RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 CCNL1Q9UK58 526 aaPredicted RBP12.55□□□□□ -0.4
SMARCD1-206ENST00000549274 TAF1LQ8IZX4 1826 aa12.55□□□□□ -0.4
SMARCD1-206ENST00000549274 COL5A3P25940 1745 aaPredicted RBP12.54□□□□□ -0.4
SMARCD1-206ENST00000549274 FKBP8Q14318 412 aa12.54□□□□□ -0.4
SMARCD1-206ENST00000549274 HDGFL1Q5TGJ6 251 aa12.54□□□□□ -0.4
SMARCD1-206ENST00000549274 SPINK5Q9NQ38 1064 aaPredicted RBP12.54□□□□□ -0.4
SMARCD1-206ENST00000549274 TJP1Q07157 1748 aa12.54□□□□□ -0.4
SMARCD1-206ENST00000549274 RC3H1Q5TC82 1133 aaKnown RBP12.53□□□□□ -0.4
SMARCD1-206ENST00000549274 DBF4Q9UBU7 674 aaPredicted RBP12.53□□□□□ -0.4
SMARCD1-206ENST00000549274 CNTNAP4Q9C0A0 1308 aa12.53□□□□□ -0.4
SMARCD1-206ENST00000549274 KCNQ3O43525 872 aa12.52□□□□□ -0.41
SMARCD1-206ENST00000549274 TXNRD1Q16881 649 aa12.52□□□□□ -0.41
SMARCD1-206ENST00000549274 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.52□□□□□ -0.41
SMARCD1-206ENST00000549274 HYPKQ9NX55 129 aa12.52□□□□□ -0.41
SMARCD1-206ENST00000549274 KIF16BQ96L93 1317 aa12.52□□□□□ -0.41
SMARCD1-206ENST00000549274 RREB1Q92766 1687 aa12.51□□□□□ -0.41
SMARCD1-206ENST00000549274 VAMP4O75379 141 aa12.51□□□□□ -0.41
SMARCD1-206ENST00000549274 C8orf58Q8NAV2 365 aa12.51□□□□□ -0.41
SMARCD1-206ENST00000549274 DDX21Q9NR30 783 aaKnown RBP eCLIP12.51□□□□□ -0.41
SMARCD1-206ENST00000549274 A0A087WZG4 1122 aa12.5□□□□□ -0.41
SMARCD1-206ENST00000549274 CYP19A1P11511 503 aaPredicted RBP12.5□□□□□ -0.41
SMARCD1-206ENST00000549274 BRPF1P55201 1214 aaPredicted RBP12.5□□□□□ -0.41
SMARCD1-206ENST00000549274 FLAD1Q8NFF5 587 aa12.5□□□□□ -0.41
SMARCD1-206ENST00000549274 AK7Q96M32 723 aa12.5□□□□□ -0.41
SMARCD1-206ENST00000549274 CCDC87Q9NVE4 849 aa12.5□□□□□ -0.41
SMARCD1-206ENST00000549274 RNF216Q9NWF9 866 aaPredicted RBP12.5□□□□□ -0.41
SMARCD1-206ENST00000549274 C4BP0C0L5 1744 aa12.5□□□□□ -0.41
SMARCD1-206ENST00000549274 ELL2O00472 640 aaPredicted RBP12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 RGL2O15211 777 aa12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 IPO8O15397 1037 aaKnown RBP12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 DDX58O95786 925 aaKnown RBP12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 MS4A1P11836 297 aa12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 EIF2S2P20042 333 aaKnown RBP12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 IL6STP40189 918 aaPredicted RBP12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 NBPF14Q5TI25 921 aa12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 DNAJC10Q8IXB1 793 aa12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 UPF1Q92900 1129 aaKnown RBP eCLIP12.49□□□□□ -0.411e-7■■■■■ 30.6
SMARCD1-206ENST00000549274 CAMKK2Q96RR4 588 aa12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 RCAN3Q9UKA8 241 aa12.49□□□□□ -0.41
SMARCD1-206ENST00000549274 QSER1Q2KHR3 1735 aa12.48□□□□□ -0.41
SMARCD1-206ENST00000549274 PTPRCP08575 1304 aa12.48□□□□□ -0.41
SMARCD1-206ENST00000549274 CRKLP46109 303 aaKnown RBP12.48□□□□□ -0.41
SMARCD1-206ENST00000549274 PTF1AQ7RTS3 328 aa12.48□□□□□ -0.41
SMARCD1-206ENST00000549274 TSPYL6Q8N831 410 aa12.48□□□□□ -0.41
SMARCD1-206ENST00000549274 SMC4Q9NTJ3 1288 aa12.48□□□□□ -0.41
SMARCD1-206ENST00000549274 USP16Q9Y5T5 823 aa12.48□□□□□ -0.41
SMARCD1-206ENST00000549274 RARSP54136 660 aaKnown RBP12.47□□□□□ -0.41
SMARCD1-206ENST00000549274 EN1Q05925 392 aaPredicted RBP12.47□□□□□ -0.41
SMARCD1-206ENST00000549274 ITPK1Q13572 414 aa12.47□□□□□ -0.41
SMARCD1-206ENST00000549274 KRT24Q2M2I5 525 aa12.47□□□□□ -0.41
SMARCD1-206ENST00000549274 SLC4A9Q96Q91 983 aa12.47□□□□□ -0.41
SMARCD1-206ENST00000549274 RTCBQ9Y3I0 505 aaKnown RBP12.47□□□□□ -0.41
SMARCD1-206ENST00000549274 NUP188Q5SRE5 1749 aa12.47□□□□□ -0.41
SMARCD1-206ENST00000549274 MYH14Q7Z406 1995 aaKnown RBP12.47□□□□□ -0.41
SMARCD1-206ENST00000549274 RPS6KA4O75676 772 aa12.46□□□□□ -0.41
SMARCD1-206ENST00000549274 SSFA2P28290 1259 aa12.46□□□□□ -0.41
SMARCD1-206ENST00000549274 LINC00116Q8NCU8 138 aa12.46□□□□□ -0.41
SMARCD1-206ENST00000549274 STK32BQ9NY57 414 aa12.46□□□□□ -0.41
SMARCD1-206ENST00000549274 UBR3Q6ZT12 1888 aa12.46□□□□□ -0.42
SMARCD1-206ENST00000549274 SLC4A2P04920 1241 aa12.45□□□□□ -0.42
SMARCD1-206ENST00000549274 CANXP27824 592 aaKnown RBP12.45□□□□□ -0.42
SMARCD1-206ENST00000549274 EZH2Q15910 746 aaKnown RBP12.45□□□□□ -0.42
SMARCD1-206ENST00000549274 POTEHQ6S545 545 aa12.45□□□□□ -0.42
SMARCD1-206ENST00000549274 KIF6Q6ZMV9 814 aa12.45□□□□□ -0.42
SMARCD1-206ENST00000549274 ARHGAP45Q92619 1136 aa12.45□□□□□ -0.42
SMARCD1-206ENST00000549274 CHPF2Q9P2E5 772 aa12.45□□□□□ -0.42
SMARCD1-206ENST00000549274 ZNF652Q9Y2D9 606 aa12.45□□□□□ -0.42
SMARCD1-206ENST00000549274 GNPATO15228 680 aa12.44□□□□□ -0.42
SMARCD1-206ENST00000549274 A1BGP04217 495 aa12.44□□□□□ -0.42
SMARCD1-206ENST00000549274 HSP90AB3PQ58FF7 597 aa12.44□□□□□ -0.42
SMARCD1-206ENST00000549274 INTS5Q6P9B9 1019 aaKnown RBP12.44□□□□□ -0.42
SMARCD1-206ENST00000549274 ILDR2Q71H61 639 aa12.44□□□□□ -0.42
SMARCD1-206ENST00000549274 SSH1Q8WYL5 1049 aa12.44□□□□□ -0.42
SMARCD1-206ENST00000549274 API5Q9BZZ5 524 aaKnown RBP12.44□□□□□ -0.42
SMARCD1-206ENST00000549274 LRRC4BQ9NT99 713 aa12.44□□□□□ -0.42
SMARCD1-206ENST00000549274 COL15A1P39059 1388 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 PRAMEF22A3QJZ6 481 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 MYL6BP14649 208 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 EIF5P55010 431 aaKnown RBP12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 FLIIQ13045 1269 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 DEFB132Q7Z7B7 95 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 PROM2Q8N271 834 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 MRPL50Q8N5N7 158 aaKnown RBP12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 NECTIN2Q92692 538 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 TFCP2L1Q9NZI6 479 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 ZBTB1Q9Y2K1 713 aa12.43□□□□□ -0.42
SMARCD1-206ENST00000549274 PXDNLA1KZ92 1463 aa12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 ERVV-1B6SEH8 477 aa12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 ZPR1O75312 459 aa12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 RFC4P35249 363 aa12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 FKBP5Q13451 457 aaPredicted RBP12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 PDIA6Q15084 440 aa12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 TRAPPC3LQ5T215 181 aa12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 ZKSCAN2Q63HK3 967 aa12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 CLEC4GQ6UXB4 293 aa12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 CHMP4BQ9H444 224 aaKnown RBP12.42□□□□□ -0.42
SMARCD1-206ENST00000549274 BCORQ6W2J9 1755 aa12.41□□□□□ -0.42
SMARCD1-206ENST00000549274 NEXNQ0ZGT2 675 aa12.41□□□□□ -0.42
SMARCD1-206ENST00000549274 SLC15A2Q16348 729 aa12.41□□□□□ -0.42
SMARCD1-206ENST00000549274 DZIP3Q86Y13 1208 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms