RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 C8orf58Q8NAV2 365 aa10.33□□□□□ -0.76
CLIP1-218ENST00000545889 ANO2Q9NQ90 1003 aa10.33□□□□□ -0.76
CLIP1-218ENST00000545889 FOXD4L1Q9NU39 408 aa10.33□□□□□ -0.76
CLIP1-218ENST00000545889 F6X3S4 739 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 SURF6O75683 361 aaKnown RBP10.32□□□□□ -0.76
CLIP1-218ENST00000545889 ARHGEF25Q86VW2 580 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 ARHGEF10O15013 1369 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 FOXD4L5Q5VV16 416 aaPredicted RBP10.32□□□□□ -0.76
CLIP1-218ENST00000545889 FOXD4L4Q8WXT5 416 aaPredicted RBP10.32□□□□□ -0.76
CLIP1-218ENST00000545889 REC8O95072 547 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 AK7Q96M32 723 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 LGR6Q9HBX8 967 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 TRIM35Q9UPQ4 493 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 LAMC1P11047 1609 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 C3P01024 1663 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 IL2RBP14784 551 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 GRM1Q13255 1194 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 CCDC158Q5M9N0 1113 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 NFATC2IPQ8NCF5 419 aa10.32□□□□□ -0.76
CLIP1-218ENST00000545889 PIP4K2AP48426 406 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-218ENST00000545889 WDR78Q5VTH9 848 aa10.31□□□□□ -0.76
CLIP1-218ENST00000545889 MAP7D2Q96T17 732 aa10.31□□□□□ -0.76
CLIP1-218ENST00000545889 PANK2Q9BZ23 570 aa10.31□□□□□ -0.76
CLIP1-218ENST00000545889 NKTRP30414 1462 aaKnown RBP10.31□□□□□ -0.76
CLIP1-218ENST00000545889 TMEM57Q8N5G2 664 aa10.31□□□□□ -0.76
CLIP1-218ENST00000545889 PTCH1Q13635 1447 aa10.31□□□□□ -0.76
CLIP1-218ENST00000545889 IGHMBP2P38935 993 aaKnown RBP10.3□□□□□ -0.76
CLIP1-218ENST00000545889 RRP12Q5JTH9 1297 aaKnown RBP10.3□□□□□ -0.76
CLIP1-218ENST00000545889 LARP1Q6PKG0 1096 aaKnown RBP10.3□□□□□ -0.76
CLIP1-218ENST00000545889 TNNQ9UQP3 1299 aa10.3□□□□□ -0.76
CLIP1-218ENST00000545889 ATP6V1DQ9Y5K8 247 aa10.3□□□□□ -0.76
CLIP1-218ENST00000545889 XBP1P17861 261 aa10.3□□□□□ -0.76
CLIP1-218ENST00000545889 MYCNP04198 464 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-218ENST00000545889 C16orf71Q8IYS4 520 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-218ENST00000545889 DNAJC2Q99543 621 aaKnown RBP10.3□□□□□ -0.76
CLIP1-218ENST00000545889 FSD1Q9BTV5 496 aa10.3□□□□□ -0.76
CLIP1-218ENST00000545889 ANKARQ7Z5J8 1434 aa10.3□□□□□ -0.76
CLIP1-218ENST00000545889 PDE3AQ14432 1141 aa10.3□□□□□ -0.76
CLIP1-218ENST00000545889 AKAP4Q5JQC9 854 aa10.3□□□□□ -0.76
CLIP1-218ENST00000545889 BRMS1Q9HCU9 246 aa10.3□□□□□ -0.76
CLIP1-218ENST00000545889 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-218ENST00000545889 PCMTD1Q96MG8 357 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-218ENST00000545889 AXIN2Q9Y2T1 843 aa10.29□□□□□ -0.76
CLIP1-218ENST00000545889 CT47B1P0C2W7 299 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-218ENST00000545889 DDB1Q16531 1140 aa10.29□□□□□ -0.76
CLIP1-218ENST00000545889 ZNF771Q7L3S4 317 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-218ENST00000545889 IQGAP1P46940 1657 aa10.29□□□□□ -0.76
CLIP1-218ENST00000545889 CENPQQ7L2Z9 268 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-218ENST00000545889 LNPKQ9C0E8 428 aa10.29□□□□□ -0.76
CLIP1-218ENST00000545889 CEP126Q9P2H0 1117 aa10.29□□□□□ -0.76
CLIP1-218ENST00000545889 SPATA31A3Q5VYP0 1347 aa10.29□□□□□ -0.76
