RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 POLA2Q14181 598 aa17.6■□□□□ 0.41
LDB3-207ENST00000542786 NFATC2IPQ8NCF5 419 aa17.6■□□□□ 0.41
LDB3-207ENST00000542786 OSBPL3Q9H4L5 887 aa17.6■□□□□ 0.41
LDB3-207ENST00000542786 CDC45O75419 566 aa17.59■□□□□ 0.41
LDB3-207ENST00000542786 DDX21Q9NR30 783 aaKnown RBP eCLIP17.59■□□□□ 0.41
LDB3-207ENST00000542786 TBC1D2Q9BYX2 928 aa17.58■□□□□ 0.41
LDB3-207ENST00000542786 HYPKQ9NX55 129 aa17.58■□□□□ 0.41
LDB3-207ENST00000542786 EXOC6BQ9Y2D4 811 aa17.58■□□□□ 0.41
LDB3-207ENST00000542786 KSR2Q6VAB6 950 aa17.58■□□□□ 0.4
LDB3-207ENST00000542786 LRP10Q7Z4F1 713 aa17.58■□□□□ 0.4
LDB3-207ENST00000542786 ZNF496Q96IT1 587 aaPredicted RBP17.58■□□□□ 0.4
LDB3-207ENST00000542786 ALDH1L1O75891 902 aa17.57■□□□□ 0.4
LDB3-207ENST00000542786 HSP90AB1P08238 724 aaKnown RBP17.57■□□□□ 0.4
LDB3-207ENST00000542786 NBPF7P0C2Y1 421 aaPredicted RBP17.57■□□□□ 0.4
LDB3-207ENST00000542786 BECN1Q14457 450 aa17.57■□□□□ 0.4
LDB3-207ENST00000542786 NBR1Q14596 966 aa17.57■□□□□ 0.4
LDB3-207ENST00000542786 DAXXQ9UER7 740 aaPredicted RBP17.57■□□□□ 0.4
LDB3-207ENST00000542786 APBB1O00213 710 aa17.56■□□□□ 0.4
LDB3-207ENST00000542786 CARD10Q9BWT7 1032 aa17.56■□□□□ 0.4
LDB3-207ENST00000542786 MAP3K2Q9Y2U5 619 aa17.56■□□□□ 0.4
LDB3-207ENST00000542786 PAPPAQ13219 1627 aa17.56■□□□□ 0.4
LDB3-207ENST00000542786 PDE1AP54750 535 aa17.56■□□□□ 0.4
LDB3-207ENST00000542786 KIF2CQ99661 725 aa17.56■□□□□ 0.4
LDB3-207ENST00000542786 LAMB4A4D0S4 1761 aa17.55■□□□□ 0.4
LDB3-207ENST00000542786 SDSP20132 328 aa17.55■□□□□ 0.4
LDB3-207ENST00000542786 UBR2Q8IWV8 1755 aa17.55■□□□□ 0.4
LDB3-207ENST00000542786 MTX1Q13505 466 aa17.54■□□□□ 0.4
LDB3-207ENST00000542786 NKX1-1Q15270 411 aaPredicted RBP17.54■□□□□ 0.4
LDB3-207ENST00000542786 PPP1R42Q7Z4L9 355 aa17.54■□□□□ 0.4
LDB3-207ENST00000542786 LRRCC1Q9C099 1032 aa17.54■□□□□ 0.4
LDB3-207ENST00000542786 UTYO14607 1347 aa17.54■□□□□ 0.4
LDB3-207ENST00000542786 ZCRB1Q8TBF4 217 aaKnown RBP17.54■□□□□ 0.4
LDB3-207ENST00000542786 ANTXR1Q9H6X2 564 aa17.54■□□□□ 0.4
LDB3-207ENST00000542786 STAP2Q9UGK3 403 aa17.54■□□□□ 0.4
LDB3-207ENST00000542786 PCDH11XQ9BZA7 1347 aa17.54■□□□□ 0.4
LDB3-207ENST00000542786 PCDH11YQ9BZA8 1340 aa17.54■□□□□ 0.4
LDB3-207ENST00000542786 TOM1L2Q6ZVM7 507 aa17.53■□□□□ 0.4
LDB3-207ENST00000542786 AHDC1Q5TGY3 1603 aaPredicted RBP17.53■□□□□ 0.4
LDB3-207ENST00000542786 KCPQ6ZWJ8 1503 aa17.52■□□□□ 0.4
LDB3-207ENST00000542786 SNRPA1P09661 255 aaKnown RBP17.52■□□□□ 0.39
LDB3-207ENST00000542786 LARP1Q6PKG0 1096 aaKnown RBP17.52■□□□□ 0.39
LDB3-207ENST00000542786 LINS1Q8NG48 757 aa17.52■□□□□ 0.39
LDB3-207ENST00000542786 TOGARAM1Q9Y4F4 1720 aa17.51■□□□□ 0.39
LDB3-207ENST00000542786 COL22A1Q8NFW1 1626 aaPredicted RBP17.51■□□□□ 0.39
LDB3-207ENST00000542786 TNS2Q63HR2 1409 aa17.51■□□□□ 0.39
LDB3-207ENST00000542786 CABP4P57796 275 aa17.51■□□□□ 0.39
LDB3-207ENST00000542786 RAB11FIP3O75154 756 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 IL2RBP14784 551 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 SNX21Q969T3 373 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 FMNL2Q96PY5 1086 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 USP35Q9P2H5 1018 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 USP16Q9Y5T5 823 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 AOX1Q06278 1338 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 ERVV-2B6SEH9 535 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 IGKV5-2P06315 115 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 CWF19L2Q2TBE0 894 aaKnown RBP17.5■□□□□ 0.39
LDB3-207ENST00000542786 KAZALD1Q96I82 304 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 ROBO1Q9Y6N7 1651 aa17.5■□□□□ 0.39
LDB3-207ENST00000542786 LTBP4Q8N2S1 1624 aa17.49■□□□□ 0.39
LDB3-207ENST00000542786 SRGAP3O43295 1099 aa17.49■□□□□ 0.39
LDB3-207ENST00000542786 DDX58O95786 925 aaKnown RBP17.49■□□□□ 0.39
LDB3-207ENST00000542786 MX1P20591 662 aa17.49■□□□□ 0.39
LDB3-207ENST00000542786 XAGE3Q8WTP9 111 aa17.49■□□□□ 0.39
LDB3-207ENST00000542786 COL16A1Q07092 1604 aaPredicted RBP17.49■□□□□ 0.39
LDB3-207ENST00000542786 TTC5Q8N0Z6 440 aa17.48■□□□□ 0.39
LDB3-207ENST00000542786 DISP2A7MBM2 1401 aa17.48■□□□□ 0.39
LDB3-207ENST00000542786 COL14A1Q05707 1796 aaKnown RBP17.48■□□□□ 0.39
LDB3-207ENST00000542786 NFKBIBQ15653 356 aa17.48■□□□□ 0.39
LDB3-207ENST00000542786 GRM8O00222 908 aa17.47■□□□□ 0.39
LDB3-207ENST00000542786 EIF5BO60841 1220 aaKnown RBP17.47■□□□□ 0.39
LDB3-207ENST00000542786 TSHZ3Q63HK5 1081 aa17.47■□□□□ 0.39
LDB3-207ENST00000542786 RHPN1Q8TCX5 695 aa17.47■□□□□ 0.39
LDB3-207ENST00000542786 USP26Q9BXU7 913 aa17.47■□□□□ 0.39
LDB3-207ENST00000542786 BCL11AQ9H165 835 aa17.47■□□□□ 0.39
LDB3-207ENST00000542786 SURF6O75683 361 aaKnown RBP17.46■□□□□ 0.39
LDB3-207ENST00000542786 AIMP1Q12904 312 aaKnown RBP17.46■□□□□ 0.39
LDB3-207ENST00000542786 COPS6Q7L5N1 327 aa17.46■□□□□ 0.39
LDB3-207ENST00000542786 METTL22Q9BUU2 404 aaPredicted RBP17.46■□□□□ 0.39
LDB3-207ENST00000542786 ARFGEF2Q9Y6D5 1785 aa17.46■□□□□ 0.39
LDB3-207ENST00000542786 NEURL1BA8MQ27 555 aa17.46■□□□□ 0.38
LDB3-207ENST00000542786 SUCLG2Q96I99 432 aa17.46■□□□□ 0.38
LDB3-207ENST00000542786 STRN4Q9NRL3 753 aa17.46■□□□□ 0.38
LDB3-207ENST00000542786 C9orf78Q9NZ63 289 aaPredicted RBP17.46■□□□□ 0.38
LDB3-207ENST00000542786 ERBB4Q15303 1308 aa17.45■□□□□ 0.38
LDB3-207ENST00000542786 USP42Q9H9J4 1324 aaKnown RBP17.45■□□□□ 0.38
LDB3-207ENST00000542786 MYL6BP14649 208 aa17.45■□□□□ 0.38
LDB3-207ENST00000542786 PLCH1Q4KWH8 1693 aa17.45■□□□□ 0.38
LDB3-207ENST00000542786 NBPF26B4DH59 902 aa17.44■□□□□ 0.38
LDB3-207ENST00000542786 NBPF14Q5TI25 921 aa17.44■□□□□ 0.38
LDB3-207ENST00000542786 NBPF10Q6P3W6 841 aaKnown RBP17.44■□□□□ 0.38
LDB3-207ENST00000542786 NBPF15Q8N660 670 aa17.44■□□□□ 0.38
LDB3-207ENST00000542786 KIF1BPQ96EK5 621 aa17.44■□□□□ 0.38
LDB3-207ENST00000542786 IL1RAPL2Q9NP60 686 aa17.44■□□□□ 0.38
LDB3-207ENST00000542786 PI4K2BQ8TCG2 481 aa17.44■□□□□ 0.38
LDB3-207ENST00000542786 HDAC5Q9UQL6 1122 aa17.44■□□□□ 0.38
LDB3-207ENST00000542786 COL15A1P39059 1388 aa17.43■□□□□ 0.38
LDB3-207ENST00000542786 NUP188Q5SRE5 1749 aa17.43■□□□□ 0.38
LDB3-207ENST00000542786 DDIT3P35638 169 aa17.43■□□□□ 0.38
LDB3-207ENST00000542786 PIP4K2AP48426 406 aaPredicted RBP17.43■□□□□ 0.38
LDB3-207ENST00000542786 GCKRQ14397 625 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms