGFAP15692 232 aaPredicted RBP28.9■■■□□ 2.22
SMARCC2-210ENST00000550519 SMC1BQ8NDV3 1235 aa28.9■■■□□ 2.22
SMARCC2-210ENST00000550519 NPHP1O15259 732 aa28.89■■■□□ 2.22
SMARCC2-210ENST00000550519 SRGNP10124 158 aa28.89■■■□□ 2.22
SMARCC2-210ENST00000550519 ST5P78524 1137 aa28.89■■■□□ 2.22
SMARCC2-210ENST00000550519 HTRA3P83110 453 aa28.88■■■□□ 2.21
SMARCC2-210ENST00000550519 TAF7Q15545 349 aaPredicted RBP28.88■■■□□ 2.21
SMARCC2-210ENST00000550519 STYK1Q6J9G0 422 aa28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms