RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 APLP1P51693 650 aa9.47□□□□□ -0.89
LIMA1-204ENST00000549064 CLUAP1Q96AJ1 413 aa9.47□□□□□ -0.89
LIMA1-204ENST00000549064 CABP1Q9NZU7 370 aa9.47□□□□□ -0.89
LIMA1-204ENST00000549064 LTN1O94822 1766 aa9.46□□□□□ -0.9
LIMA1-204ENST00000549064 MDM2Q00987 491 aaPredicted RBP9.46□□□□□ -0.9
LIMA1-204ENST00000549064 TRIM26Q12899 539 aaPredicted RBP9.46□□□□□ -0.9
LIMA1-204ENST00000549064 COL23A1Q86Y22 540 aaPredicted RBP9.46□□□□□ -0.9
LIMA1-204ENST00000549064 NPDC1Q9NQX5 325 aaPredicted RBP9.46□□□□□ -0.9
LIMA1-204ENST00000549064 COLQQ9Y215 455 aaPredicted RBP9.46□□□□□ -0.9
LIMA1-204ENST00000549064 MAP3K7O43318 606 aa9.45□□□□□ -0.9
LIMA1-204ENST00000549064 CLCN6P51797 869 aa9.45□□□□□ -0.9
LIMA1-204ENST00000549064 SLC27A3Q5K4L6 730 aa9.45□□□□□ -0.9
LIMA1-204ENST00000549064 NLRP2Q9NX02 1062 aa9.45□□□□□ -0.9
LIMA1-204ENST00000549064 SEC24BO95487 1268 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 IL2RBP14784 551 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 HTRA3P83110 453 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 SH3D19Q5HYK7 790 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 KCNH5Q8NCM2 988 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 PHOX2BQ99453 314 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 TMUB1Q9BVT8 246 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 TTC21BQ7Z4L5 1316 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 KIAA1210Q9ULL0 1709 aa9.44□□□□□ -0.9
LIMA1-204ENST00000549064 ERBB3P21860 1342 aa9.43□□□□□ -0.9
LIMA1-204ENST00000549064 CLCN1P35523 988 aa9.43□□□□□ -0.9
LIMA1-204ENST00000549064 NBPF1Q3BBV0 1214 aa9.43□□□□□ -0.9
LIMA1-204ENST00000549064 TNS4Q8IZW8 715 aa9.43□□□□□ -0.9
LIMA1-204ENST00000549064 PTCD2Q8WV60 388 aaKnown RBP9.43□□□□□ -0.9
LIMA1-204ENST00000549064 SYTL4Q96C24 671 aaPredicted RBP9.43□□□□□ -0.9
LIMA1-204ENST00000549064 C5P01031 1676 aa9.42□□□□□ -0.9
LIMA1-204ENST00000549064 NSD2O96028 1365 aa9.42□□□□□ -0.9
LIMA1-204ENST00000549064 CENPJQ9HC77 1338 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-204ENST00000549064 PRELPP51888 382 aa9.42□□□□□ -0.9
LIMA1-204ENST00000549064 DDX54Q8TDD1 881 aaKnown RBP9.42□□□□□ -0.9
LIMA1-204ENST00000549064 GPCPD1Q9NPB8 672 aa9.42□□□□□ -0.9
LIMA1-204ENST00000549064 CD2APQ9Y5K6 639 aa9.42□□□□□ -0.9
LIMA1-204ENST00000549064 IGSF1Q8N6C5 1336 aa9.41□□□□□ -0.9
LIMA1-204ENST00000549064 TAF1LQ8IZX4 1826 aa9.41□□□□□ -0.9
LIMA1-204ENST00000549064 A6NJR5 290 aa9.41□□□□□ -0.9
LIMA1-204ENST00000549064 TRAK2O60296 914 aa9.41□□□□□ -0.9
LIMA1-204ENST00000549064 PHF14O94880 888 aa9.41□□□□□ -0.9
LIMA1-204ENST00000549064 MCM6Q14566 821 aa9.41□□□□□ -0.9
LIMA1-204ENST00000549064 TSR1Q2NL82 804 aaKnown RBP9.41□□□□□ -0.9
LIMA1-204ENST00000549064 CCNL1Q9UK58 526 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-204ENST00000549064 USP54Q70EL1 1684 aa9.41□□□□□ -0.9
LIMA1-204ENST00000549064 TOMM70O94826 608 aa9.4□□□□□ -0.9
LIMA1-204ENST00000549064 SSTR3P32745 418 aaPredicted RBP9.4□□□□□ -0.9
LIMA1-204ENST00000549064 FAM161AQ3B820 660 aa9.4□□□□□ -0.9
LIMA1-204ENST00000549064 NLRP7Q8WX94 980 aa9.4□□□□□ -0.9
LIMA1-204ENST00000549064 KLRG1Q96E93 195 aa9.4□□□□□ -0.9
LIMA1-204ENST00000549064 STAC3Q96MF2 364 aa9.4□□□□□ -0.9
LIMA1-204ENST00000549064 EPAS1Q99814 870 aa9.4□□□□□ -0.9
LIMA1-204ENST00000549064 CICQ96RK0 1608 aaPredicted RBP9.4□□□□□ -0.9
LIMA1-204ENST00000549064 RGPD2P0DJD1 1756 aa9.4□□□□□ -0.91
LIMA1-204ENST00000549064 MON2Q7Z3U7 1717 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 TOGARAM1Q9Y4F4 1720 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 ANKRD36BQ8N2N9 1353 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 CCDC82Q8N4S0 544 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 JMYQ8N9B5 988 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 ANKRD24Q8TF21 1146 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 BEGAINQ9BUH8 593 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 NMRK2Q9NPI5 230 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 PCDHGA10Q9Y5H3 936 aa9.39□□□□□ -0.91
LIMA1-204ENST00000549064 TTC21AQ8NDW8 1320 aa9.38□□□□□ -0.91
LIMA1-204ENST00000549064 N4BP2Q86UW6 1770 aaPredicted RBP9.38□□□□□ -0.91
LIMA1-204ENST00000549064 SKIV2LQ15477 1246 aaKnown RBP9.38□□□□□ -0.91
LIMA1-204ENST00000549064 SMIM5Q71RC9 77 aa9.38□□□□□ -0.91
LIMA1-204ENST00000549064 PROCA1Q8NCQ7 364 aaPredicted RBP9.38□□□□□ -0.91
LIMA1-204ENST00000549064 RAB3GAP2Q9H2M9 1393 aa9.37□□□□□ -0.91
LIMA1-204ENST00000549064 KIAA1551Q9HCM1 1747 aa9.37□□□□□ -0.91
LIMA1-204ENST00000549064 UBR3Q6ZT12 1888 aa9.37□□□□□ -0.91
LIMA1-204ENST00000549064 FAM208AQ9UK61 1670 aaKnown RBP9.37□□□□□ -0.91
LIMA1-204ENST00000549064 C3orf67Q6ZVT6 689 aa9.37□□□□□ -0.91
LIMA1-204ENST00000549064 AMIGO3Q86WK7 504 aa9.37□□□□□ -0.91
LIMA1-204ENST00000549064 POLR3EQ9NVU0 708 aa9.37□□□□□ -0.91
LIMA1-204ENST00000549064 KTN1Q86UP2 1357 aaKnown RBP9.37□□□□□ -0.91
LIMA1-204ENST00000549064 POTEFA5A3E0 1075 aa9.36□□□□□ -0.91
LIMA1-204ENST00000549064 SLC34A2O95436 690 aa9.36□□□□□ -0.91
LIMA1-204ENST00000549064 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.36□□□□□ -0.91
LIMA1-204ENST00000549064 SLAIN1Q8ND83 568 aa9.36□□□□□ -0.91
LIMA1-204ENST00000549064 LTV1Q96GA3 475 aaPredicted RBP9.36□□□□□ -0.91
LIMA1-204ENST00000549064 C4BP0C0L5 1744 aa9.36□□□□□ -0.91
LIMA1-204ENST00000549064 USP47Q96K76 1375 aa9.36□□□□□ -0.91
LIMA1-204ENST00000549064 NME9Q86XW9 330 aa9.35□□□□□ -0.91
LIMA1-204ENST00000549064 FAM217BQ9NTX9 383 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-204ENST00000549064 EVC2Q86UK5 1308 aa9.34□□□□□ -0.91
LIMA1-204ENST00000549064 KIF13BQ9NQT8 1826 aa9.34□□□□□ -0.91
LIMA1-204ENST00000549064 TYW1BQ6NUM6 668 aa9.34□□□□□ -0.91
LIMA1-204ENST00000549064 METTL3Q86U44 580 aaKnown RBP9.34□□□□□ -0.91
LIMA1-204ENST00000549064 RBM46Q8TBY0 533 aaKnown RBP9.34□□□□□ -0.91
LIMA1-204ENST00000549064 POM121Q96HA1 1249 aa9.34□□□□□ -0.91
LIMA1-204ENST00000549064 MEGF6O75095 1541 aa9.34□□□□□ -0.91
LIMA1-204ENST00000549064 USP31Q70CQ4 1352 aa9.34□□□□□ -0.91
LIMA1-204ENST00000549064 PKD1L3Q7Z443 1732 aa9.34□□□□□ -0.92
LIMA1-204ENST00000549064 PADI6Q6TGC4 694 aa9.33□□□□□ -0.92
LIMA1-204ENST00000549064 PXDNLA1KZ92 1463 aa9.33□□□□□ -0.92
LIMA1-204ENST00000549064 BRCA1P38398 1863 aaKnown RBP9.32□□□□□ -0.92
LIMA1-204ENST00000549064 KCPQ6ZWJ8 1503 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 GABBR2O75899 941 aa9.32□□□□□ -0.92
LIMA1-204ENST00000549064 HSPA1AP0DMV8 641 aaKnown RBP9.32□□□□□ -0.92
LIMA1-204ENST00000549064 HSPA1BP0DMV9 641 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms