RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 KCNQ3O43525 872 aa17.88■□□□□ 0.45
CPSF6-204ENST00000547486 BCL2L12Q9HB09 334 aa17.88■□□□□ 0.45
CPSF6-204ENST00000547486 NARFQ9UHQ1 456 aa17.88■□□□□ 0.45
CPSF6-204ENST00000547486 CEMIPQ8WUJ3 1361 aa17.88■□□□□ 0.45
CPSF6-204ENST00000547486 ATP10DQ9P241 1426 aa17.88■□□□□ 0.45
CPSF6-204ENST00000547486 GIGYF1O75420 1035 aaPredicted RBP17.87■□□□□ 0.45
CPSF6-204ENST00000547486 FCHSD2O94868 740 aa17.87■□□□□ 0.45
CPSF6-204ENST00000547486 EIF5P55010 431 aaKnown RBP17.86■□□□□ 0.45
CPSF6-204ENST00000547486 NFIXQ14938 502 aa17.86■□□□□ 0.45
CPSF6-204ENST00000547486 ADCY9O60503 1353 aa17.86■□□□□ 0.45
CPSF6-204ENST00000547486 COL15A1P39059 1388 aa17.86■□□□□ 0.45
CPSF6-204ENST00000547486 KIAA1551Q9HCM1 1747 aa17.86■□□□□ 0.45
CPSF6-204ENST00000547486 KIF13BQ9NQT8 1826 aa17.86■□□□□ 0.45
CPSF6-204ENST00000547486 STARD3NLO95772 234 aa17.85■□□□□ 0.45
CPSF6-204ENST00000547486 HEG1Q9ULI3 1381 aa17.85■□□□□ 0.45
CPSF6-204ENST00000547486 BTBD11A6QL63 1104 aa17.84■□□□□ 0.45
CPSF6-204ENST00000547486 CHRNA5P30532 468 aa17.84■□□□□ 0.45
CPSF6-204ENST00000547486 MCM10Q7L590 875 aa17.84■□□□□ 0.45
CPSF6-204ENST00000547486 ZNF526Q8TF50 670 aaPredicted RBP17.84■□□□□ 0.45
CPSF6-204ENST00000547486 N4BP2Q86UW6 1770 aaPredicted RBP17.84■□□□□ 0.45
CPSF6-204ENST00000547486 A1BGP04217 495 aa17.83■□□□□ 0.44
CPSF6-204ENST00000547486 DCTN1Q14203 1278 aa17.83■□□□□ 0.44
CPSF6-204ENST00000547486 ARHGAP27Q6ZUM4 889 aa17.83■□□□□ 0.44
CPSF6-204ENST00000547486 FMNL2Q96PY5 1086 aa17.83■□□□□ 0.44
CPSF6-204ENST00000547486 PIM2Q9P1W9 311 aa17.83■□□□□ 0.44
CPSF6-204ENST00000547486 VIRMAQ69YN4 1812 aaKnown RBP17.83■□□□□ 0.44
CPSF6-204ENST00000547486 TEX13AQ9BXU3 409 aaPredicted RBP17.82■□□□□ 0.44
CPSF6-204ENST00000547486 GPBP1L1Q9HC44 474 aaPredicted RBP17.82■□□□□ 0.44
CPSF6-204ENST00000547486 UBR2Q8IWV8 1755 aa17.81■□□□□ 0.44
CPSF6-204ENST00000547486 PRAMEF22A3QJZ6 481 aa17.81■□□□□ 0.44
CPSF6-204ENST00000547486 TBC1D2BQ9UPU7 963 aa17.81■□□□□ 0.44
CPSF6-204ENST00000547486 USP16Q9Y5T5 823 aa17.81■□□□□ 0.44
CPSF6-204ENST00000547486 SENP3-EIF4A1A0A087X0R7 540 aa17.8■□□□□ 0.44
CPSF6-204ENST00000547486 SERPINB2P05120 415 aa17.8■□□□□ 0.44
CPSF6-204ENST00000547486 DALRD3Q5D0E6 543 aaKnown RBP17.8■□□□□ 0.44
CPSF6-204ENST00000547486 RTF1Q92541 710 aaKnown RBP17.8■□□□□ 0.44
CPSF6-204ENST00000547486 A0A087WZG4 1122 aa17.79■□□□□ 0.44
CPSF6-204ENST00000547486 TBC1D9BQ66K14 1250 aa17.79■□□□□ 0.44
CPSF6-204ENST00000547486 BICDL1Q6ZP65 573 aa17.79■□□□□ 0.44
CPSF6-204ENST00000547486 ZNF330Q9Y3S2 320 aaPredicted RBP17.79■□□□□ 0.44
CPSF6-204ENST00000547486 HTATSF1O43719 755 aaKnown RBP17.78■□□□□ 0.44
CPSF6-204ENST00000547486 IL6STP40189 918 aaPredicted RBP17.78■□□□□ 0.44
CPSF6-204ENST00000547486 PIP4K2AP48426 406 aaPredicted RBP17.78■□□□□ 0.44
CPSF6-204ENST00000547486 SIPA1L3O60292 1781 aaPredicted RBP17.78■□□□□ 0.44
CPSF6-204ENST00000547486 PLEKHF1Q96S99 279 aa17.77■□□□□ 0.44
CPSF6-204ENST00000547486 MIS18AQ9NYP9 233 aa17.77■□□□□ 0.44
CPSF6-204ENST00000547486 SNRPA1P09661 255 aaKnown RBP17.75■□□□□ 0.43
CPSF6-204ENST00000547486 C9orf131Q5VYM1 1079 aa17.75■□□□□ 0.43
CPSF6-204ENST00000547486 KIF3CO14782 793 aa17.74■□□□□ 0.43
CPSF6-204ENST00000547486 CAMTA2O94983 1202 aa17.74■□□□□ 0.43
CPSF6-204ENST00000547486 TAF7Q15545 349 aaPredicted RBP17.74■□□□□ 0.43
CPSF6-204ENST00000547486 CCDC24Q8N4L8 307 aa17.74■□□□□ 0.43
CPSF6-204ENST00000547486 CARMIL3Q8ND23 1372 aa17.74■□□□□ 0.43
CPSF6-204ENST00000547486 BRCA1P38398 1863 aaKnown RBP17.73■□□□□ 0.43
CPSF6-204ENST00000547486 C2CD5Q86YS7 1000 aa17.73■□□□□ 0.43
CPSF6-204ENST00000547486 NBPF26B4DH59 902 aa17.72■□□□□ 0.43
CPSF6-204ENST00000547486 NBPF10Q6P3W6 841 aaKnown RBP17.72■□□□□ 0.43
CPSF6-204ENST00000547486 DZIP3Q86Y13 1208 aaKnown RBP17.72■□□□□ 0.43
CPSF6-204ENST00000547486 NBPF15Q8N660 670 aa17.72■□□□□ 0.43
CPSF6-204ENST00000547486 THUMPD2Q9BTF0 503 aaKnown RBP17.72■□□□□ 0.43
CPSF6-204ENST00000547486 NRXN2Q9P2S2 1712 aa17.72■□□□□ 0.43
CPSF6-204ENST00000547486 DDX10Q13206 875 aaKnown RBP17.71■□□□□ 0.43
CPSF6-204ENST00000547486 PRR5LQ6MZQ0 368 aa17.71■□□□□ 0.43
CPSF6-204ENST00000547486 AFDNP55196 1824 aaKnown RBP17.7■□□□□ 0.42
CPSF6-204ENST00000547486 H0YIN7 160 aa17.7■□□□□ 0.42
CPSF6-204ENST00000547486 NFE2L2Q16236 605 aa17.7■□□□□ 0.42
CPSF6-204ENST00000547486 NPM2Q86SE8 214 aaKnown RBP17.7■□□□□ 0.42
CPSF6-204ENST00000547486 SETDB2Q96T68 719 aa17.7■□□□□ 0.42
CPSF6-204ENST00000547486 BRIP1Q9BX63 1249 aa17.7■□□□□ 0.42
CPSF6-204ENST00000547486 NEFMP07197 916 aa17.69■□□□□ 0.42
CPSF6-204ENST00000547486 PRELPP51888 382 aa17.69■□□□□ 0.42
CPSF6-204ENST00000547486 TTLL6Q8N841 843 aa17.69■□□□□ 0.42
CPSF6-204ENST00000547486 NMRK2Q9NPI5 230 aa17.69■□□□□ 0.42
CPSF6-204ENST00000547486 RNF181Q9P0P0 153 aa17.69■□□□□ 0.42
CPSF6-204ENST00000547486 RASSF7Q02833 373 aa17.68■□□□□ 0.42
CPSF6-204ENST00000547486 RALBP1Q15311 655 aa17.68■□□□□ 0.42
CPSF6-204ENST00000547486 CEP350Q5VT06 3117 aa17.67■□□□□ 0.42
CPSF6-204ENST00000547486 ARFGEF1Q9Y6D6 1849 aa17.67■□□□□ 0.42
CPSF6-204ENST00000547486 PDE6BP35913 854 aa17.66■□□□□ 0.42
CPSF6-204ENST00000547486 EIF4A1P60842 406 aaKnown RBP17.66■□□□□ 0.42
CPSF6-204ENST00000547486 CLEC4GQ6UXB4 293 aa17.66■□□□□ 0.42
CPSF6-204ENST00000547486 CNBD1Q8NA66 436 aa17.66■□□□□ 0.42
CPSF6-204ENST00000547486 PNISRQ8TF01 805 aaKnown RBP17.66■□□□□ 0.42
CPSF6-204ENST00000547486 ZNF622Q969S3 477 aaKnown RBP eCLIP17.66■□□□□ 0.422e-13■□□□□ 9.3
CPSF6-204ENST00000547486 PNNQ9H307 717 aaKnown RBP17.66■□□□□ 0.42
CPSF6-204ENST00000547486 HSPA6P17066 643 aa17.65■□□□□ 0.42
CPSF6-204ENST00000547486 MAPK8IP3Q9UPT6 1336 aa17.65■□□□□ 0.42
CPSF6-204ENST00000547486 SCN7AQ01118 1682 aa17.64■□□□□ 0.42
CPSF6-204ENST00000547486 NFKBIEO00221 500 aa17.64■□□□□ 0.41
CPSF6-204ENST00000547486 HLFQ16534 295 aa17.64■□□□□ 0.41
CPSF6-204ENST00000547486 ZNF219Q9P2Y4 722 aaPredicted RBP17.64■□□□□ 0.41
CPSF6-204ENST00000547486 PDZRN3Q9UPQ7 1066 aa17.64■□□□□ 0.41
CPSF6-204ENST00000547486 C21orf2O43822 256 aa17.63■□□□□ 0.41
CPSF6-204ENST00000547486 TOMM70O94826 608 aa17.63■□□□□ 0.41
CPSF6-204ENST00000547486 RIPK4P57078 832 aa17.63■□□□□ 0.41
CPSF6-204ENST00000547486 NBPF5PQ86XG9 351 aaPredicted RBP17.63■□□□□ 0.41
CPSF6-204ENST00000547486 NGEFQ8N5V2 710 aa17.63■□□□□ 0.41
CPSF6-204ENST00000547486 NPHP1O15259 732 aa17.62■□□□□ 0.41
CPSF6-204ENST00000547486 SRGNP10124 158 aa17.62■□□□□ 0.41
CPSF6-204ENST00000547486 LMNB1P20700 586 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 106.3 ms