CLIP1-218ENST00000545889 C1orf167Q5SNV9 1468 aa10.29□□□□□ -0.76
CLIP1-218ENST00000545889 MPHOSPH10O00566 681 aaKnown RBP10.29□□□□□ -0.76
CLIP1-218ENST00000545889 IBSPP21815 317 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-218ENST00000545889 POLD1P28340 1107 aa10.29□□□□□ -0.76
CLIP1-218ENST00000545889 CCDC85AQ96PX6 553 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-218ENST00000545889 FOXD4L6Q3SYB3 417 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-218ENST00000545889 TTC39AQ5SRH9 613 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 FOXD4L3Q6VB84 417 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-218ENST00000545889 DLC1Q96QB1 1528 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 TPM1P09493 284 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 TRIM27P14373 513 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 PTMSP20962 102 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 TNNT3P45378 269 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-218ENST00000545889 CLEC11AQ9Y240 323 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 INSRP06213 1382 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 AATKQ6ZMQ8 1374 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 ARHGAP23Q9P227 1491 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 ANKRD20A12PQ8NF67 263 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 RPGRQ92834 1020 aaKnown RBP10.28□□□□□ -0.76
CLIP1-218ENST00000545889 NACAP1Q9BZK3 213 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 TECPR2O15040 1411 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 KIAA1210Q9ULL0 1709 aa10.28□□□□□ -0.76
CLIP1-218ENST00000545889 MVPQ14764 893 aaKnown RBP10.27□□□□□ -0.76
CLIP1-218ENST00000545889 FAM98CQ17RN3 349 aaKnown RBP10.27□□□□□ -0.76
CLIP1-218ENST00000545889 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-218ENST00000545889 ZNF622Q969S3 477 aaKnown RBP eCLIP10.27□□□□□ -0.771e-6■■■□□ 15.5
CLIP1-218ENST00000545889 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.27□□□□□ -0.774e-6■■□□□ 12.7
CLIP1-218ENST00000545889 MAP3K5Q99683 1374 aa10.27□□□□□ -0.77
CLIP1-218ENST00000545889 CPSF1Q10570 1443 aaKnown RBP10.27□□□□□ -0.77
CLIP1-218ENST00000545889 BECN2A8MW95 431 aa10.27□□□□□ -0.77
CLIP1-218ENST00000545889 MRE11P49959 708 aa10.27□□□□□ -0.77
CLIP1-218ENST00000545889 SLIT1O75093 1534 aa10.27□□□□□ -0.77
CLIP1-218ENST00000545889 C6orf229H3BNL8 230 aa10.27□□□□□ -0.77
CLIP1-218ENST00000545889 ANKIB1Q9P2G1 1089 aa10.27□□□□□ -0.77
CLIP1-218ENST00000545889 IL16Q14005 1332 aa10.27□□□□□ -0.77
CLIP1-218ENST00000545889 RNMTO43148 476 aaKnown RBP10.26□□□□□ -0.77
CLIP1-218ENST00000545889 IPO7O95373 1038 aaKnown RBP10.26□□□□□ -0.77
CLIP1-218ENST00000545889 XRCC6P12956 609 aaKnown RBP eCLIP10.26□□□□□ -0.77
CLIP1-218ENST00000545889 CPS1P31327 1500 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 FMNL2Q96PY5 1086 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 PLEKHF1Q96S99 279 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 SRCIN1Q9C0H9 1055 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 RAI14Q9P0K7 980 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 FAM161AQ3B820 660 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 CT47A1Q5JQC4 288 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-218ENST00000545889 ABCF2Q9UG63 623 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 ATP2B1P20020 1258 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 RFC4P35249 363 aa10.26□□□□□ -0.77
CLIP1-218ENST00000545889 CHMP4BP1P59074 171 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms