RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 AATKQ6ZMQ8 1374 aa11.38□□□□□ -0.59
VPS29-203ENST00000546588 USP31Q70CQ4 1352 aa11.38□□□□□ -0.59
VPS29-203ENST00000546588 LTN1O94822 1766 aa11.37□□□□□ -0.59
VPS29-203ENST00000546588 CLCN1P35523 988 aa11.37□□□□□ -0.59
VPS29-203ENST00000546588 SWT1Q5T5J6 900 aaKnown RBP11.37□□□□□ -0.59
VPS29-203ENST00000546588 HDGFL2Q7Z4V5 671 aaPredicted RBP11.37□□□□□ -0.59
VPS29-203ENST00000546588 NKX2-3Q8TAU0 364 aa11.37□□□□□ -0.59
VPS29-203ENST00000546588 EYA1Q99502 592 aa11.37□□□□□ -0.59
VPS29-203ENST00000546588 CABP1Q9NZU7 370 aa11.37□□□□□ -0.59
VPS29-203ENST00000546588 C1orf167Q5SNV9 1468 aa11.37□□□□□ -0.59
VPS29-203ENST00000546588 MED1Q15648 1581 aaPredicted RBP11.37□□□□□ -0.59
VPS29-203ENST00000546588 APBB1O00213 710 aa11.36□□□□□ -0.59
VPS29-203ENST00000546588 HSPA2P54652 639 aa11.36□□□□□ -0.59
VPS29-203ENST00000546588 NECTIN2Q92692 538 aa11.36□□□□□ -0.59
VPS29-203ENST00000546588 PODXL2Q9NZ53 605 aa11.36□□□□□ -0.59
VPS29-203ENST00000546588 PNPLA6Q8IY17 1366 aa11.36□□□□□ -0.59
VPS29-203ENST00000546588 CDK12Q9NYV4 1490 aaPredicted RBP11.36□□□□□ -0.59
VPS29-203ENST00000546588 TTC21AQ8NDW8 1320 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 SLIT3O75094 1523 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 PEAK1Q9H792 1746 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 PPP2R1AP30153 589 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 CCDC184Q52MB2 194 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 SLF2Q8IX21 1173 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 TMC1Q8TDI8 760 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 PNISRQ8TF01 805 aaKnown RBP11.35□□□□□ -0.59
VPS29-203ENST00000546588 C1orf115Q9H7X2 142 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 GPCPD1Q9NPB8 672 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 TMEM94Q12767 1356 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 ABCA3Q99758 1704 aa11.35□□□□□ -0.59
VPS29-203ENST00000546588 FYB1O15117 783 aa11.34□□□□□ -0.59
VPS29-203ENST00000546588 RNF40O75150 1001 aa11.34□□□□□ -0.59
VPS29-203ENST00000546588 C19orf44Q9H6X5 657 aa11.34□□□□□ -0.59
VPS29-203ENST00000546588 ABCC6O95255 1503 aa11.34□□□□□ -0.59
VPS29-203ENST00000546588 MRS2Q9HD23 443 aa11.33□□□□□ -0.6
VPS29-203ENST00000546588 NFAT5O94916 1531 aa11.33□□□□□ -0.6
VPS29-203ENST00000546588 CAMTA1Q9Y6Y1 1673 aa11.33□□□□□ -0.6
VPS29-203ENST00000546588 ACEP12821 1306 aa11.33□□□□□ -0.6
VPS29-203ENST00000546588 SSTR3P32745 418 aaPredicted RBP11.32□□□□□ -0.6
VPS29-203ENST00000546588 FAM161AQ3B820 660 aa11.32□□□□□ -0.6
VPS29-203ENST00000546588 CC2D1BQ5T0F9 858 aaKnown RBP11.32□□□□□ -0.6
VPS29-203ENST00000546588 IQSEC2Q5JU85 1478 aa11.32□□□□□ -0.6
VPS29-203ENST00000546588 KIF24Q5T7B8 1368 aa11.31□□□□□ -0.6
VPS29-203ENST00000546588 SH3D19Q5HYK7 790 aa11.31□□□□□ -0.6
VPS29-203ENST00000546588 CLUAP1Q96AJ1 413 aa11.31□□□□□ -0.6
VPS29-203ENST00000546588 PHOX2BQ99453 314 aa11.31□□□□□ -0.6
VPS29-203ENST00000546588 TMUB1Q9BVT8 246 aa11.31□□□□□ -0.6
VPS29-203ENST00000546588 TTC21BQ7Z4L5 1316 aa11.31□□□□□ -0.6
VPS29-203ENST00000546588 PXDNQ92626 1479 aa11.31□□□□□ -0.6
VPS29-203ENST00000546588 MSH6P52701 1360 aa11.3□□□□□ -0.6
VPS29-203ENST00000546588 ZPR1O75312 459 aa11.3□□□□□ -0.6
VPS29-203ENST00000546588 NLRP7Q8WX94 980 aa11.3□□□□□ -0.6
VPS29-203ENST00000546588 FAM208AQ9UK61 1670 aaKnown RBP11.3□□□□□ -0.6
VPS29-203ENST00000546588 AHDC1Q5TGY3 1603 aaPredicted RBP11.29□□□□□ -0.6
VPS29-203ENST00000546588 COL22A1Q8NFW1 1626 aaPredicted RBP11.29□□□□□ -0.6
VPS29-203ENST00000546588 COPS2P61201 443 aa11.29□□□□□ -0.6
VPS29-203ENST00000546588 BEGAINQ9BUH8 593 aa11.29□□□□□ -0.6
VPS29-203ENST00000546588 PROSER2Q86WR7 435 aaPredicted RBP11.28□□□□□ -0.6
VPS29-203ENST00000546588 COL18A1P39060 1754 aa11.28□□□□□ -0.6
VPS29-203ENST00000546588 LMO7Q8WWI1 1683 aa11.27□□□□□ -0.6
VPS29-203ENST00000546588 MORC1Q86VD1 984 aa11.27□□□□□ -0.61
VPS29-203ENST00000546588 POLR3EQ9NVU0 708 aa11.27□□□□□ -0.61
VPS29-203ENST00000546588 ZBED9Q6R2W3 1325 aa11.27□□□□□ -0.61
VPS29-203ENST00000546588 ZNF335Q9H4Z2 1342 aaPredicted RBP11.27□□□□□ -0.61
VPS29-203ENST00000546588 SBNO1A3KN83 1393 aa11.27□□□□□ -0.61
VPS29-203ENST00000546588 DLG5Q8TDM6 1919 aa11.27□□□□□ -0.61
VPS29-203ENST00000546588 GGCXP38435 758 aa11.26□□□□□ -0.61
VPS29-203ENST00000546588 ROBO1Q9Y6N7 1651 aa11.26□□□□□ -0.61
VPS29-203ENST00000546588 RTL1A6NKG5 1358 aa11.26□□□□□ -0.61
VPS29-203ENST00000546588 SKIV2LQ15477 1246 aaKnown RBP11.25□□□□□ -0.61
VPS29-203ENST00000546588 EMID1Q96A84 441 aaPredicted RBP11.25□□□□□ -0.61
VPS29-203ENST00000546588 PRR14Q9BWN1 585 aa11.25□□□□□ -0.61
VPS29-203ENST00000546588 GGNBP2Q9H3C7 697 aa11.25□□□□□ -0.61
VPS29-203ENST00000546588 PDZRN3Q9UPQ7 1066 aa11.25□□□□□ -0.61
VPS29-203ENST00000546588 USP19O94966 1318 aa11.25□□□□□ -0.61
VPS29-203ENST00000546588 OATP04181 439 aa11.24□□□□□ -0.61
VPS29-203ENST00000546588 MCM6Q14566 821 aa11.24□□□□□ -0.61
VPS29-203ENST00000546588 METTL3Q86U44 580 aaKnown RBP11.24□□□□□ -0.61
VPS29-203ENST00000546588 NME9Q86XW9 330 aa11.24□□□□□ -0.61
VPS29-203ENST00000546588 PROCA1Q8NCQ7 364 aaPredicted RBP11.24□□□□□ -0.61
VPS29-203ENST00000546588 RGPD5Q99666 1765 aa11.23□□□□□ -0.61
VPS29-203ENST00000546588 CENPBP07199 599 aaPredicted RBP11.23□□□□□ -0.61
VPS29-203ENST00000546588 TRIM67Q6ZTA4 783 aa11.23□□□□□ -0.61
VPS29-203ENST00000546588 FAM217BQ9NTX9 383 aaPredicted RBP11.23□□□□□ -0.61
VPS29-203ENST00000546588 NCAPD2Q15021 1401 aa11.23□□□□□ -0.61
VPS29-203ENST00000546588 TNS3Q68CZ2 1445 aa11.23□□□□□ -0.61
VPS29-203ENST00000546588 A6NJR5 290 aa11.22□□□□□ -0.61
VPS29-203ENST00000546588 TRAK2O60296 914 aa11.22□□□□□ -0.61
VPS29-203ENST00000546588 MTHFSP49914 203 aa11.22□□□□□ -0.61
VPS29-203ENST00000546588 VIRMAQ69YN4 1812 aaKnown RBP11.22□□□□□ -0.61
VPS29-203ENST00000546588 NGEFQ8N5V2 710 aa11.22□□□□□ -0.61
VPS29-203ENST00000546588 COG3Q96JB2 828 aa11.22□□□□□ -0.61
VPS29-203ENST00000546588 POLKQ9UBT6 870 aa11.22□□□□□ -0.61
VPS29-203ENST00000546588 PCDHB3Q9Y5E6 796 aa11.22□□□□□ -0.61
VPS29-203ENST00000546588 RNF223E7ERA6 249 aa11.21□□□□□ -0.61
VPS29-203ENST00000546588 ATF3P18847 181 aa11.21□□□□□ -0.61
VPS29-203ENST00000546588 DNAJB2P25686 324 aa11.21□□□□□ -0.61
VPS29-203ENST00000546588 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
VPS29-203ENST00000546588 BLOC1S3Q6QNY0 202 aa11.21□□□□□ -0.61
VPS29-203ENST00000546588 NGDNQ8NEJ9 315 aaKnown RBP11.21□□□□□ -0.61
VPS29-203ENST00000546588 PMFBP1Q8TBY8 1022 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms