RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 EAPPQ56P03 285 aaPredicted RBP13.36□□□□□ -0.27
YBX3-211ENST00000541351 SOGA3Q5TF21 947 aa13.36□□□□□ -0.27
YBX3-211ENST00000541351 L3MBTL3Q96JM7 780 aaPredicted RBP13.36□□□□□ -0.27
YBX3-211ENST00000541351 TAF1DQ9H5J8 278 aaPredicted RBP13.36□□□□□ -0.27
YBX3-211ENST00000541351 ZNF831Q5JPB2 1677 aa13.36□□□□□ -0.27
YBX3-211ENST00000541351 LTBP3Q9NS15 1303 aa13.36□□□□□ -0.27
YBX3-211ENST00000541351 FLT4P35916 1363 aa13.35□□□□□ -0.27
YBX3-211ENST00000541351 MAP2K2P36507 400 aa13.35□□□□□ -0.27
YBX3-211ENST00000541351 GPR101Q96P66 508 aaPredicted RBP13.35□□□□□ -0.27
YBX3-211ENST00000541351 TAOK3Q9H2K8 898 aa13.35□□□□□ -0.27
YBX3-211ENST00000541351 DDNO94850 711 aaPredicted RBP13.34□□□□□ -0.27
YBX3-211ENST00000541351 HSP90AB1P08238 724 aaKnown RBP13.34□□□□□ -0.27
YBX3-211ENST00000541351 DGKZQ13574 1117 aa13.34□□□□□ -0.27
YBX3-211ENST00000541351 RRS1Q15050 365 aaKnown RBP13.34□□□□□ -0.27
YBX3-211ENST00000541351 C2CD5Q86YS7 1000 aa13.34□□□□□ -0.27
YBX3-211ENST00000541351 ERVV-2B6SEH9 535 aa13.33□□□□□ -0.28
YBX3-211ENST00000541351 TM4SF1P30408 202 aa13.33□□□□□ -0.28
YBX3-211ENST00000541351 CNTROBQ8N137 903 aa13.33□□□□□ -0.28
YBX3-211ENST00000541351 CAPNS2Q96L46 248 aa13.33□□□□□ -0.28
YBX3-211ENST00000541351 HACL1Q9UJ83 578 aa13.33□□□□□ -0.28
YBX3-211ENST00000541351 SCN4AP35499 1836 aa13.33□□□□□ -0.28
YBX3-211ENST00000541351 SLC24A1O60721 1099 aa13.32□□□□□ -0.28
YBX3-211ENST00000541351 SRP68Q9UHB9 627 aaKnown RBP13.32□□□□□ -0.28
YBX3-211ENST00000541351 PHKG2P15735 406 aa13.31□□□□□ -0.28
YBX3-211ENST00000541351 CRKLP46109 303 aaKnown RBP13.31□□□□□ -0.28
YBX3-211ENST00000541351 NBPF15Q8N660 670 aa13.31□□□□□ -0.28
YBX3-211ENST00000541351 ZNF219Q9P2Y4 722 aaPredicted RBP13.31□□□□□ -0.28
YBX3-211ENST00000541351 CCDC88AQ3V6T2 1871 aa13.31□□□□□ -0.28
YBX3-211ENST00000541351 EPHX2P34913 555 aa13.3□□□□□ -0.28
YBX3-211ENST00000541351 PDE6BP35913 854 aa13.3□□□□□ -0.28
YBX3-211ENST00000541351 HSP90AB2PQ58FF8 381 aa13.3□□□□□ -0.28
YBX3-211ENST00000541351 DICER1Q9UPY3 1922 aaKnown RBP13.3□□□□□ -0.28
YBX3-211ENST00000541351 C21orf2O43822 256 aa13.29□□□□□ -0.28
YBX3-211ENST00000541351 FBLN1P23142 703 aa13.29□□□□□ -0.28
YBX3-211ENST00000541351 GRM1Q13255 1194 aa13.29□□□□□ -0.28
YBX3-211ENST00000541351 ZNF622Q969S3 477 aaKnown RBP eCLIP13.29□□□□□ -0.28
YBX3-211ENST00000541351 DDX21Q9NR30 783 aaKnown RBP eCLIP13.29□□□□□ -0.28
YBX3-211ENST00000541351 TONSLQ96HA7 1378 aa13.29□□□□□ -0.28
YBX3-211ENST00000541351 THSD7BQ9C0I4 1608 aa13.28□□□□□ -0.28
YBX3-211ENST00000541351 COL5A3P25940 1745 aaPredicted RBP13.28□□□□□ -0.28
YBX3-211ENST00000541351 SERPINB2P05120 415 aa13.28□□□□□ -0.28
YBX3-211ENST00000541351 CNKSR1Q969H4 720 aa13.28□□□□□ -0.28
YBX3-211ENST00000541351 SLC4A9Q96Q91 983 aa13.28□□□□□ -0.28
YBX3-211ENST00000541351 DLEC1Q9Y238 1755 aa13.27□□□□□ -0.28
YBX3-211ENST00000541351 BRPF1P55201 1214 aaPredicted RBP13.27□□□□□ -0.29
YBX3-211ENST00000541351 CABP4P57796 275 aa13.27□□□□□ -0.29
YBX3-211ENST00000541351 USPL1Q5W0Q7 1092 aa13.27□□□□□ -0.29
YBX3-211ENST00000541351 NFIXQ14938 502 aa13.26□□□□□ -0.29
YBX3-211ENST00000541351 MAP1SQ66K74 1059 aaPredicted RBP13.26□□□□□ -0.29
YBX3-211ENST00000541351 CYP4F22Q6NT55 531 aa13.26□□□□□ -0.29
YBX3-211ENST00000541351 NCAPD2Q15021 1401 aa13.25□□□□□ -0.29
YBX3-211ENST00000541351 WASHC2AQ641Q2 1341 aa13.25□□□□□ -0.29
YBX3-211ENST00000541351 PTCD1O75127 700 aaKnown RBP13.25□□□□□ -0.29
YBX3-211ENST00000541351 NARFQ9UHQ1 456 aa13.25□□□□□ -0.29
YBX3-211ENST00000541351 TSKSQ9UJT2 592 aa13.25□□□□□ -0.29
YBX3-211ENST00000541351 TNRC18O15417 2968 aaPredicted RBP13.24□□□□□ -0.29
YBX3-211ENST00000541351 LMOD1P29536 600 aaPredicted RBP13.24□□□□□ -0.29
YBX3-211ENST00000541351 SOX10P56693 466 aa13.24□□□□□ -0.29
YBX3-211ENST00000541351 L3MBTL2Q969R5 705 aa13.24□□□□□ -0.29
YBX3-211ENST00000541351 BRIP1Q9BX63 1249 aa13.24□□□□□ -0.29
YBX3-211ENST00000541351 TLL2Q9Y6L7 1015 aa13.24□□□□□ -0.29
YBX3-211ENST00000541351 NPHP1O15259 732 aa13.23□□□□□ -0.29
YBX3-211ENST00000541351 HHIPL1Q96JK4 782 aa13.23□□□□□ -0.29
YBX3-211ENST00000541351 FYB1O15117 783 aa13.22□□□□□ -0.29
YBX3-211ENST00000541351 GGNBP2Q9H3C7 697 aa13.22□□□□□ -0.29
YBX3-211ENST00000541351 FER1L6Q2WGJ9 1857 aa13.22□□□□□ -0.29
YBX3-211ENST00000541351 NRXN2Q9P2S2 1712 aa13.22□□□□□ -0.29
YBX3-211ENST00000541351 MYH14Q7Z406 1995 aaKnown RBP13.21□□□□□ -0.29
YBX3-211ENST00000541351 CCDC93Q567U6 631 aa13.21□□□□□ -0.29
YBX3-211ENST00000541351 GPC2Q8N158 579 aa13.21□□□□□ -0.29
YBX3-211ENST00000541351 CARD11Q9BXL7 1154 aa13.21□□□□□ -0.29
YBX3-211ENST00000541351 SOS1Q07889 1333 aaPredicted RBP13.2□□□□□ -0.3
YBX3-211ENST00000541351 RNF123Q5XPI4 1314 aa13.2□□□□□ -0.3
YBX3-211ENST00000541351 PPM1GO15355 546 aaPredicted RBP13.2□□□□□ -0.3
YBX3-211ENST00000541351 NOGQ13253 232 aa13.2□□□□□ -0.3
YBX3-211ENST00000541351 PLEKHO1Q53GL0 409 aaPredicted RBP13.2□□□□□ -0.3
YBX3-211ENST00000541351 STYK1Q6J9G0 422 aa13.2□□□□□ -0.3
YBX3-211ENST00000541351 COL15A1P39059 1388 aa13.2□□□□□ -0.3
YBX3-211ENST00000541351 LTBP1Q14766 1721 aa13.19□□□□□ -0.3
YBX3-211ENST00000541351 AFDNP55196 1824 aaKnown RBP13.19□□□□□ -0.3
YBX3-211ENST00000541351 A0A087WZG4 1122 aa13.19□□□□□ -0.3
YBX3-211ENST00000541351 AOC2O75106 756 aa13.19□□□□□ -0.3
YBX3-211ENST00000541351 AMOTQ4VCS5 1084 aa13.19□□□□□ -0.3
YBX3-211ENST00000541351 C1orf141Q5JVX7 400 aa13.19□□□□□ -0.3
YBX3-211ENST00000541351 INTS5Q6P9B9 1019 aaKnown RBP13.19□□□□□ -0.3
YBX3-211ENST00000541351 BICDL1Q6ZP65 573 aa13.19□□□□□ -0.3
YBX3-211ENST00000541351 JDP2Q8WYK2 163 aa13.19□□□□□ -0.3
YBX3-211ENST00000541351 ADAMTSL1Q8N6G6 1762 aa13.19□□□□□ -0.3
YBX3-211ENST00000541351 CASP8AP2Q9UKL3 1982 aa13.18□□□□□ -0.3
YBX3-211ENST00000541351 ST5P78524 1137 aa13.18□□□□□ -0.3
YBX3-211ENST00000541351 FKBP4Q02790 459 aaKnown RBP eCLIP13.18□□□□□ -0.3
YBX3-211ENST00000541351 HABP4Q5JVS0 413 aaKnown RBP13.18□□□□□ -0.3
YBX3-211ENST00000541351 PRPF40BQ6NWY9 871 aaKnown RBP13.18□□□□□ -0.3
YBX3-211ENST00000541351 RTKN2Q8IZC4 609 aa13.18□□□□□ -0.3
YBX3-211ENST00000541351 MASTLQ96GX5 879 aa13.18□□□□□ -0.3
YBX3-211ENST00000541351 EYA1Q99502 592 aa13.18□□□□□ -0.3
YBX3-211ENST00000541351 SAGE1Q9NXZ1 904 aa13.18□□□□□ -0.3
YBX3-211ENST00000541351 ST20-MTHFSA0A0A6YYL1 179 aa13.17□□□□□ -0.3
YBX3-211ENST00000541351 MTHFSP49914 203 aa13.17□□□□□ -0.3
YBX3-211ENST00000541351 EIF6P56537 245 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms