RNA–Protein interactions for RNA: ENST00000547951.1

USP44-204, Transcript of ubiquitin specific peptidase 44, humanhuman

TSL 3

Gene USP44, Length 685 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-204ENST00000547951 NUDCQ9Y266 331 aa28.69■■■□□ 2.18
USP44-204ENST00000547951 COL15A1P39059 1388 aa28.69■■■□□ 2.18
USP44-204ENST00000547951 TGFB2P61812 414 aa28.68■■■□□ 2.18
USP44-204ENST00000547951 ATP10DQ9P241 1426 aa28.68■■■□□ 2.18
USP44-204ENST00000547951 CANXP27824 592 aaKnown RBP28.67■■■□□ 2.18
USP44-204ENST00000547951 HEG1Q9ULI3 1381 aa28.66■■■□□ 2.18
USP44-204ENST00000547951 ZPR1O75312 459 aa28.66■■■□□ 2.18
USP44-204ENST00000547951 TM4SF1P30408 202 aa28.66■■■□□ 2.18
USP44-204ENST00000547951 BCL2L12Q9HB09 334 aa28.66■■■□□ 2.18
USP44-204ENST00000547951 ADCY9O60503 1353 aa28.65■■■□□ 2.18
USP44-204ENST00000547951 POLRMTO00411 1230 aaKnown RBP28.65■■■□□ 2.18
USP44-204ENST00000547951 KCNA3P22001 575 aa28.65■■■□□ 2.18
USP44-204ENST00000547951 BCS1LQ9Y276 419 aa28.65■■■□□ 2.18
USP44-204ENST00000547951 AFDNP55196 1824 aaKnown RBP28.64■■■□□ 2.18
USP44-204ENST00000547951 MCM10Q7L590 875 aa28.64■■■□□ 2.18
USP44-204ENST00000547951 NARFQ9UHQ1 456 aa28.64■■■□□ 2.18
USP44-204ENST00000547951 FCHSD2O94868 740 aa28.63■■■□□ 2.17
USP44-204ENST00000547951 DCTN1Q14203 1278 aa28.62■■■□□ 2.17
USP44-204ENST00000547951 NFIXQ14938 502 aa28.62■■■□□ 2.17
USP44-204ENST00000547951 STARD3NLO95772 234 aa28.61■■■□□ 2.17
USP44-204ENST00000547951 C1QTNF8P60827 252 aa28.61■■■□□ 2.17
USP44-204ENST00000547951 BTBD11A6QL63 1104 aa28.6■■■□□ 2.17
USP44-204ENST00000547951 GIGYF1O75420 1035 aaPredicted RBP28.6■■■□□ 2.17
USP44-204ENST00000547951 CHRNA5P30532 468 aa28.6■■■□□ 2.17
USP44-204ENST00000547951 EIF5P55010 431 aaKnown RBP28.6■■■□□ 2.17
USP44-204ENST00000547951 ZNF526Q8TF50 670 aaPredicted RBP28.59■■■□□ 2.17
USP44-204ENST00000547951 FMNL2Q96PY5 1086 aa28.59■■■□□ 2.17
USP44-204ENST00000547951 NRXN2Q9P2S2 1712 aa28.59■■■□□ 2.17
USP44-204ENST00000547951 DLG5Q8TDM6 1919 aa28.58■■■□□ 2.17
USP44-204ENST00000547951 PRAMEF22A3QJZ6 481 aa28.57■■■□□ 2.16
USP44-204ENST00000547951 A1BGP04217 495 aa28.57■■■□□ 2.16
USP44-204ENST00000547951 ARFGEF1Q9Y6D6 1849 aa28.57■■■□□ 2.16
USP44-204ENST00000547951 SCN7AQ01118 1682 aa28.56■■■□□ 2.16
USP44-204ENST00000547951 ZNF330Q9Y3S2 320 aaPredicted RBP28.56■■■□□ 2.16
USP44-204ENST00000547951 RTF1Q92541 710 aaKnown RBP28.55■■■□□ 2.16
USP44-204ENST00000547951 PIP4K2AP48426 406 aaPredicted RBP28.54■■■□□ 2.16
USP44-204ENST00000547951 ARHGAP27Q6ZUM4 889 aa28.54■■■□□ 2.16
USP44-204ENST00000547951 TEX13AQ9BXU3 409 aaPredicted RBP28.54■■■□□ 2.16
USP44-204ENST00000547951 TBC1D2BQ9UPU7 963 aa28.54■■■□□ 2.16
USP44-204ENST00000547951 CARMIL3Q8ND23 1372 aa28.53■■■□□ 2.16
USP44-204ENST00000547951 BICDL1Q6ZP65 573 aa28.53■■■□□ 2.16
USP44-204ENST00000547951 PIM2Q9P1W9 311 aa28.53■■■□□ 2.16
USP44-204ENST00000547951 USP16Q9Y5T5 823 aa28.53■■■□□ 2.16
USP44-204ENST00000547951 SERPINB2P05120 415 aa28.52■■■□□ 2.16
USP44-204ENST00000547951 PLEKHF1Q96S99 279 aa28.51■■■□□ 2.15
USP44-204ENST00000547951 GPBP1L1Q9HC44 474 aaPredicted RBP28.51■■■□□ 2.15
USP44-204ENST00000547951 A0A087WZG4 1122 aa28.5■■■□□ 2.15
USP44-204ENST00000547951 IL6STP40189 918 aaPredicted RBP28.5■■■□□ 2.15
USP44-204ENST00000547951 TBC1D9BQ66K14 1250 aa28.5■■■□□ 2.15
USP44-204ENST00000547951 MIS18AQ9NYP9 233 aa28.5■■■□□ 2.15
USP44-204ENST00000547951 DALRD3Q5D0E6 543 aaKnown RBP28.49■■■□□ 2.15
USP44-204ENST00000547951 DLEC1Q9Y238 1755 aa28.48■■■□□ 2.15
USP44-204ENST00000547951 SENP3-EIF4A1A0A087X0R7 540 aa28.48■■■□□ 2.15
USP44-204ENST00000547951 HTATSF1O43719 755 aaKnown RBP28.48■■■□□ 2.15
USP44-204ENST00000547951 ANKRD31Q8N7Z5 1873 aa28.48■■■□□ 2.15
USP44-204ENST00000547951 BCORQ6W2J9 1755 aa28.47■■■□□ 2.15
USP44-204ENST00000547951 DDX10Q13206 875 aaKnown RBP28.47■■■□□ 2.15
USP44-204ENST00000547951 CAMTA2O94983 1202 aa28.46■■■□□ 2.15
USP44-204ENST00000547951 CCDC24Q8N4L8 307 aa28.46■■■□□ 2.15
USP44-204ENST00000547951 THUMPD2Q9BTF0 503 aaKnown RBP28.46■■■□□ 2.15
USP44-204ENST00000547951 KDM3BQ7LBC6 1761 aa28.45■■■□□ 2.14
USP44-204ENST00000547951 SNRPA1P09661 255 aaKnown RBP28.44■■■□□ 2.14
USP44-204ENST00000547951 TAF7Q15545 349 aaPredicted RBP28.44■■■□□ 2.14
USP44-204ENST00000547951 NBPF26B4DH59 902 aa28.43■■■□□ 2.14
USP44-204ENST00000547951 NBPF10Q6P3W6 841 aaKnown RBP28.43■■■□□ 2.14
USP44-204ENST00000547951 NBPF15Q8N660 670 aa28.43■■■□□ 2.14
USP44-204ENST00000547951 NFE2L2Q16236 605 aa28.42■■■□□ 2.14
USP44-204ENST00000547951 DZIP3Q86Y13 1208 aaKnown RBP28.42■■■□□ 2.14
USP44-204ENST00000547951 COL11A2P13942 1736 aaPredicted RBP28.42■■■□□ 2.14
USP44-204ENST00000547951 SBF1O95248 1867 aa28.41■■■□□ 2.14
USP44-204ENST00000547951 C9orf131Q5VYM1 1079 aa28.41■■■□□ 2.14
USP44-204ENST00000547951 C2CD5Q86YS7 1000 aa28.41■■■□□ 2.14
USP44-204ENST00000547951 LAMB4A4D0S4 1761 aa28.4■■■□□ 2.14
USP44-204ENST00000547951 PRR5LQ6MZQ0 368 aa28.4■■■□□ 2.14
USP44-204ENST00000547951 NEFMP07197 916 aa28.39■■■□□ 2.14
USP44-204ENST00000547951 RALBP1Q15311 655 aa28.39■■■□□ 2.14
USP44-204ENST00000547951 CEP350Q5VT06 3117 aa28.39■■■□□ 2.14
USP44-204ENST00000547951 KIF3CO14782 793 aa28.38■■■□□ 2.13
USP44-204ENST00000547951 RASSF7Q02833 373 aa28.36■■■□□ 2.13
USP44-204ENST00000547951 NPM2Q86SE8 214 aaKnown RBP28.36■■■□□ 2.13
USP44-204ENST00000547951 MAPK8IP3Q9UPT6 1336 aa28.36■■■□□ 2.13
USP44-204ENST00000547951 PRELPP51888 382 aa28.35■■■□□ 2.13
USP44-204ENST00000547951 SETDB2Q96T68 719 aa28.35■■■□□ 2.13
USP44-204ENST00000547951 H0YIN7 160 aa28.34■■■□□ 2.13
USP44-204ENST00000547951 TTLL6Q8N841 843 aa28.34■■■□□ 2.13
USP44-204ENST00000547951 RNF181Q9P0P0 153 aa28.34■■■□□ 2.13
USP44-204ENST00000547951 BRIP1Q9BX63 1249 aa28.33■■■□□ 2.13
USP44-204ENST00000547951 NMRK2Q9NPI5 230 aa28.33■■■□□ 2.13
USP44-204ENST00000547951 EIF4A1P60842 406 aaKnown RBP28.32■■■□□ 2.12
USP44-204ENST00000547951 CNBD1Q8NA66 436 aa28.32■■■□□ 2.12
USP44-204ENST00000547951 MYBBP1AQ9BQG0 1328 aaKnown RBP28.31■■■□□ 2.12
USP44-204ENST00000547951 CACNA1SQ13698 1873 aa28.3■■■□□ 2.12
USP44-204ENST00000547951 ZNF622Q969S3 477 aaKnown RBP eCLIP28.3■■■□□ 2.12
USP44-204ENST00000547951 CCDC88AQ3V6T2 1871 aa28.29■■■□□ 2.12
USP44-204ENST00000547951 HLFQ16534 295 aa28.29■■■□□ 2.12
USP44-204ENST00000547951 PNISRQ8TF01 805 aaKnown RBP28.29■■■□□ 2.12
USP44-204ENST00000547951 PNNQ9H307 717 aaKnown RBP28.29■■■□□ 2.12
USP44-204ENST00000547951 ZNF219Q9P2Y4 722 aaPredicted RBP28.29■■■□□ 2.12
USP44-204ENST00000547951 PDE6BP35913 854 aa28.28■■■□□ 2.12
USP44-204ENST00000547951 CCDC146Q8IYE0 955 aa28.28■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms